Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0445 Trochodendron aralioides HOM05D001529 ORTHO05D012725 4.4e-40 167.5 86 100.0
TAR629G2761 Trochodendron aralioides HOM05D001529 ORTHO05D003309 1.9e-19 99.0 56 91.1
Nn1g08713 Nelumbo nucifera HOM05D001529 ORTHO05D003309 1.2e-18 96.3 56 87.5
Nn5g28174 Nelumbo nucifera HOM05D001529 ORTHO05D003309 1.6e-18 95.9 56 89.3
Lj3C1050G12 Lonicera japonica HOM05D001529 ORTHO05D003309 1.0e-17 93.2 56 85.7
Ca_04612_v3 Cicer arietinum L. HOM05D001529 ORTHO05D003309 1.4e-17 92.8 56 85.7
CsaV3_5G015730 Cucumis sativus L. HOM05D001529 ORTHO05D003309 1.8e-17 92.4 56 85.7
Oeu022552.3 Olea europaea HOM05D001529 ORTHO05D003309 1.8e-17 92.4 56 83.9
Lj2g0017933 Lotus japonicus HOM05D001529 ORTHO05D003309 5.2e-17 90.9 56 83.9
Lalb_Chr16g0382401 Lupinus albus HOM05D001529 ORTHO05D003309 5.2e-17 90.9 56 83.9
ClCG11G000210 Citrullus lanatus HOM05D001529 ORTHO05D003309 6.8e-17 90.5 56 83.9
Lsat_1_v5_gn_4_7120 Lactuca sativa HOM05D001529 ORTHO05D003309 8.8e-17 90.1 56 82.1
CDE05G0643 Ceratophyllum demersum HOM05D001529 ORTHO05D003309 1.2e-16 89.7 56 80.4
Dinv24886 Davidia involucrata HOM05D001529 ORTHO05D003309 1.2e-16 89.7 59 79.7
CiPaw.06G073200 Carya illinoinensis HOM05D001529 ORTHO05D003309 1.5e-16 89.4 56 82.1
MBI04_g06583_MAGBIO Magnolia biondii HOM05D001529 ORTHO05D003309 1.5e-16 89.4 56 80.4
Cfa006930 Carpinus fangiana HOM05D001529 ORTHO05D003309 2.0e-16 89.0 56 82.1
Cfa009117 Carpinus fangiana HOM05D001529 ORTHO05D003309 2.0e-16 89.0 56 82.1
Lalb_Chr09g0326441 Lupinus albus HOM05D001529 ORTHO05D003309 2.0e-16 89.0 56 82.1
Psat2g107000 Pisum sativum HOM05D001529 ORTHO05D003309 2.0e-16 89.0 56 80.4
CiPaw.05G147900 Carya illinoinensis HOM05D001529 ORTHO05D003309 2.6e-16 88.6 56 80.4
Haze_12153 Corylus avellana HOM05D001529 ORTHO05D003309 2.6e-16 88.6 56 80.4
Eucgr.B03357 Eucalyptus grandis HOM05D001529 ORTHO05D003309 2.6e-16 88.6 56 80.4
Manes.05G088800 Manihot esculenta HOM05D001529 ORTHO05D003309 2.6e-16 88.6 56 82.1
HanXRQChr12g0383391 Helianthus annuus HOM05D001529 ORTHO05D003309 3.4e-16 88.2 56 80.4
ATR1149G120 Amborella trichopoda HOM05D001529 ORTHO05D003309 4.4e-16 87.8 56 80.4
THA.LOC104822129 Tarenaya hassleriana HOM05D001529 ORTHO05D003309 5.7e-16 87.4 56 78.6
TPR.G8796 Trifolium pratense HOM05D001529 ORTHO05D012725 5.7e-16 87.4 56 80.4
CANSAT01G1270 Cannabis sativa HOM05D001529 ORTHO05D003309 7.5e-16 87.0 56 80.4
GSVIVG01020206001 Vitis vinifera HOM05D001529 ORTHO05D003309 7.5e-16 87.0 56 78.6
Phvul.002G072800 Phaseolus vulgaris HOM05D001529 ORTHO05D003309 9.8e-16 86.7 56 78.6
HanXRQChr15g0469351 Helianthus annuus HOM05D001529 ORTHO05D003309 1.3e-15 86.3 56 76.8
