Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2294 Trochodendron aralioides HOM05D004105 ORTHO05D005649 6.1e-79 297.4 144 100.0
MD06G1136900 Malus domestica HOM05D004105 ORTHO05D005649 7.0e-51 204.1 137 75.2
TAR371G1205 Trochodendron aralioides HOM05D004105 ORTHO05D005649 1.6e-50 203.0 137 75.9
Gorai.001G055800 Gossypium raimondii HOM05D004105 ORTHO05D005649 2.0e-50 202.6 137 74.5
Gohir.A07G048500 Gossypium hirsutum HOM05D004105 ORTHO05D005649 3.5e-50 201.8 137 73.7
Gohir.D07G052800 Gossypium hirsutum HOM05D004105 ORTHO05D005649 3.5e-50 201.8 137 73.7
MD14G1151700 Malus domestica HOM05D004105 ORTHO05D005649 4.6e-50 201.4 137 73.7
Duzib084G0440 Durio zibethinus HOM05D004105 ORTHO05D005649 6.0e-50 201.1 137 73.7
Thecc.03G135100 Theobroma cacao HOM05D004105 ORTHO05D005649 6.0e-50 201.1 137 73.0
CiPaw.11G003700 Carya illinoinensis HOM05D004105 ORTHO05D005649 7.8e-50 200.7 137 73.0
Manes.06G122800 Manihot esculenta HOM05D004105 ORTHO05D005649 7.8e-50 200.7 137 74.5
Dinv11203 Davidia involucrata HOM05D004105 ORTHO05D005649 1.0e-49 200.3 137 73.7
Nn4g22230 Nelumbo nucifera HOM05D004105 ORTHO05D005649 1.0e-49 200.3 137 74.5
DCAR_021646 Daucus carota HOM05D004105 ORTHO05D005649 1.7e-49 199.5 137 73.7
RcHm_v2.0_Chr7g0189421 Rosa chinensis HOM05D004105 ORTHO05D005649 1.7e-49 199.5 137 73.0
Manes.14G048100 Manihot esculenta HOM05D004105 ORTHO05D005649 2.3e-49 199.1 137 73.0
TWI23G0168 Tripterygium wilfordii HOM05D004105 ORTHO05D005649 3.0e-49 198.7 137 73.7
Cc10_g12640 Coffea canephora HOM05D004105 ORTHO05D005649 5.0e-49 198.0 137 71.5
Duzib205G0778 Durio zibethinus HOM05D004105 ORTHO05D005649 5.0e-49 198.0 137 73.0
Prupe.5G146800 Prunus persica HOM05D004105 ORTHO05D005649 5.0e-49 198.0 136 73.5
QL11p026924 Quercus lobata HOM05D004105 ORTHO05D005649 5.0e-49 198.0 137 73.0
Rhsim08G0193500 Rhododendron simsii HOM05D004105 ORTHO05D005649 5.0e-49 198.0 137 73.0
TPR.G38501 Trifolium pratense HOM05D004105 ORTHO05D005649 5.0e-49 198.0 137 70.8
FvH4_5g08950 Fragaria vesca HOM05D004105 ORTHO05D005649 8.6e-49 197.2 137 72.3
FAN04G0399 Fragaria x ananassa HOM05D004105 ORTHO05D005649 8.6e-49 197.2 137 72.3
FAN08G1339 Fragaria x ananassa HOM05D004105 ORTHO05D005649 8.6e-49 197.2 137 72.3
FAN18G1589 Fragaria x ananassa HOM05D004105 ORTHO05D005649 8.6e-49 197.2 137 72.3
PSO017G4116 Papaver somniferum HOM05D004105 ORTHO05D005649 8.6e-49 197.2 137 73.0
PSO478G2355 Papaver somniferum HOM05D004105 ORTHO05D005649 8.6e-49 197.2 137 73.0
Psat5g001920 Pisum sativum HOM05D004105 ORTHO05D005649 8.6e-49 197.2 137 70.1
FAN13G0496 Fragaria x ananassa HOM05D004105 ORTHO05D005649 1.1e-48 196.8 137 71.5
