Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1272 Trochodendron aralioides HOM05D003523 ORTHO05D004493 0.0e+00 2235.3 1100 100.0
TAR627G0569 Trochodendron aralioides HOM05D003523 ORTHO05D004493 0.0e+00 2075.8 1107 93.0
CiPaw.09G057400 Carya illinoinensis HOM05D003523 ORTHO05D004493 0.0e+00 1891.3 1108 84.1
Dinv07537 Davidia involucrata HOM05D003523 ORTHO05D004493 0.0e+00 1876.3 1107 84.2
MBI17_g03749_MAGBIO Magnolia biondii HOM05D003523 ORTHO05D004493 0.0e+00 1869.7 1112 83.3
Prupe.4G043900 Prunus persica HOM05D003523 ORTHO05D004493 0.0e+00 1857.4 1105 82.9
RcHm_v2.0_Chr5g0008021 Rosa chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1857.0 1107 82.7
Manes.17G043400 Manihot esculenta HOM05D003523 ORTHO05D004493 0.0e+00 1852.0 1107 82.7
Actinidia05616 Actinidia chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1851.3 1107 83.3
MD10G1296700 Malus domestica HOM05D003523 ORTHO05D004493 0.0e+00 1846.6 1107 82.7
COL.COLO4_31502 Corchorus olitorius HOM05D003523 ORTHO05D004493 0.0e+00 1843.2 1106 81.6
Ciclev10014062m.g Citrus clementina HOM05D003523 ORTHO05D004493 0.0e+00 1839.3 1106 82.2
MD05G1316200 Malus domestica HOM05D003523 ORTHO05D004493 0.0e+00 1832.0 1107 82.3
Potri.004G040300 Populus trichocarpa HOM05D003523 ORTHO05D004493 0.0e+00 1830.5 1109 82.5
Thecc.06G190800 Theobroma cacao HOM05D003523 ORTHO05D004493 0.0e+00 1829.7 1106 81.5
CANSAT35G0505 Cannabis sativa HOM05D003523 ORTHO05D004493 0.0e+00 1824.3 1110 82.0
CSS0028341 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 0.0e+00 1823.9 1107 81.7
Cfa000415 Carpinus fangiana HOM05D003523 ORTHO05D004493 0.0e+00 1822.8 1107 81.8
FvH4_3g04860 Fragaria vesca HOM05D003523 ORTHO05D004493 0.0e+00 1820.4 1107 81.6
Potri.004G040400 Populus trichocarpa HOM05D003523 ORTHO05D004493 0.0e+00 1816.6 1108 81.9
Atru.chr10.1936 Acer truncatum HOM05D003523 ORTHO05D004493 0.0e+00 1815.0 1107 81.5
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 0.0e+00 1814.7 1106 81.3
FAN25G2846 Fragaria x ananassa HOM05D003523 ORTHO05D004493 0.0e+00 1809.7 1106 81.1
Potri.011G049700 Populus trichocarpa HOM05D003523 ORTHO05D004493 0.0e+00 1798.1 1109 81.2
Eucgr.D00642 Eucalyptus grandis HOM05D003523 ORTHO05D004493 0.0e+00 1796.2 1106 80.2
Gorai.011G026100 Gossypium raimondii HOM05D003523 ORTHO05D004493 0.0e+00 1795.8 1107 80.4
MELO3C002588.2 Cucumis melo HOM05D003523 ORTHO05D004493 0.0e+00 1795.0 1107 79.8
CsaV3_1G012140 Cucumis sativus L. HOM05D003523 ORTHO05D004493 0.0e+00 1793.5 1107 79.9
PSO541G1427 Papaver somniferum HOM05D003523 ORTHO05D004493 0.0e+00 1788.1 1117 80.9
TWI38G0549 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 0.0e+00 1787.7 1107 79.6
DCAR_028097 Daucus carota HOM05D003523 ORTHO05D004493 0.0e+00 1785.0 1113 79.2
PSO675G2502 Papaver somniferum HOM05D003523 ORTHO05D004493 0.0e+00 1782.7 1117 80.6
Gohir.D10G024800 Gossypium hirsutum HOM05D003523 ORTHO05D004493 0.0e+00 1781.5 1107 79.8
Gohir.A10G024100 Gossypium hirsutum HOM05D003523 ORTHO05D004493 0.0e+00 1773.8 1107 79.5
Lj2A286G46 Lonicera japonica HOM05D003523 ORTHO05D004493 0.0e+00 1772.3 1107 80.1