Sed0004308 Sechium edule HOM05D001529 ORTHO05D003309 1.3e-15 86.3 56 80.4
Aqoxy2G01584 Aquilegia oxysepala HOM05D001529 ORTHO05D012725 1.7e-15 85.9 62 72.6
Cpa.g.sc258.12 Carica papaya HOM05D001529 ORTHO05D003309 1.7e-15 85.9 56 80.4
ECA234G4010 Erigeron canadensis HOM05D001529 ORTHO05D003309 1.7e-15 85.9 56 78.6
PGR102G2790 Punica granatum HOM05D001529 ORTHO05D003309 1.7e-15 85.9 56 78.6
TWI36G0528 Tripterygium wilfordii HOM05D001529 ORTHO05D003309 1.7e-15 85.9 56 78.6
Medtr5g034820 Medicago truncatula HOM05D001529 ORTHO05D003309 2.2e-15 85.5 56 78.6
TWI18G0452 Tripterygium wilfordii HOM05D001529 ORTHO05D003309 2.2e-15 85.5 56 76.8
VMungo1215G0655 Vigna mungo HOM05D001529 ORTHO05D003309 2.2e-15 85.5 56 76.8
CDE05G3145 Ceratophyllum demersum HOM05D001529 ORTHO05D003309 2.8e-15 85.1 56 76.8
THA.LOC104808916 Tarenaya hassleriana HOM05D001529 ORTHO05D003309 2.8e-15 85.1 56 76.8
Cc11_g14420 Coffea canephora HOM05D001529 ORTHO05D003309 3.7e-15 84.7 56 76.8
Lsat_1_v5_gn_4_126221 Lactuca sativa HOM05D001529 ORTHO05D003309 3.7e-15 84.7 70 65.7
ECA240G3521 Erigeron canadensis HOM05D001529 ORTHO05D003309 6.3e-15 84.0 56 76.8
Aqoxy4G00290 Aquilegia oxysepala HOM05D001529 ORTHO05D003309 8.3e-15 83.6 56 76.8
QL03p061952 Quercus lobata HOM05D001529 ORTHO05D003309 1.4e-14 82.8 55 76.4
BolC3t15794H Brassica oleracea HOM05D001529 ORTHO05D012725 2.4e-14 82.0 69 63.8
BolC7t46472H Brassica oleracea HOM05D001529 ORTHO05D012725 2.4e-14 82.0 69 63.8
Glyma.02G032800 Glycine max HOM05D001529 ORTHO05D003309 2.4e-14 82.0 56 76.8
TPR.G12365 Trifolium pratense HOM05D001529 ORTHO05D003309 2.4e-14 82.0 56 76.8
GSVIVG01014680001 Vitis vinifera HOM05D001529 ORTHO05D003309 2.4e-14 82.0 56 75.0
AL6G38710 Arabidopsis lyrata HOM05D001529 ORTHO05D003309 5.4e-14 80.9 54 75.9
Oeu062773.1 Olea europaea HOM05D001529 ORTHO05D003309 5.4e-14 80.9 74 63.5
Carub.0006s2450 Capsella rubella HOM05D001529 ORTHO05D003309 9.1e-14 80.1 54 75.9
AT5G26830 Arabidopsis thaliana HOM05D001529 ORTHO05D003309 1.2e-13 79.7 54 77.8
Thhalv10003725m.g Eutrema salsugineum HOM05D001529 ORTHO05D003309 1.2e-13 79.7 56 73.2
LjContig00029g0011661 Lotus japonicus HOM05D001529 ORTHO05D003309 1.2e-13 79.7 56 71.4
Sp2g21160 Schrenkiella parvula HOM05D001529 ORTHO05D003309 1.2e-13 79.7 56 73.2
BcaNung03670 Brassica carinata HOM05D001529 ORTHO05D003309 1.6e-13 79.3 56 73.2
BcaNung03917 Brassica carinata HOM05D001529 ORTHO05D003309 1.6e-13 79.3 56 73.2
A06p37060 Brassica napus HOM05D001529 ORTHO05D003309 1.6e-13 79.3 56 73.2
C07p41380 Brassica napus HOM05D001529 ORTHO05D003309 1.6e-13 79.3 56 73.2
BolC7t44668H Brassica oleracea HOM05D001529 ORTHO05D003309 1.6e-13 79.3 56 73.2
