Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1375 Trochodendron aralioides HOM05D007241 ORTHO05D009142 2.7e-35 151.4 72 100.0
TAR633G0637 Trochodendron aralioides HOM05D007241 ORTHO05D009142 3.1e-23 111.3 66 84.8
GSVIVG01034032001 Vitis vinifera HOM05D007241 ORTHO05D009142 3.9e-18 94.4 64 75.0
CiPaw.10G153200 Carya illinoinensis HOM05D007241 ORTHO05D009142 2.5e-17 91.7 63 76.2
Nn2g11326 Nelumbo nucifera HOM05D007241 ORTHO05D009142 2.5e-17 91.7 64 73.4
PSO063G4791 Papaver somniferum HOM05D007241 ORTHO05D009142 4.3e-17 90.9 63 68.3
Haze_20925 Corylus avellana HOM05D007241 ORTHO05D009142 2.8e-16 88.2 64 68.8
Hma1.2p1_0671F.1_g200780 Hydrangea macrophylla HOM05D007241 ORTHO05D009142 6.3e-16 87.0 61 72.1
Sabra06G0072600 Salix brachista HOM05D007241 ORTHO05D009142 6.3e-16 87.0 64 68.8
Sc22g0004510 Simmondsia chinensis HOM05D007241 ORTHO05D009142 4.1e-15 84.3 63 63.5
Atru.chr8.2123 Acer truncatum HOM05D007241 ORTHO05D009142 9.0e-15 83.2 58 67.2
Aqoxy1G00764 Aquilegia oxysepala HOM05D007241 ORTHO05D009142 1.5e-14 82.4 63 63.5
FvH4_6g12350 Fragaria vesca HOM05D007241 ORTHO05D009142 2.6e-14 81.6 66 65.2
FAN05G2185 Fragaria x ananassa HOM05D007241 ORTHO05D009142 2.6e-14 81.6 66 65.2
Prupe.6G268100 Prunus persica HOM05D007241 ORTHO05D009142 3.4e-14 81.3 66 65.2
Duzib106G0374 Durio zibethinus HOM05D007241 ORTHO05D009142 4.5e-14 80.9 59 69.5
FAN02G0490 Fragaria x ananassa HOM05D007241 ORTHO05D009142 1.0e-13 79.7 66 63.6
FAN14G0673 Fragaria x ananassa HOM05D007241 ORTHO05D009142 1.0e-13 79.7 66 63.6
MBI14_g28606_MAGBIO Magnolia biondii HOM05D007241 ORTHO05D009142 1.0e-13 79.7 64 60.9
Manes.08G083700 Manihot esculenta HOM05D007241 ORTHO05D009142 1.0e-13 79.7 64 59.4
Ciclev10012141m.g Citrus clementina HOM05D007241 ORTHO05D009142 1.3e-13 79.3 58 65.5
COL.COLO4_14645 Corchorus olitorius HOM05D007241 ORTHO05D009142 1.7e-13 79.0 54 72.2
Duzib093G2007 Durio zibethinus HOM05D007241 ORTHO05D009142 1.7e-13 79.0 59 67.8
Cpa.g.sc56.88 Carica papaya HOM05D007241 ORTHO05D009142 2.9e-13 78.2 60 66.7
vmacro20223 Vaccinium macrocarpon HOM05D007241 ORTHO05D009142 2.9e-13 78.2 60 65.0
Eucgr.K03006 Eucalyptus grandis HOM05D007241 ORTHO05D009142 3.8e-13 77.8 62 62.9
Potri.006G094800 Populus trichocarpa HOM05D007241 ORTHO05D009142 3.8e-13 77.8 63 63.5
Gohir.A04G087000 Gossypium hirsutum HOM05D007241 ORTHO05D009142 6.5e-13 77.0 54 68.5
Gohir.D04G127300 Gossypium hirsutum HOM05D007241 ORTHO05D009142 6.5e-13 77.0 54 68.5
Gorai.012G110300 Gossypium raimondii HOM05D007241 ORTHO05D009142 6.5e-13 77.0 54 68.5
DCAR_010398 Daucus carota HOM05D007241 ORTHO05D009142 8.5e-13 76.6 62 58.1
Lsat_1_v5_gn_2_72881 Lactuca sativa HOM05D007241 ORTHO05D009142 1.1e-12 76.3 54 61.1