TWI39G0681 Tripterygium wilfordii HOM05D004105 ORTHO05D005649 1.1e-48 196.8 137 72.3
CSS0005977 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D005649 1.5e-48 196.4 137 73.0
CSS0020466 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D005649 1.5e-48 196.4 137 73.0
Ciclev10031414m.g Citrus clementina HOM05D004105 ORTHO05D005649 1.5e-48 196.4 136 72.8
Phvul.009G118500 Phaseolus vulgaris HOM05D004105 ORTHO05D005649 1.5e-48 196.4 137 70.1
Oeu036699.1 Olea europaea HOM05D004105 ORTHO05D005649 1.9e-48 196.1 137 70.1
Ca_15293_v3 Cicer arietinum L. HOM05D004105 ORTHO05D005649 2.5e-48 195.7 137 70.8
TAR622G0102 Trochodendron aralioides HOM05D004105 ORTHO05D005649 2.5e-48 195.7 135 74.8
Medtr3g118070 Medicago truncatula HOM05D004105 ORTHO05D005649 3.3e-48 195.3 137 70.1
VMungo1309G1206 Vigna mungo HOM05D004105 ORTHO05D005649 3.3e-48 195.3 137 70.8
arahy.Tifrunner.gnm1.ann1.NV4Y6S Arachis hypogaea HOM05D004105 ORTHO05D005649 4.3e-48 194.9 137 70.8
MSTRG.13687 Avicennia marina HOM05D004105 ORTHO05D005649 5.6e-48 194.5 137 71.5
Cpa.g.sc4.152 Carica papaya HOM05D004105 ORTHO05D005649 9.5e-48 193.7 137 70.8
HanXRQChr02g0034141 Helianthus annuus HOM05D004105 ORTHO05D005649 9.5e-48 193.7 137 72.3
unitig_32.g11186 Utricularia gibba HOM05D004105 ORTHO05D005649 9.5e-48 193.7 137 70.1
arahy.Tifrunner.gnm1.ann1.26LP8U Arachis hypogaea HOM05D004105 ORTHO05D005649 1.2e-47 193.4 137 70.1
CsaV3_7G007260 Cucumis sativus L. HOM05D004105 ORTHO05D005649 1.2e-47 193.4 137 70.1
Potri.015G101100 Populus trichocarpa HOM05D004105 ORTHO05D005649 1.2e-47 193.4 137 70.8
Duzib068G0759 Durio zibethinus HOM05D004105 ORTHO05D005649 1.6e-47 193.0 137 71.5
Hma1.2p1_0572F.1_g181070 Hydrangea macrophylla HOM05D004105 ORTHO05D005649 1.6e-47 193.0 137 72.3
CDE05G1664 Ceratophyllum demersum HOM05D004105 ORTHO05D005649 2.1e-47 192.6 137 70.1
ClCG09G016340 Citrullus lanatus HOM05D004105 ORTHO05D005649 2.1e-47 192.6 137 70.1
Dinv23185 Davidia involucrata HOM05D005705 ORTHO05D007152 2.1e-47 192.6 137 70.8
Glyma.06G002900 Glycine max HOM05D004105 ORTHO05D005649 2.1e-47 192.6 137 69.3
Aqoxy3G01668 Aquilegia oxysepala HOM05D004105 ORTHO05D005649 2.8e-47 192.2 137 72.3
Eucgr.K00727 Eucalyptus grandis HOM05D004105 ORTHO05D005649 2.8e-47 192.2 136 71.3
GSVIVG01008589001 Vitis vinifera HOM05D004105 ORTHO05D005649 2.8e-47 192.2 134 72.4
Atru.chr6.1872 Acer truncatum HOM05D004105 ORTHO05D005649 3.6e-47 191.8 137 71.5
Glyma.04G002900 Glycine max HOM05D004105 ORTHO05D005649 4.7e-47 191.4 136 69.1
Lsat_1_v5_gn_1_32701 Lactuca sativa HOM05D004105 ORTHO05D005649 4.7e-47 191.4 136 71.3
Sed0023678 Sechium edule HOM05D004105 ORTHO05D005649 4.7e-47 191.4 137 69.3