BraA06t26631Z Brassica rapa HOM05D001529 ORTHO05D003309 1.6e-13 79.3 56 73.2
RcHm_v2.0_Chr4g0400731 Rosa chinensis HOM05D001529 ORTHO05D003309 1.6e-13 79.3 56 73.2
Glyma.01G032500 Glycine max HOM05D001529 ORTHO05D003309 2.0e-13 79.0 56 73.2
SEGI_40352 Sequoiadendron giganteum HOM05D001529 ORTHO05D003309 2.0e-13 79.0 56 71.4
A09p05640 Brassica napus HOM05D001529 ORTHO05D003309 2.7e-13 78.6 62 66.1
ECA246G3900 Erigeron canadensis HOM05D000402 ORTHO05D000263 2.7e-13 78.6 56 71.4
Potri.008G145600 Populus trichocarpa HOM05D001529 ORTHO05D003309 2.7e-13 78.6 56 76.8
Potri.010G096500 Populus trichocarpa HOM05D001529 ORTHO05D003309 2.7e-13 78.6 56 75.0
Aqoxy4G01961 Aquilegia oxysepala HOM05D001529 ORTHO05D003309 3.5e-13 78.2 56 73.2
CARHR186700 Cardamine hirsuta HOM05D001529 ORTHO05D003309 3.5e-13 78.2 54 74.1
BcaB04g19710 Brassica carinata HOM05D001529 ORTHO05D003309 4.5e-13 77.8 56 71.4
BraA09t36206Z Brassica rapa HOM05D001529 ORTHO05D003309 4.5e-13 77.8 56 71.4
CSS0022154 Camellia sinensis var. sinensis HOM05D001529 ORTHO05D003309 4.5e-13 77.8 56 75.0
Ca_05005_v3 Cicer arietinum L. HOM05D001529 ORTHO05D012725 4.5e-13 77.8 57 71.9
Ca_15408_v3 Cicer arietinum L. HOM05D001529 ORTHO05D003309 7.7e-13 77.0 56 67.9
Ca_29881_v3 Cicer arietinum L. HOM05D001529 ORTHO05D003309 7.7e-13 77.0 56 67.9
Ciclev10030825m.g Citrus clementina HOM05D001529 ORTHO05D003309 7.7e-13 77.0 56 71.4
PSO063G6003 Papaver somniferum HOM05D001529 ORTHO05D003309 7.7e-13 77.0 56 71.4
Aa31LG7G7800 Aethionema arabicum HOM05D001529 ORTHO05D003309 1.0e-12 76.6 56 71.4
BcaB04g19712 Brassica carinata HOM05D001529 ORTHO05D003309 1.0e-12 76.6 56 69.6
C09p06250 Brassica napus HOM05D001529 ORTHO05D003309 1.0e-12 76.6 56 69.6
BolC9t53545H Brassica oleracea HOM05D001529 ORTHO05D003309 1.0e-12 76.6 56 69.6
Sabra08G0110600 Salix brachista HOM05D001529 ORTHO05D003309 1.0e-12 76.6 56 73.2
SalBow4G1852 Salvia bowleyana HOM05D001529 ORTHO05D003309 1.0e-12 76.6 56 69.6
TPR.G32383 Trifolium pratense HOM05D001529 ORTHO05D003309 1.0e-12 76.6 49 79.6
HPP92_003784 Vanilla planifolia HOM05D001529 ORTHO05D003309 1.0e-12 76.6 56 71.4
Duzib248G1216 Durio zibethinus HOM05D001529 ORTHO05D003309 1.3e-12 76.3 56 73.2
Atru.chr11.1993 Acer truncatum HOM05D001529 ORTHO05D003309 1.7e-12 75.9 53 73.6
FvH4_4g07690 Fragaria vesca HOM05D001529 ORTHO05D003309 2.3e-12 75.5 56 69.6
FAN12G3914 Fragaria x ananassa HOM05D001529 ORTHO05D003309 2.3e-12 75.5 56 69.6
Os08g0295300 Oryza sativa ssp. japonica HOM05D001529 ORTHO05D003309 2.3e-12 75.5 54 70.4
PGSC0003DMG400046771 Solanum tuberosum HOM05D001529 ORTHO05D003309 2.3e-12 75.5 56 67.9
Duzib268G0961 Durio zibethinus HOM05D001529 ORTHO05D003309 2.9e-12 75.1 56 73.2