Sed0007449 Sechium edule HOM05D003523 ORTHO05D004493 0.0e+00 1769.6 1108 78.6
PGR004G0168 Punica granatum HOM05D003523 ORTHO05D004493 0.0e+00 1764.6 1114 78.8
Sabra11G0034200 Salix brachista HOM05D003523 ORTHO05D004493 0.0e+00 1763.4 1122 79.1
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 0.0e+00 1761.9 1099 80.3
Peaxi162Scf00379g00211 Petunia axillaris HOM05D003523 ORTHO05D004493 0.0e+00 1760.0 1104 79.4
Actinidia01893 Actinidia chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1759.6 1058 83.5
Aqoxy4G01061 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 0.0e+00 1756.1 1109 79.8
Sopen02g023370 Solanum pennellii HOM05D003523 ORTHO05D004493 0.0e+00 1751.9 1107 79.3
Solyc02g078520.4 Solanum lycopersicum HOM05D003523 ORTHO05D004493 0.0e+00 1750.7 1107 79.4
PGSC0003DMG400022382 Solanum tuberosum HOM05D003523 ORTHO05D004493 0.0e+00 1750.3 1107 79.2
Phvul.002G227600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 0.0e+00 1741.9 1109 78.6
Glyma.13G241100 Glycine max HOM05D003523 ORTHO05D004493 0.0e+00 1741.1 1110 77.7
Sabra04G0024900 Salix brachista HOM05D003523 ORTHO05D004493 0.0e+00 1734.2 1183 75.3
RhsimUnG0044700 Rhododendron simsii HOM05D003523 ORTHO05D004493 0.0e+00 1733.8 1232 72.7
arahy.Tifrunner.gnm1.ann1.WE2A0Y Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1733.4 1109 77.3
Glyma.13G181200 Glycine max HOM05D003523 ORTHO05D004493 0.0e+00 1733.0 1109 78.0
Cc02_g13070 Coffea canephora HOM05D003523 ORTHO05D004493 0.0e+00 1732.2 1107 77.7
VMungo0251G3152 Vigna mungo HOM05D003523 ORTHO05D004493 0.0e+00 1731.5 1109 77.9
arahy.Tifrunner.gnm1.ann1.HK023S Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1729.1 1109 77.1
Lj6g0009911 Lotus japonicus HOM05D003523 ORTHO05D004493 0.0e+00 1726.1 1110 77.5
EL10Ac8g20345 Beta vulgaris HOM05D003523 ORTHO05D004493 0.0e+00 1723.0 1116 76.9
Phvul.006G187600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 0.0e+00 1720.7 1110 77.4
Lj4g0014475 Lotus japonicus HOM05D003523 ORTHO05D004493 0.0e+00 1718.4 1107 77.8
Psat7g112840 Pisum sativum HOM05D003523 ORTHO05D004493 0.0e+00 1717.2 1107 77.5
Migut.M01189 Erythranthe guttata HOM05D003523 ORTHO05D004493 0.0e+00 1713.7 1109 77.3
AUR62014791 Chenopodium quinoa HOM05D003523 ORTHO05D004493 0.0e+00 1713.4 1106 77.0
arahy.Tifrunner.gnm1.ann1.FP1IKL Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1711.4 1111 76.7
THA.LOC104812899 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 0.0e+00 1708.3 1110 75.9
HanXRQChr16g0518201 Helianthus annuus HOM05D003523 ORTHO05D004493 0.0e+00 1708.0 1110 76.6
Lalb_Chr09g0327601 Lupinus albus HOM05D003523 ORTHO05D004493 0.0e+00 1703.7 1124 76.0
VMungo0540G1836 Vigna mungo HOM05D003523 ORTHO05D004493 0.0e+00 1700.3 1105 76.8
SalBow8G0447 Salvia bowleyana HOM05D003523 ORTHO05D004493 0.0e+00 1699.1 1107 77.2
Duzib192G0623 Durio zibethinus HOM05D003523 ORTHO05D004493 0.0e+00 1695.2 1121 76.5
HanXRQChr16g0511231 Helianthus annuus HOM05D003523 ORTHO05D004493 0.0e+00 1694.5 1112 76.3
Medtr4g088965 Medicago truncatula HOM05D003523 ORTHO05D004493 0.0e+00 1692.6 1107 76.2
MSTRG.7305 Avicennia marina HOM05D003523 ORTHO05D004493 0.0e+00 1689.9 1105 76.2