ECA247G3132 Erigeron canadensis HOM05D004105 ORTHO05D005649 6.2e-47 191.0 137 69.3
AUR62034822 Chenopodium quinoa HOM05D004105 ORTHO05D005649 8.0e-47 190.7 137 69.3
Lj9C482T3 Lonicera japonica HOM05D004105 ORTHO05D005649 8.0e-47 190.7 137 70.1
Actinidia18331 Actinidia chinensis HOM05D004105 ORTHO05D005649 1.1e-46 190.3 137 69.3
Haze_07185 Corylus avellana HOM05D004105 ORTHO05D005649 1.1e-46 190.3 137 70.8
Lalb_Chr08g0246741 Lupinus albus HOM05D004105 ORTHO05D005649 1.4e-46 189.9 135 69.6
Sabra15G0121600 Salix brachista HOM05D004105 ORTHO05D005649 1.4e-46 189.9 137 70.1
Actinidia08890 Actinidia chinensis HOM05D004105 ORTHO05D005649 1.8e-46 189.5 137 70.1
AUR62029560 Chenopodium quinoa HOM05D004105 ORTHO05D005649 1.8e-46 189.5 137 68.6
Rhsim12G0177900 Rhododendron simsii HOM05D004105 ORTHO05D005649 1.8e-46 189.5 137 70.1
BcaC04g23339 Brassica carinata HOM05D004105 ORTHO05D005649 2.3e-46 189.1 136 70.6
A09p08350 Brassica napus HOM05D004105 ORTHO05D005649 2.3e-46 189.1 136 70.6
C09p09420 Brassica napus HOM05D004105 ORTHO05D005649 2.3e-46 189.1 136 70.6
BolC9t53854H Brassica oleracea HOM05D004105 ORTHO05D005649 2.3e-46 189.1 136 70.6
BraA09t36484Z Brassica rapa HOM05D004105 ORTHO05D005649 2.3e-46 189.1 136 70.6
Lj1g0022155 Lotus japonicus HOM05D004105 ORTHO05D005649 2.3e-46 189.1 135 69.6
Peaxi162Scf00334g00121 Petunia axillaris HOM05D004105 ORTHO05D005649 2.3e-46 189.1 137 67.9
PGR083G1562 Punica granatum HOM05D004105 ORTHO05D005649 3.1e-46 188.7 137 70.1
ATR0582G244 Amborella trichopoda HOM05D004105 ORTHO05D005649 4.0e-46 188.3 137 68.6
THA.LOC104818177 Tarenaya hassleriana HOM05D004105 ORTHO05D005649 4.0e-46 188.3 136 69.9
AL8G40650 Arabidopsis lyrata HOM05D004105 ORTHO05D005649 5.2e-46 188.0 136 69.9
Thhalv10010337m.g Eutrema salsugineum HOM05D004105 ORTHO05D005649 5.2e-46 188.0 136 69.9
MBI04_g30438_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 5.2e-46 188.0 137 71.5
Sp5g13290 Schrenkiella parvula HOM05D004105 ORTHO05D005649 5.2e-46 188.0 136 69.9
EL10Ac5g11355 Beta vulgaris HOM05D004105 ORTHO05D005649 6.8e-46 187.6 137 67.9
Cfa018749 Carpinus fangiana HOM05D004105 ORTHO05D005649 6.8e-46 187.6 137 70.1
MELO3C018572.2 Cucumis melo HOM05D004105 ORTHO05D005649 6.8e-46 187.6 137 68.6
Thhalv10004138m.g Eutrema salsugineum HOM05D004105 ORTHO05D005649 6.8e-46 187.6 136 69.9
Gohir.A03G053920 Gossypium hirsutum HOM05D004105 ORTHO05D005649 6.8e-46 187.6 137 68.6
Gohir.D03G112900 Gossypium hirsutum HOM05D004105 ORTHO05D005649 6.8e-46 187.6 137 68.6
Gorai.003G119100 Gossypium raimondii HOM05D004105 ORTHO05D005649 6.8e-46 187.6 137 68.6
AL5G28210 Arabidopsis lyrata HOM05D004105 ORTHO05D005649 8.9e-46 187.2 136 69.9
