Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 0.0e+00 2448.3 1303 100.0
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 0.0e+00 1726.5 1188 76.7
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 2.5e-288 996.1 1204 50.3
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 2.2e-260 903.3 1199 47.5
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 2.1e-258 896.7 1157 46.1
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 3.6e-255 885.9 1161 46.3
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 6.9e-246 855.1 1237 44.7
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 6.4e-244 848.6 1176 45.4
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.5e-240 837.4 1153 45.3
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 1.5e-240 837.4 1146 44.7
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 5.3e-238 828.9 1153 45.3
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 3.3e-232 809.7 1165 44.5
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 4.5e-229 799.3 1154 45.0
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 4.5e-229 799.3 1162 44.6
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 3.3e-224 783.1 1222 42.7
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.8e-220 769.6 1155 42.4
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 5.5e-219 765.8 1150 43.3
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 1.0e-217 761.5 1152 43.3
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 3.0e-217 760.0 1170 42.6
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 3.3e-216 756.5 1124 42.4
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 2.2e-215 753.8 1151 42.7
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 2.8e-215 753.4 1147 42.4
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 4.8e-215 752.7 1169 42.1
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 2.4e-214 750.4 1146 42.4
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 7.7e-213 745.3 1153 42.0
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 1.4e-211 741.1 1189 40.8
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 8.5e-204 715.3 1166 40.4
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 2.6e-200 703.7 1186 40.1
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 1.1e-195 688.3 1152 40.1
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 1.8e-193 681.0 1147 39.3
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 1.3e-191 674.9 1161 40.6
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 5.9e-189 666.0 1158 40.2
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 2.3e-185 654.1 1106 40.3
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 3.5e-181 640.2 1164 37.7
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 5.5e-179 632.9 1163 37.6
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 9.5e-179 632.1 1167 37.5
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 9.8e-176 622.1 1168 38.4
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.0e-172 612.1 1181 37.1
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 5.6e-171 606.3 1127 37.7
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 1.2e-162 578.6 1164 36.8
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 2.4e-158 564.3 1158 34.9
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 9.2e-158 562.4 1156 36.2
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 5.0e-156 556.6 1163 34.7
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 6.6e-156 556.2 602 54.0
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 1.1e-155 555.4 1165 34.6
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 4.7e-154 550.1 920 39.9
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 1.8e-153 548.1 1152 35.1
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 2.3e-153 547.7 1156 34.9
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 2.3e-153 547.7 1133 35.3
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 4.0e-153 547.0 1157 36.0
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 4.1e-150 537.0 1152 35.9
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 5.4e-150 536.6 1154 35.6
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 2.1e-149 534.6 1153 35.8
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 4.6e-149 533.5 1156 34.9
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 4.6e-149 533.5 1146 35.0
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 2.5e-147 527.7 1143 34.9
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 4.3e-147 526.9 1161 35.6
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 1.5e-144 518.5 1152 35.6
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 1.4e-142 511.9 1155 34.6
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 1.6e-141 508.4 1143 33.9
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 3.5e-141 507.3 1145 33.7
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 4.6e-141 506.9 1121 33.5
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 1.5e-139 501.9 935 37.8
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 1.1e-137 495.7 1150 32.3
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 3.1e-137 494.2 725 43.9
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 7.8e-133 479.6 1159 34.9
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 5.6e-131 473.4 1158 34.7
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.3e-130 472.2 1157 34.8
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 4.9e-127 460.3 1149 32.4
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 1.0e-124 452.6 1147 32.1
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 1.9e-123 448.4 1157 32.8
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.2e-120 439.1 1151 32.3
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 5.1e-116 423.7 1141 31.9
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 8.2e-114 416.4 1160 31.4
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 3.5e-109 401.0 1156 30.8
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 4.6e-109 400.6 1156 31.5
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 1.0e-108 399.4 815 36.2
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 4.8e-106 390.6 792 36.5
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 8.5e-103 379.8 1152 30.8
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 6.7e-100 370.2 1109 31.4
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 1.3e-95 355.9 1177 28.6
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 6.7e-92 343.6 1131 29.2
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 7.4e-91 340.1 426 46.7
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 5.9e-88 330.5 775 32.6
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 1.7e-87 328.9 796 33.3
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.1e-86 326.2 789 34.6
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 2.5e-86 325.1 1133 29.4
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 3.6e-85 321.2 547 39.3
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 9.4e-78 296.6 792 31.8
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 9.4e-78 296.6 792 31.8
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 1.2e-77 296.2 792 31.8
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 5.2e-76 290.8 783 32.3
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 1.2e-75 289.7 778 32.3
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 1.4e-73 282.7 746 31.4
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 1.8e-73 282.3 812 31.2
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 6.1e-69 267.3 463 42.1
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 2.0e-67 262.3 259 55.2
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 9.1e-65 253.4 740 29.9
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 3.5e-64 251.5 823 31.2
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 1.3e-63 249.6 716 30.4
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.0e-60 240.0 593 34.2
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.4e-60 239.6 344 42.2
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 9.2e-57 226.9 565 34.3
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 5.9e-56 224.2 821 28.7
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 1.5e-51 209.5 365 37.3
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 8.3e-50 203.8 742 29.1
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 7.0e-49 200.7 837 28.1
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 2.5e-46 192.2 816 26.7
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.4e-44 186.4 304 38.2
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 3.4e-43 181.8 809 27.2
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 7.5e-43 180.6 769 27.4
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 7.5e-43 180.6 318 34.6
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.7e-42 178.3 531 31.8
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 8.3e-42 177.2 238 45.4
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 4.1e-41 174.9 1118 24.3
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 3.5e-40 171.8 806 25.1
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 6.2e-37 161.0 344 32.6
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.8e-36 159.5 1138 24.0
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 7.5e-35 154.1 155 53.5
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.3e-34 153.3 166 51.8
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.7e-34 152.9 811 25.2
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 1.2e-32 146.7 134 54.5
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 6.0e-32 144.4 557 27.6
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 1.0e-31 143.7 225 40.0
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 1.1e-30 140.2 243 39.5
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 1.9e-30 139.4 257 35.0
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 9.5e-30 137.1 742 25.6
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.2e-29 136.7 300 29.3
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 1.4e-28 133.3 152 49.3
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 4.0e-28 131.7 298 29.2
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 6.8e-28 131.0 300 29.0
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 8.9e-28 130.6 151 45.7
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 8.4e-26 124.0 107 57.0
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 1.3e-23 116.7 129 49.6
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 8.7e-23 114.0 202 37.1
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 4.0e-20 105.1 501 27.5
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 9.9e-19 100.5 169 42.0
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 6.4e-18 97.8 198 33.8
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 3.0e-15 89.0 63 61.9
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 5.6e-14 84.7 169 36.1
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 4.2e-09 68.6 57 54.4
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 5.4e-09 68.2 94 38.3
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 5.4e-09 68.2 236 28.4
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 3.5e-08 65.5 93 37.6


User provided reference genes

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