Ca_11546_v3 Cicer arietinum L. HOM05D001529 ORTHO05D012725 3.8e-12 74.7 56 71.4
PSO782G3052 Papaver somniferum HOM05D001529 ORTHO05D003309 3.8e-12 74.7 56 67.9
CAN.G195.27 Capsicum annuum HOM05D001529 ORTHO05D003309 5.0e-12 74.3 56 67.9
Prupe.1G256800 Prunus persica HOM05D001529 ORTHO05D003309 5.0e-12 74.3 56 67.9
MSTRG.8760 Avicennia marina HOM05D001529 ORTHO05D003309 6.6e-12 73.9 56 66.1
Gohir.A12G053900 Gossypium hirsutum HOM05D001529 ORTHO05D003309 6.6e-12 73.9 56 67.9
Nitab4.5_0000059g0050 Nicotiana tabacum HOM05D001529 ORTHO05D003309 6.6e-12 73.9 56 66.1
Ca_18729_v3 Cicer arietinum L. HOM05D001529 ORTHO05D012725 8.6e-12 73.6 56 69.6
Ca_28332_v3 Cicer arietinum L. HOM05D001529 ORTHO05D012725 8.6e-12 73.6 56 69.6
FAN22G1261 Fragaria x ananassa HOM05D001529 ORTHO05D003309 8.6e-12 73.6 56 67.9
Rhsim12G0048100 Rhododendron simsii HOM05D001529 ORTHO05D003309 8.6e-12 73.6 56 69.6
Thecc.02G246500 Theobroma cacao HOM05D001529 ORTHO05D003309 8.6e-12 73.6 56 69.6
COL.COLO4_19527 Corchorus olitorius HOM05D001529 ORTHO05D003309 1.5e-11 72.8 56 67.9
MD13G1089000 Malus domestica HOM05D001529 ORTHO05D003309 1.5e-11 72.8 56 66.1
MD16G1089100 Malus domestica HOM05D001529 ORTHO05D003309 1.5e-11 72.8 56 66.1
Solyc08g074550.3 Solanum lycopersicum HOM05D001529 ORTHO05D003309 1.5e-11 72.8 56 66.1
FAN17G1607 Fragaria x ananassa HOM05D001529 ORTHO05D003309 1.9e-11 72.4 56 66.1
Gohir.D12G050400 Gossypium hirsutum HOM05D001529 ORTHO05D003309 1.9e-11 72.4 56 66.1
Gorai.008G053600 Gossypium raimondii HOM05D001529 ORTHO05D003309 1.9e-11 72.4 56 66.1
Actinidia15026 Actinidia chinensis HOM05D001529 ORTHO05D012725 2.5e-11 72.0 65 58.5
CAN.G205.14 Capsicum annuum HOM05D001529 ORTHO05D003309 2.5e-11 72.0 56 64.3
Solyc05g005800.4 Solanum lycopersicum HOM05D001529 ORTHO05D003309 2.5e-11 72.0 56 64.3
SGA_v2.0_scaffold43G16337 Striga asiatica HOM05D001529 ORTHO05D003309 2.5e-11 72.0 56 66.1
vmacro01191 Vaccinium macrocarpon HOM05D001529 ORTHO05D003309 3.3e-11 71.6 59 69.5
vmacro12521 Vaccinium macrocarpon HOM05D001529 ORTHO05D003309 3.3e-11 71.6 76 60.5
vmacro22610 Vaccinium macrocarpon HOM05D001529 ORTHO05D003309 3.3e-11 71.6 59 69.5
arahy.Tifrunner.gnm1.ann1.WGVK9W Arachis hypogaea HOM05D001529 ORTHO05D003309 4.2e-11 71.2 56 67.9
Migut.F00372 Erythranthe guttata HOM05D001529 ORTHO05D003309 4.2e-11 71.2 54 63.0
Nitab4.5_0002198g0010 Nicotiana tabacum HOM05D001529 ORTHO05D003309 4.2e-11 71.2 56 64.3
Sopen05g001810 Solanum pennellii HOM05D001529 ORTHO05D003309 4.2e-11 71.2 56 64.3
AUR62017716 Chenopodium quinoa HOM05D001529 ORTHO05D003309 5.5e-11 70.9 56 64.3
Peaxi162Scf00445g01023 Petunia axillaris HOM05D001529 ORTHO05D003309 5.5e-11 70.9 56 64.3