TWI63G0185 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 0.0e+00 1686.4 1061 78.4
THA.LOC104806291 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 0.0e+00 1685.2 1107 75.2
Sc05g0007810 Simmondsia chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1677.1 1067 78.6
Lsat_1_v5_gn_4_52460 Lactuca sativa HOM05D003523 ORTHO05D004493 0.0e+00 1673.3 1129 75.3
Carub.0006s3284 Capsella rubella HOM05D003523 ORTHO05D004493 0.0e+00 1665.6 1109 75.0
SGA_v2.0_scaffold7G03976 Striga asiatica HOM05D003523 ORTHO05D004493 0.0e+00 1665.2 1121 75.2
ECA234G2309 Erigeron canadensis HOM05D003523 ORTHO05D004493 0.0e+00 1664.4 1107 75.2
Lalb_Chr20g0121981 Lupinus albus HOM05D003523 ORTHO05D004493 0.0e+00 1662.5 1111 74.1
ClCG03G005910 Citrullus lanatus HOM05D003523 ORTHO05D004493 0.0e+00 1662.1 1101 75.9
Aqoxy1G02553 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 0.0e+00 1660.6 1110 76.1
Oeu038218.1 Olea europaea HOM05D003523 ORTHO05D004493 0.0e+00 1658.3 1136 74.3
ATR0680G247 Amborella trichopoda HOM05D003523 ORTHO05D004493 0.0e+00 1651.3 1116 75.0
Haze_06501 Corylus avellana HOM05D003523 ORTHO05D004493 0.0e+00 1649.8 1154 73.7
CARHR252610 Cardamine hirsuta HOM05D003523 ORTHO05D004493 0.0e+00 1647.5 1108 74.5
Hma1.2p1_0126F.1_g059210 Hydrangea macrophylla HOM05D003523 ORTHO05D004493 0.0e+00 1647.5 1107 75.9
AL6G48430 Arabidopsis lyrata HOM05D003523 ORTHO05D004493 0.0e+00 1644.8 1107 74.1
AT4G04920 Arabidopsis thaliana HOM05D003523 ORTHO05D004493 0.0e+00 1639.8 1113 73.8
Sp6g04040 Schrenkiella parvula HOM05D003523 ORTHO05D004493 0.0e+00 1636.7 1129 73.4
SpUn0051_0020 Schrenkiella parvula HOM05D003523 ORTHO05D004493 0.0e+00 1636.7 1129 73.4
Nitab4.5_0006478g0020 Nicotiana tabacum HOM05D003523 ORTHO05D004493 0.0e+00 1632.8 1107 74.9
Aa31LG9G9570 Aethionema arabicum HOM05D003523 ORTHO05D004493 0.0e+00 1632.1 1110 74.3
Thhalv10028367m.g Eutrema salsugineum HOM05D003523 ORTHO05D004493 0.0e+00 1631.3 1116 73.8
BolC9t56130H Brassica oleracea HOM05D003523 ORTHO05D004493 0.0e+00 1627.5 1124 73.2
BcaC04g21345 Brassica carinata HOM05D003523 ORTHO05D004493 0.0e+00 1626.7 1123 73.4
C09p32950 Brassica napus HOM05D003523 ORTHO05D004493 0.0e+00 1626.7 1123 73.4
A09p25980 Brassica napus HOM05D003523 ORTHO05D004493 0.0e+00 1625.1 1123 73.2
Os10g0498700 Oryza sativa ssp. japonica HOM05D003523 ORTHO05D004493 0.0e+00 1623.2 1115 73.5
BcaB05g23702 Brassica carinata HOM05D003523 ORTHO05D004493 0.0e+00 1619.8 1122 73.5
BraA09t38165Z Brassica rapa HOM05D003523 ORTHO05D004493 0.0e+00 1606.3 1142 71.5
BcaB01g01847 Brassica carinata HOM05D003523 ORTHO05D004493 0.0e+00 1605.9 1121 72.6
AUR62016978 Chenopodium quinoa HOM05D003523 ORTHO05D004493 0.0e+00 1605.9 1157 70.7
Lj1A1207T84 Lonicera japonica HOM05D003523 ORTHO05D004493 0.0e+00 1600.5 1118 73.3
Ca_00312_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 0.0e+00 1584.7 1061 75.7
Ca_18531_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 0.0e+00 1557.7 1107 72.0
CDE08G1359 Ceratophyllum demersum HOM05D003523 ORTHO05D004493 0.0e+00 1507.7 1082 71.0
unitig_748.g8004 Utricularia gibba HOM05D003523 ORTHO05D004493 0.0e+00 1469.1 1109 67.4
