Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 5.0e-111 404.4 203 100.0
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 9.3e-41 171.0 95 87.4
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 1.6e-40 170.2 95 88.4
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 2.1e-40 169.9 95 87.4
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 2.7e-40 169.5 95 86.3
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 4.6e-40 168.7 95 86.3
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 1.0e-39 167.5 95 85.3
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 1.0e-39 167.5 101 83.2
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 2.3e-39 166.4 95 85.3
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 3.0e-39 166.0 95 85.3
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 5.1e-39 165.2 95 86.3
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 5.1e-39 165.2 95 86.3
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 6.7e-39 164.9 95 84.2
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 8.7e-39 164.5 95 84.2
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 1.1e-38 164.1 95 85.3
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 1.1e-38 164.1 95 86.3
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 1.5e-38 163.7 96 83.3
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 2.5e-38 162.9 95 82.1
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 2.5e-38 162.9 95 83.2
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 2.5e-38 162.9 95 83.2
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 2.5e-38 162.9 95 83.2
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 2.5e-38 162.9 95 83.2
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 2.5e-38 162.9 95 83.2
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 3.3e-38 162.5 95 82.1
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 3.3e-38 162.5 95 83.2
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 3.3e-38 162.5 90 87.8
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 5.6e-38 161.8 95 83.2
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 7.4e-38 161.4 95 83.2
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 7.4e-38 161.4 92 83.7
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 7.4e-38 161.4 92 83.7
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 7.4e-38 161.4 92 83.7
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.6e-37 160.2 95 83.2
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.6e-37 160.2 95 83.2
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 1.6e-37 160.2 95 83.2
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 1.6e-37 160.2 94 84.0
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 2.1e-37 159.8 95 80.0
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 2.8e-37 159.5 95 84.2
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 3.7e-37 159.1 90 85.6
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 3.7e-37 159.1 95 82.1
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 4.8e-37 158.7 95 81.1
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.1e-36 157.5 90 84.4
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 1.1e-36 157.5 95 80.0
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 1.4e-36 157.1 95 81.1
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 1.4e-36 157.1 95 80.0
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 1.8e-36 156.8 95 80.0
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 2.4e-36 156.4 95 81.1
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 2.4e-36 156.4 90 83.3
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 2.4e-36 156.4 90 84.4
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 3.1e-36 156.0 95 81.1
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 3.1e-36 156.0 95 81.1
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 3.1e-36 156.0 94 81.9
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 3.1e-36 156.0 95 82.1
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 3.1e-36 156.0 95 81.1
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 4.0e-36 155.6 95 80.0
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 4.0e-36 155.6 95 76.8
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 4.0e-36 155.6 92 81.5
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 4.0e-36 155.6 95 81.1
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 5.3e-36 155.2 95 83.2
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 5.3e-36 155.2 90 84.4
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 9.0e-36 154.5 90 84.4
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 9.0e-36 154.5 90 83.3
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 9.0e-36 154.5 105 75.2
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 1.5e-35 153.7 90 82.2
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 1.5e-35 153.7 95 77.9
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 2.0e-35 153.3 99 79.8
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 3.4e-35 152.5 95 78.9
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 3.4e-35 152.5 90 81.1
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 3.4e-35 152.5 90 81.1
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 3.4e-35 152.5 90 81.1
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 4.5e-35 152.1 95 77.9
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 4.5e-35 152.1 90 81.1
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 4.5e-35 152.1 93 78.5
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 4.5e-35 152.1 90 83.3
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 4.5e-35 152.1 93 78.5
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 5.8e-35 151.8 100 73.0
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 7.6e-35 151.4 90 81.1
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 7.6e-35 151.4 90 81.1
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 7.6e-35 151.4 90 80.0
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 7.6e-35 151.4 102 75.5
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 1.0e-34 151.0 90 80.0
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 1.3e-34 150.6 100 72.0
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 1.3e-34 150.6 100 72.0
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 1.3e-34 150.6 100 72.0
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 1.3e-34 150.6 100 72.0
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 1.3e-34 150.6 100 72.0
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 1.3e-34 150.6 100 72.0
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 1.3e-34 150.6 100 72.0
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 1.3e-34 150.6 100 72.0
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.3e-34 150.6 92 80.4
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 1.7e-34 150.2 90 81.1
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 1.7e-34 150.2 90 81.1
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 2.2e-34 149.8 100 73.0
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 2.2e-34 149.8 90 82.2
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 2.2e-34 149.8 90 82.2
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 2.2e-34 149.8 90 82.2
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 2.9e-34 149.4 90 82.2
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 2.9e-34 149.4 121 66.1
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 2.9e-34 149.4 113 69.0
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 4.9e-34 148.7 90 81.1
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 6.5e-34 148.3 100 71.0
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 6.5e-34 148.3 95 80.0
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 6.5e-34 148.3 93 77.4
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 1.9e-33 146.7 90 81.1
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 2.5e-33 146.4 88 78.4
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 3.2e-33 146.0 90 82.2
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 7.1e-33 144.8 95 72.6
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 7.1e-33 144.8 95 72.6
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 1.2e-32 144.1 95 73.7
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 2.1e-32 143.3 95 71.6
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 2.1e-32 143.3 87 81.6
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 3.5e-32 142.5 90 77.8
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 6.0e-32 141.7 93 72.0
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 6.0e-32 141.7 90 76.7
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 6.0e-32 141.7 90 76.7
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 7.9e-32 141.4 90 74.4
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 1.0e-31 141.0 95 72.6
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 3.0e-31 139.4 95 70.5
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 3.0e-31 139.4 95 71.6
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 3.0e-31 139.4 90 74.4
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 3.9e-31 139.0 90 77.8
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 6.7e-31 138.3 81 84.0
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.5e-30 137.1 125 60.8
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 7.4e-30 134.8 97 71.1
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 7.4e-30 134.8 87 77.0
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 3.7e-29 132.5 81 84.0
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 4.8e-29 132.1 136 54.4
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.8e-28 130.2 95 65.3
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 3.1e-28 129.4 95 65.3
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 4.1e-28 129.0 95 65.3
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 5.3e-28 128.6 94 67.0
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 9.0e-28 127.9 92 67.4
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 9.0e-28 127.9 95 65.3
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 7.6e-27 124.8 76 80.3
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 1.0e-26 124.4 81 77.8
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 1.3e-26 124.0 94 64.9
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 2.9e-26 122.9 142 50.0
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 2.5e-25 119.8 90 67.8
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 4.6e-24 115.5 70 77.1
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 6.1e-24 115.2 93 63.4
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 1.8e-23 113.6 76 71.1
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 5.1e-23 112.1 62 83.9
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 1.1e-22 110.9 69 76.8
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 1.6e-21 107.1 58 86.2
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 8.2e-21 104.8 76 65.8
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 1.1e-20 104.4 61 83.6
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 9.0e-20 101.3 58 82.8
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 1.5e-19 100.5 87 52.9
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 3.4e-19 99.4 90 58.9
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 5.9e-19 98.6 58 81.0
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 2.2e-18 96.7 90 58.9
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 1.1e-17 94.4 63 68.3
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 3.6e-16 89.4 51 84.3
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 1.4e-12 77.4 81 49.4
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 2.0e-11 73.6 89 39.3
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 1.9e-09 67.0 103 39.8
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 7.2e-09 65.1 90 43.3
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 1.2e-08 64.3 92 34.8
SEGI_38506 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 3.6e-08 62.8 38 78.9


User provided reference genes

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