AT3G48730 Arabidopsis thaliana HOM05D004105 ORTHO05D005649 8.9e-46 187.2 136 69.9
BcaB02g09750 Brassica carinata HOM05D004105 ORTHO05D005649 8.9e-46 187.2 136 69.9
BcaB04g19926 Brassica carinata HOM05D004105 ORTHO05D005649 8.9e-46 187.2 136 69.9
BcaC01g02611 Brassica carinata HOM05D004105 ORTHO05D005649 8.9e-46 187.2 136 69.9
A06p30190 Brassica napus HOM05D004105 ORTHO05D005649 8.9e-46 187.2 136 69.9
C03p62870 Brassica napus HOM05D004105 ORTHO05D005649 8.9e-46 187.2 136 69.9
BolC3t18541H Brassica oleracea HOM05D004105 ORTHO05D005649 8.9e-46 187.2 136 69.9
Carub.0005s1489 Capsella rubella HOM05D004105 ORTHO05D005649 8.9e-46 187.2 136 69.9
AT5G63570 Arabidopsis thaliana HOM05D004105 ORTHO05D005649 1.2e-45 186.8 136 69.1
Gohir.A03G054100 Gossypium hirsutum HOM05D004105 ORTHO05D005649 1.2e-45 186.8 137 68.6
Sp2g26660 Schrenkiella parvula HOM05D004105 ORTHO05D005649 1.2e-45 186.8 136 69.9
SEGI_17449 Sequoiadendron giganteum HOM05D004105 ORTHO05D005649 1.2e-45 186.8 136 68.4
CAN.G619.6 Capsicum annuum HOM05D004105 ORTHO05D005649 1.5e-45 186.4 136 69.1
BraA06t25970Z Brassica rapa HOM05D004105 ORTHO05D005649 2.0e-45 186.0 136 69.1
SMO337G0012 Selaginella moellendorffii HOM05D004105 ORTHO05D005649 2.0e-45 186.0 137 65.0
Aa31LG1G18370 Aethionema arabicum HOM05D004105 ORTHO05D005649 2.6e-45 185.7 136 69.9
Carub.0008s2430 Capsella rubella HOM05D004105 ORTHO05D005649 2.6e-45 185.7 136 69.9
vmacro16732 Vaccinium macrocarpon HOM05D004105 ORTHO05D005649 2.6e-45 185.7 137 68.6
CARHR277440 Cardamine hirsuta HOM05D004105 ORTHO05D005649 4.4e-45 184.9 136 69.1
Nitab4.5_0001089g0010 Nicotiana tabacum HOM05D004105 ORTHO05D005649 4.4e-45 184.9 136 69.1
Peaxi162Scf00681g00117 Petunia axillaris HOM05D004105 ORTHO05D005649 4.4e-45 184.9 137 67.2
HanXRQChr09g0273511 Helianthus annuus HOM05D004105 ORTHO05D005649 5.8e-45 184.5 137 67.9
SGA_v2.0_scaffold99G29471 Striga asiatica HOM05D004105 ORTHO05D005649 5.8e-45 184.5 136 66.2
MBI11_g13058_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 7.5e-45 184.1 137 70.8
Nitab4.5_0011777g0030 Nicotiana tabacum HOM05D004105 ORTHO05D005649 7.5e-45 184.1 136 69.1
PGSC0003DMG400032546 Solanum tuberosum HOM05D004105 ORTHO05D005649 7.5e-45 184.1 136 67.6
Zm00001eb291360 Zea mays HOM05D004105 ORTHO05D005649 7.5e-45 184.1 136 67.6
Os08g0532200 Oryza sativa ssp. japonica HOM05D004105 ORTHO05D005649 9.8e-45 183.7 137 66.4
Pp3c16_12390 Physcomitrium patens HOM05D004105 ORTHO05D005649 9.8e-45 183.7 137 66.4
Haze_07186 Corylus avellana HOM05D004105 ORTHO05D005649 1.3e-44 183.3 137 66.4
Migut.E00706 Erythranthe guttata HOM05D004105 ORTHO05D005649 2.9e-44 182.2 137 66.4