Ah.14g089320 Amaranthus hybridus HOM05D003523 ORTHO05D004493 0.0e+00 1453.3 1137 67.1
HPP92_028517 Vanilla planifolia HOM05D003523 ORTHO05D004493 0.0e+00 1449.1 1104 67.7
arahy.Tifrunner.gnm1.ann1.H4J46B Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1441.8 959 75.7
CSS0036865 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 0.0e+00 1424.5 899 80.8
TPR.G36850 Trifolium pratense HOM05D003523 ORTHO05D004493 0.0e+00 1384.0 1122 64.2
Zm00001eb044560 Zea mays HOM05D003523 ORTHO05D004493 0.0e+00 1369.4 961 73.5
Nn1g04016 Nelumbo nucifera HOM05D003523 ORTHO05D004493 0.0e+00 1366.3 1109 66.3
HPP92_028530 Vanilla planifolia HOM05D003523 ORTHO05D004493 0.0e+00 1334.3 1042 67.9
Medtr2g013160 Medicago truncatula HOM05D003523 ORTHO05D004493 0.0e+00 1266.9 1100 60.1
TPR.G12094 Trifolium pratense HOM05D003523 ORTHO05D004493 0.0e+00 1223.8 856 73.6
GSVIVG01002029001 Vitis vinifera HOM05D003523 ORTHO05D004493 0.0e+00 1216.4 810 76.9
CAN.G1164.6 Capsicum annuum HOM05D003523 ORTHO05D004493 0.0e+00 1171.4 890 70.8
Psat1g206120 Pisum sativum HOM05D003523 ORTHO05D004493 0.0e+00 1092.4 937 62.0
Dinv40538 Davidia involucrata HOM05D003523 ORTHO05D004493 0.0e+00 1080.5 687 81.5
Mapoly0126s0036 Marchantia polymorpha HOM05D003523 ORTHO05D004493 4.2e-297 1025.0 1137 48.7
Pp3c9_3120 Physcomitrium patens HOM05D003523 ORTHO05D004493 1.2e-294 1016.9 1125 49.6
SHI01792 Sapria himalayana HOM05D003523 ORTHO05D004493 4.4e-270 935.3 914 56.2
MD05G1315900 Malus domestica HOM05D003523 ORTHO05D004493 3.2e-244 849.4 927 52.6
AagrBONN_evm.TU.Sc2ySwM_117.3890 Anthoceros agrestis HOM05D003523 ORTHO05D004493 3.5e-243 845.9 975 47.9
Cpa.g.sc27.67 Carica papaya HOM05D003523 ORTHO05D004493 4.8e-200 702.6 497 74.6
SEGI_00038 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 1.2e-174 618.2 465 66.2
Medtr2g013180 Medicago truncatula HOM05D003523 ORTHO05D004493 5.0e-157 559.7 479 61.8
MD05G1315300 Malus domestica HOM05D003523 ORTHO05D004493 3.6e-155 553.5 722 46.1
CBR_g31987 Chara braunii HOM05D003523 ORTHO05D004493 1.1e-146 525.4 1220 31.6
Cpa.g.sc3186.1 Carica papaya HOM05D003523 ORTHO05D004493 8.3e-144 515.8 355 73.2
GSVIVG01002224001 Vitis vinifera HOM05D003523 ORTHO05D004493 1.4e-138 498.4 353 72.0
Lsat_1_v5_gn_7_19601 Lactuca sativa HOM05D003523 ORTHO05D004493 1.3e-128 465.3 365 70.1
TPR.G12099 Trifolium pratense HOM05D003523 ORTHO05D004493 1.2e-113 415.6 235 81.3
CAN.G1164.7 Capsicum annuum HOM05D003523 ORTHO05D004493 2.9e-112 411.0 234 82.9
arahy.Tifrunner.gnm1.ann1.PB6F44 Arachis hypogaea HOM05D003523 ORTHO05D004493 1.8e-101 375.2 288 67.4
Lsat_1_v5_gn_7_19581 Lactuca sativa HOM05D003523 ORTHO05D004493 2.5e-95 354.8 232 72.0
SEGI_03870 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 9.7e-92 342.8 299 64.5
SEGI_30667 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 3.7e-91 340.9 242 66.9
Medtr2g013190 Medicago truncatula HOM05D003523 ORTHO05D004493 3.3e-84 317.8 305 57.0
Glyma.15G072332 Glycine max HOM05D003523 ORTHO05D004493 4.2e-79 300.8 176 77.8
SHI01796 Sapria himalayana HOM05D003523 ORTHO05D004493 1.4e-66 259.2 195 66.2