Peaxi162Scf00427g00616 Petunia axillaris HOM05D007241 ORTHO05D009142 1.1e-12 76.3 58 63.8
Thecc.05G024800 Theobroma cacao HOM05D007241 ORTHO05D009142 1.1e-12 76.3 54 70.4
RcHm_v2.0_Chr3g0464151 Rosa chinensis HOM05D007241 ORTHO05D009142 1.4e-12 75.9 65 58.5
CSS0004399 Camellia sinensis var. sinensis HOM05D007241 ORTHO05D009142 1.9e-12 75.5 52 69.2
ATR0618G224 Amborella trichopoda HOM05D007241 ORTHO05D009142 2.5e-12 75.1 56 62.5
CDE04G1578 Ceratophyllum demersum HOM05D007241 ORTHO05D009142 3.2e-12 74.7 50 64.0
ClCG04G007350 Citrullus lanatus HOM05D007241 ORTHO05D009142 3.2e-12 74.7 52 67.3
MELO3C003216.2 Cucumis melo HOM05D007241 ORTHO05D009142 3.2e-12 74.7 52 67.3
CsaV3_4G025900 Cucumis sativus L. HOM05D007241 ORTHO05D009142 3.2e-12 74.7 52 67.3
THA.LOC104823276 Tarenaya hassleriana HOM05D007241 ORTHO05D009142 3.2e-12 74.7 55 63.6
Hund04733 Selenicereus undatus HOM05D007241 ORTHO05D009142 4.2e-12 74.3 61 59.0
Ah.07g207300 Amaranthus hybridus HOM05D007241 ORTHO05D009142 5.5e-12 73.9 63 58.7
EL10Ac3g05675 Beta vulgaris HOM05D007241 ORTHO05D009142 5.5e-12 73.9 60 58.3
CAN.G1233.2 Capsicum annuum HOM05D007241 ORTHO05D009142 5.5e-12 73.9 58 62.1
Solyc09g011830.4 Solanum lycopersicum HOM05D007241 ORTHO05D009142 5.5e-12 73.9 58 62.1
PGSC0003DMG400020362 Solanum tuberosum HOM05D007241 ORTHO05D009142 5.5e-12 73.9 58 62.1
Nitab4.5_0007671g0010 Nicotiana tabacum HOM05D007241 ORTHO05D009142 7.2e-12 73.6 58 60.3
Sopen09g006650 Solanum pennellii HOM05D007241 ORTHO05D009142 7.2e-12 73.6 58 60.3
AUR62021204 Chenopodium quinoa HOM05D007241 ORTHO05D009142 9.4e-12 73.2 59 59.3
Thhalv10021091m.g Eutrema salsugineum HOM05D007241 ORTHO05D009142 9.4e-12 73.2 52 63.5
Sed0022131 Sechium edule HOM05D007241 ORTHO05D009142 9.4e-12 73.2 52 67.3
CANSAT35G2041 Cannabis sativa HOM05D007241 ORTHO05D009142 1.2e-11 72.8 60 61.7
Carub.0003s0832 Capsella rubella HOM05D007241 ORTHO05D009142 1.2e-11 72.8 63 52.4
AT3G09210 Arabidopsis thaliana HOM05D007241 ORTHO05D009142 1.6e-11 72.4 63 54.0
BcaC09g48056 Brassica carinata HOM05D007241 ORTHO05D009142 1.6e-11 72.4 63 54.0
HPP92_014289 Vanilla planifolia HOM05D007241 ORTHO05D009142 1.6e-11 72.4 52 65.4
AUR62015997 Chenopodium quinoa HOM05D007241 ORTHO05D009142 2.1e-11 72.0 59 57.6
ECA233G2042 Erigeron canadensis HOM05D007241 ORTHO05D009142 2.1e-11 72.0 54 55.6
Glyma.01G109100 Glycine max HOM05D007241 ORTHO05D009142 2.1e-11 72.0 64 56.2
BcaC09g48011 Brassica carinata HOM05D007241 ORTHO05D009142 2.7e-11 71.6 66 51.5
AL3G20320 Arabidopsis lyrata HOM05D007241 ORTHO05D009142 3.6e-11 71.2 51 62.7
Sp3g07590 Schrenkiella parvula HOM05D007241 ORTHO05D009142 3.6e-11 71.2 51 62.7
