Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 3038.8 1504 100.0
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 2135.9 1505 70.5
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 2132.8 1516 69.9
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 2123.6 1513 69.7
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 2118.2 1504 70.1
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 2090.5 1513 68.8
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 2042.7 1520 68.0
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 2033.5 1539 66.9
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 2018.0 1535 65.5
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1969.9 1460 66.6
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1953.7 1501 65.6
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1926.4 1512 64.0
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1918.7 1508 63.4
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1898.6 1502 63.6
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1895.6 1520 62.9
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1882.5 1502 63.8
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1869.4 1545 63.1
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1852.0 1518 62.5
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1824.3 1512 61.2
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1812.7 1618 58.3
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1802.3 1518 61.3
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1795.4 1504 61.3
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1787.7 1509 60.6
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1786.9 1517 60.7
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1765.7 1515 60.7
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1764.2 1517 59.1
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1763.4 1499 60.8
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1747.6 1534 58.8
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1746.5 1508 59.2
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1746.1 1511 59.0
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1733.0 1509 58.8
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1725.3 1508 59.0
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1722.2 1505 58.8
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1712.6 1503 58.2
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1709.9 1510 58.2
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1706.4 1503 58.0
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1697.2 1506 58.8
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1696.8 1509 57.1
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1691.8 1508 57.3
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1690.2 1514 56.8
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1687.2 1506 57.6
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1686.8 1502 57.1
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1682.5 1524 57.0
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1682.5 1524 57.0
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1681.8 1515 58.6
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1677.5 1503 57.4
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1670.6 1508 57.6
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1666.4 1516 56.5
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1665.6 1512 56.9
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1660.6 1439 59.4
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1659.4 1501 56.7
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1651.7 1498 56.1
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1651.3 1500 58.3
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1647.5 1514 56.2
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1645.9 1503 56.6
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1644.0 1497 55.8
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1632.8 1508 54.4
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1625.9 1500 55.7
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1619.4 1522 54.3
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1610.9 1526 53.9
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1602.4 1202 67.2
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1588.9 1289 61.8
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1555.4 1457 54.6
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1515.0 1508 52.5
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1488.8 1747 46.4
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1485.7 1514 52.8
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1481.5 1236 61.0
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1477.2 1512 51.7
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1471.8 1513 52.4
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1468.4 1388 56.5
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1457.2 1512 51.9
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1440.6 1517 51.1
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1433.7 1517 51.1
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1431.4 1544 50.3
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1428.3 1515 51.0
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1427.9 1510 50.9
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1427.9 1520 50.9
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1417.9 1549 50.0
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1415.6 1507 50.8
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1413.7 1552 50.4
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 1407.9 1513 49.2
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1397.9 1515 51.4
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1394.8 1551 49.5
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1392.5 1052 67.3
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1390.9 1521 50.8
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1390.6 1538 49.3
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1365.5 1163 59.8
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1334.3 1135 59.8
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1327.0 1101 61.3
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1300.4 1293 53.6
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1242.6 1123 57.4
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 0.0e+00 1187.2 984 61.6
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 0.0e+00 1083.6 1129 51.2
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.6e-291 1005.7 1144 46.7
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 4.2e-279 965.7 1530 38.9
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 9.0e-266 921.4 1544 37.5
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 2.1e-262 910.2 1536 37.9
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 9.1e-242 841.6 969 46.6
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.0e-232 811.6 601 67.2
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 1.5e-228 797.7 600 66.7
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 1.7e-227 794.3 573 68.9
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 2.8e-227 793.5 1022 44.6
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 5.9e-217 759.2 1414 34.2
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 7.7e-217 758.8 639 61.7
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 2.8e-206 723.8 1022 41.9
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 1.8e-205 721.1 1018 42.0
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 3.0e-205 720.3 1019 41.9
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 3.5e-201 706.8 572 60.8
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.0e-192 677.2 615 57.6
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 6.9e-157 559.7 580 52.8
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.2e-154 550.8 575 51.0
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 1.8e-149 535.0 1031 36.2
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 4.0e-149 533.9 479 57.4
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 3.4e-132 477.6 564 46.1
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 2.7e-121 441.4 530 48.3
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 3.5e-116 424.5 246 87.8
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 1.1e-109 402.9 504 45.2
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-109 402.5 1007 28.5
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.0e-95 355.5 542 40.4
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 1.3e-94 352.8 455 44.2
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.1e-93 349.7 316 55.4
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 3.1e-93 348.2 378 49.5
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 3.5e-92 344.7 302 59.3
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.8e-85 322.4 333 48.3
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 7.8e-84 317.0 456 44.1
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 2.3e-83 315.5 309 52.8
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 5.0e-83 314.3 269 59.1
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 1.4e-80 306.2 813 29.8
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 1.5e-79 302.8 411 47.7
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.1e-77 294.7 370 44.9
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 9.2e-77 293.5 467 37.5
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 1.1e-74 286.6 212 63.7
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 3.6e-73 281.6 213 62.4
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 2.3e-72 278.9 388 43.3
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 5.8e-71 274.2 194 65.5
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 6.0e-68 264.2 295 49.2
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 5.8e-63 247.7 225 56.4
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.8e-57 228.8 314 40.8
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 1.2e-52 213.4 285 42.1
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 2.0e-47 196.1 392 36.0
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 8.4e-46 190.7 193 51.8
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.2e-44 186.8 131 65.6
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 5.1e-43 181.4 201 49.8
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 1.1e-42 180.3 117 65.0
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 2.5e-42 179.1 195 48.7
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 2.5e-42 179.1 191 52.9
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 4.3e-42 178.3 182 52.2
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 7.4e-42 177.6 124 66.1
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 7.1e-37 161.0 168 50.0
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 7.9e-36 157.5 116 67.2
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 1.4e-32 146.7 109 64.2
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 3.8e-30 138.7 147 48.3
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 1.9e-26 126.3 105 58.1
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 2.1e-20 106.3 98 59.2
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 7.9e-20 104.4 682 22.9
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 1.0e-19 104.0 98 58.2
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-17 95.9 242 30.2
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.3e-14 87.0 61 65.6
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 1.8e-11 76.6 176 33.5
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 4.4e-10 72.0 42 81.0
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 8.2e-09 67.8 90 43.3
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 8.2e-09 67.8 60 53.3
BcaC02g08127 Brassica carinata HOM05D001082 ORTHO05D005120 1.4e-08 67.0 96 41.7
BolC4t27334H Brassica oleracea HOM05D001082 ORTHO05D005120 2.0e-07 63.2 96 40.6
BolC8t47897H Brassica oleracea HOM05D001082 ORTHO05D005120 1.0e-06 60.8 38 73.7
SEGI_12379 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 5.0e-06 58.5 69 44.9
Cfa021815 Carpinus fangiana HOM05D001082 ORTHO05D125198 6.5e-06 58.2 222 25.2


User provided reference genes

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