Medtr1g072060 Medicago truncatula HOM05D003523 ORTHO05D004493 8.0e-62 243.4 382 40.1
Medtr1g072070 Medicago truncatula HOM05D003523 ORTHO05D004493 6.8e-61 240.4 364 43.4
Oeu047005.1 Olea europaea HOM05D003523 ORTHO05D004493 2.7e-57 228.4 252 50.8
TPR.G15630 Trifolium pratense HOM05D003523 ORTHO05D004493 4.2e-55 221.1 295 47.5
Glyma.15G072266 Glycine max HOM05D003523 ORTHO05D004493 1.3e-48 199.5 192 56.8
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 1.2e-46 193.0 232 49.1
Medtr2g013150 Medicago truncatula HOM05D003523 ORTHO05D004493 3.2e-42 178.3 154 62.3
Lsat_1_v5_gn_4_122420 Lactuca sativa HOM05D003523 ORTHO05D004493 4.0e-37 161.4 124 68.5
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 2.6e-36 158.7 121 67.8
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 3.1e-29 135.2 108 63.9
MD05G1316000 Malus domestica HOM05D000005 ORTHO05D000012 5.8e-28 131.0 71 80.3
GSVIVG01004520001 Vitis vinifera HOM05D003523 ORTHO05D004493 1.2e-25 123.2 64 81.2
COL.COLO4_31495 Corchorus olitorius HOM05D003523 ORTHO05D004493 2.3e-24 119.0 61 85.2
GSVIVG01004519001 Vitis vinifera HOM05D003523 ORTHO05D004493 3.3e-23 115.2 57 91.2
COL.COLO4_31503 Corchorus olitorius HOM05D003305 ORTHO05D001298 1.6e-22 112.8 282 34.0
Psat1g020360 Pisum sativum HOM05D003523 ORTHO05D014542 2.8e-22 112.1 79 67.1
COL.COLO4_06329 Corchorus olitorius HOM05D003523 ORTHO05D004493 6.2e-22 110.9 61 78.7
Medtr4g010370 Medicago truncatula HOM05D003523 ORTHO05D004493 1.4e-21 109.8 73 65.8
COL.COLO4_06328 Corchorus olitorius HOM05D003523 ORTHO05D004493 2.2e-19 102.4 70 80.0
Medtr5g040120 Medicago truncatula HOM05D003523 ORTHO05D004493 8.4e-19 100.5 68 67.6
Psat6g243040 Pisum sativum HOM05D003523 ORTHO05D004493 1.1e-18 100.1 80 57.5
Medtr7g039500 Medicago truncatula HOM05D003523 ORTHO05D004493 9.2e-18 97.1 79 62.0
Psat0s4489g0120 Pisum sativum HOM05D003523 ORTHO05D004493 2.7e-17 95.5 67 67.2
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 2.3e-16 92.4 116 47.4
Psat0s3229g0080 Pisum sativum HOM05D003523 ORTHO05D004493 2.1e-14 85.9 49 75.5
arahy.Tifrunner.gnm1.ann1.XFU5ID Arachis hypogaea HOM05D003523 ORTHO05D004493 2.6e-12 79.0 44 81.8
Lsat_1_v5_gn_6_47040 Lactuca sativa HOM05D002560 ORTHO05D013255 2.6e-12 79.0 61 68.9
EL10Ac5g12135 Beta vulgaris HOM05D003523 ORTHO05D008367 2.2e-11 75.9 59 71.2
Eucgr.A00068 Eucalyptus grandis HOM05D003523 ORTHO05D004493 7.1e-10 70.9 80 47.5
CAN.G330.11 Capsicum annuum HOM05D000087 ORTHO05D115501 9.3e-10 70.5 93 44.1
Lsat_1_v5_gn_8_47460 Lactuca sativa HOM05D003523 ORTHO05D004021 1.3e-08 66.6 58 55.2
Medtr3g057920 Medicago truncatula HOM05D003523 ORTHO05D004493 1.3e-06 60.1 93 40.9
Lsat_1_v5_gn_6_40740 Lactuca sativa HOM05D000146 ORTHO05D002370 2.1e-06 59.3 33 81.8
Lsat_1_v5_gn_8_41901 Lactuca sativa HOM05D003523 ORTHO05D232231 2.1e-06 59.3 33 81.8
Lsat_1_v5_gn_9_124840 Lactuca sativa HOM05D003523 ORTHO05D233239 2.8e-06 58.9 33 81.8
Lsat_1_v5_gn_6_42641 Lactuca sativa HOM05D000146 ORTHO05D002370 8.1e-06 57.4 33 78.8
Medtr3g057930 Medicago truncatula HOM05D003523 ORTHO05D259677 8.1e-06 57.4 140 37.9


User provided reference genes

Program Settings