BraA01t04312Z Brassica rapa HOM05D007241 ORTHO05D009142 6.1e-11 70.5 63 52.4
Nitab4.5_0000008g0420 Nicotiana tabacum HOM05D007241 ORTHO05D009142 6.1e-11 70.5 58 58.6
Aa31LG3G1690 Aethionema arabicum HOM05D007241 ORTHO05D009142 7.9e-11 70.1 51 64.7
BolC1t05471H Brassica oleracea HOM05D007241 ORTHO05D009142 7.9e-11 70.1 63 52.4
CARHR083550 Cardamine hirsuta HOM05D007241 ORTHO05D009142 1.0e-10 69.7 63 50.8
TWI74G0988 Tripterygium wilfordii HOM05D007241 ORTHO05D009142 1.0e-10 69.7 53 66.0
HanXRQChr10g0300011 Helianthus annuus HOM05D007241 ORTHO05D009142 1.4e-10 69.3 56 55.4
VMungo0331G1333 Vigna mungo HOM05D007241 ORTHO05D009142 1.4e-10 69.3 64 54.7
SalBow3G1957 Salvia bowleyana HOM05D007241 ORTHO05D009142 1.8e-10 68.9 52 63.5
Migut.J00242 Erythranthe guttata HOM05D007241 ORTHO05D009142 3.0e-10 68.2 51 62.7
Medtr4g019060 Medicago truncatula HOM05D007241 ORTHO05D009142 3.0e-10 68.2 64 53.1
TAR636G1005 Trochodendron aralioides HOM05D008244 ORTHO05D009402 3.0e-10 68.2 46 69.6
Ca_20114_v3 Cicer arietinum L. HOM05D007241 ORTHO05D009142 1.1e-09 66.2 62 48.4
Cc06_g01830 Coffea canephora HOM05D007241 ORTHO05D009142 1.1e-09 66.2 56 58.9
Lj3g0002129 Lotus japonicus HOM05D007241 ORTHO05D009142 1.1e-09 66.2 64 50.0
PGR004G2498 Punica granatum HOM05D007241 ORTHO05D009142 1.5e-09 65.9 51 62.7
Lalb_Chr13g0291331 Lupinus albus HOM05D007241 ORTHO05D009142 2.0e-09 65.5 71 47.9
Phvul.010G006200 Phaseolus vulgaris HOM05D007241 ORTHO05D009142 2.0e-09 65.5 64 51.6
MSTRG.5609 Avicennia marina HOM05D007241 ORTHO05D009142 5.7e-09 63.9 52 57.7
Oeu015010.1 Olea europaea HOM05D007241 ORTHO05D009142 7.4e-09 63.5 54 53.7
Psat7g241800 Pisum sativum HOM05D007241 ORTHO05D009142 1.3e-08 62.8 64 50.0
arahy.Tifrunner.gnm1.ann1.4L01Q9 Arachis hypogaea HOM05D007241 ORTHO05D009142 1.7e-08 62.4 70 47.1
arahy.Tifrunner.gnm1.ann1.IV4I8P Arachis hypogaea HOM05D007241 ORTHO05D009142 2.2e-08 62.0 70 47.1
Os03g0825500 Oryza sativa ssp. japonica HOM05D007241 ORTHO05D009142 2.2e-08 62.0 50 60.0
Zm00001eb063100 Zea mays HOM05D007241 ORTHO05D009142 8.2e-08 60.1 48 58.3
TAR636G2806 Trochodendron aralioides HOM05D000088 ORTHO05D029931 1.1e-07 59.7 36 80.6
SGA_v2.0_scaffold85G26792 Striga asiatica HOM05D007241 ORTHO05D009142 1.4e-07 59.3 51 52.9
TPR.G8187 Trifolium pratense HOM05D007241 ORTHO05D009142 1.4e-07 59.3 52 51.9
arahy.Tifrunner.gnm1.ann1.D4R6TJ Arachis hypogaea HOM05D007241 ORTHO05D009142 6.9e-07 57.0 66 45.5
unitig_749.g14176 Utricularia gibba HOM05D007241 ORTHO05D009142 9.1e-07 56.6 48 50.0
Lj3A958T74 Lonicera japonica HOM05D007241 ORTHO05D009142 5.9e-06 53.9 38 65.8


User provided reference genes

Program Settings