Sc04g0000430 Simmondsia chinensis HOM05D004105 ORTHO05D005649 2.9e-44 182.2 137 65.7
ECA232G0449 Erigeron canadensis HOM05D004105 ORTHO05D005649 4.9e-44 181.4 137 65.7
Hund02468 Selenicereus undatus HOM05D004105 ORTHO05D005649 4.9e-44 181.4 136 66.9
Solyc04g009200.3 Solanum lycopersicum HOM05D004105 ORTHO05D005649 1.9e-43 179.5 136 66.2
Sopen04g004330 Solanum pennellii HOM05D004105 ORTHO05D005649 1.9e-43 179.5 136 66.2
Pp3c27_4150 Physcomitrium patens HOM05D004105 ORTHO05D005649 3.2e-43 178.7 137 62.8
AagrBONN_evm.TU.Sc2ySwM_368.3191 Anthoceros agrestis HOM05D004105 ORTHO05D005649 4.1e-43 178.3 137 66.4
arahy.Tifrunner.gnm1.ann1.M8Q52W Arachis hypogaea HOM05D004105 ORTHO05D005649 5.4e-43 177.9 136 66.2
HPP92_000338 Vanilla planifolia HOM05D004105 ORTHO05D005649 2.3e-41 172.6 136 65.4
SHI10683 Sapria himalayana HOM05D004105 ORTHO05D005649 3.0e-41 172.2 137 64.2
CBR_g49915 Chara braunii HOM05D004105 ORTHO05D005649 5.0e-41 171.4 136 64.0
MBI04_g30114_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 1.6e-39 166.4 125 69.6
MCO04G178 Micromonas commoda HOM05D004105 ORTHO05D005649 3.1e-38 162.2 136 64.0
Mapoly0094s0038 Marchantia polymorpha HOM05D004105 ORTHO05D005649 5.2e-38 161.4 137 60.6
Gohir.D03G112950 Gossypium hirsutum HOM05D004105 ORTHO05D005649 2.7e-34 149.1 137 59.1
PRCOL_00001317 Prasinoderma coloniale HOM05D004105 ORTHO05D005649 1.7e-33 146.4 136 56.6
AUR62005532 Chenopodium quinoa HOM05D004105 ORTHO05D005649 3.0e-33 145.6 137 58.4
Cre03.g158000 Chlamydomonas reinhardtii HOM05D004105 ORTHO05D005649 3.3e-32 142.1 137 54.7
Actinidia36827 Actinidia chinensis HOM05D004105 ORTHO05D030951 5.6e-32 141.4 108 64.8
RcHm_v2.0_Chr7g0199591 Rosa chinensis HOM05D004105 ORTHO05D005649 1.2e-31 140.2 110 64.5
Potri.012G103000 Populus trichocarpa HOM05D004105 ORTHO05D005649 3.6e-31 138.7 137 56.9
CDE02G1094 Ceratophyllum demersum HOM05D004105 ORTHO05D030951 2.0e-21 106.3 95 58.9
AUR62029558 Chenopodium quinoa HOM05D004105 ORTHO05D005649 6.6e-17 91.3 61 75.4
HanXRQChr16g0498371 Helianthus annuus HOM05D004105 ORTHO05D005649 2.5e-16 89.4 63 71.4
CSS0046398 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D030951 3.3e-16 89.0 91 53.8
Nitab4.5_0002672g0010 Nicotiana tabacum HOM05D004105 ORTHO05D029789 2.8e-15 85.9 63 60.3
QL11p026963 Quercus lobata HOM05D004105 ORTHO05D005649 4.8e-15 85.1 65 66.2
Sabra12G0075400 Salix brachista HOM05D004105 ORTHO05D005649 2.6e-13 79.3 136 39.0
QL11p027046 Quercus lobata HOM05D004105 ORTHO05D337488 4.8e-07 58.5 56 50.0
arahy.Tifrunner.gnm1.ann1.IMIB52 Arachis hypogaea HOM05D004105 ORTHO05D005649 4.0e-06 55.5 32 78.1


User provided reference genes

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