Prupe.8G074400 Prunus persica HOM05D001529 ORTHO05D003309 5.5e-11 70.9 56 64.3
Sopen08g023160 Solanum pennellii HOM05D001529 ORTHO05D003309 5.5e-11 70.9 56 64.3
Nitab4.5_0000052g0290 Nicotiana tabacum HOM05D001529 ORTHO05D003309 7.2e-11 70.5 56 64.3
unitig_0.g2778 Utricularia gibba HOM05D001529 ORTHO05D003309 7.2e-11 70.5 56 66.1
Oeu004131.1 Olea europaea HOM05D001529 ORTHO05D003309 1.2e-10 69.7 56 64.3
Sc21g0002330 Simmondsia chinensis HOM05D001529 ORTHO05D003309 1.2e-10 69.7 56 64.3
arahy.Tifrunner.gnm1.ann1.77WG3J Arachis hypogaea HOM05D001529 ORTHO05D003309 1.6e-10 69.3 50 70.0
Prupe.8G070800 Prunus persica HOM05D001529 ORTHO05D003309 1.6e-10 69.3 56 62.5
CBR_g9037 Chara braunii HOM05D001529 ORTHO05D003309 2.1e-10 68.9 64 54.7
Eucgr.I00127 Eucalyptus grandis HOM05D001529 ORTHO05D003309 2.1e-10 68.9 56 64.3
Ah.01g012480 Amaranthus hybridus HOM05D001529 ORTHO05D003309 2.8e-10 68.6 56 62.5
CAN.G337.76 Capsicum annuum HOM05D001529 ORTHO05D003309 2.8e-10 68.6 56 62.5
SHI34429 Sapria himalayana HOM05D001529 ORTHO05D003309 2.8e-10 68.6 50 68.0
EL10Ac9g22967 Beta vulgaris HOM05D001529 ORTHO05D003309 4.7e-10 67.8 56 62.5
Peaxi162Scf00064g00054 Petunia axillaris HOM05D001529 ORTHO05D003309 4.7e-10 67.8 56 62.5
AUR62032963 Chenopodium quinoa HOM05D001529 ORTHO05D003309 6.1e-10 67.4 56 62.5
Nitab4.5_0000328g0020 Nicotiana tabacum HOM05D001529 ORTHO05D003309 8.0e-10 67.0 56 62.5
Pp3c20_19020 Physcomitrium patens HOM05D001529 ORTHO05D003309 1.0e-09 66.6 56 55.4
CSS0025151 Camellia sinensis var. sinensis HOM05D001529 ORTHO05D003309 1.4e-09 66.2 56 64.3
DCAR_007098 Daucus carota HOM05D001529 ORTHO05D003309 1.4e-09 66.2 56 62.5
Cfa020353 Carpinus fangiana HOM05D001529 ORTHO05D003309 2.3e-09 65.5 62 62.9
Nitab4.5_0002287g0040 Nicotiana tabacum HOM05D001529 ORTHO05D003309 3.0e-09 65.1 56 62.5
Zm00001eb045520 Zea mays HOM05D001529 ORTHO05D003309 3.0e-09 65.1 54 59.3
arahy.Tifrunner.gnm1.ann1.GD50BS Arachis hypogaea HOM05D001529 ORTHO05D003309 4.0e-09 64.7 44 77.3
Zm00001eb217950 Zea mays HOM05D001529 ORTHO05D003309 4.0e-09 64.7 54 59.3
Hund08612 Selenicereus undatus HOM05D001529 ORTHO05D003309 1.2e-08 63.2 50 62.0
SGA_v2.0_scaffold232G43521 Striga asiatica HOM05D001529 ORTHO05D003309 1.2e-08 63.2 59 57.6
FvH4_6g47820 Fragaria vesca HOM05D001529 ORTHO05D003309 1.5e-08 62.8 58 56.9
FAN09G2777 Fragaria x ananassa HOM05D001529 ORTHO05D012725 1.5e-08 62.8 58 56.9
FvH4_3g11970 Fragaria vesca HOM05D001529 ORTHO05D003309 2.6e-08 62.0 51 66.7
Mapoly0065s0074 Marchantia polymorpha HOM05D001529 ORTHO05D003309 2.6e-08 62.0 56 57.1
AagrBONN_evm.TU.Sc2ySwM_344.173 Anthoceros agrestis HOM05D001529 ORTHO05D003309 3.4e-08 61.6 56 58.9
arahy.Tifrunner.gnm1.ann1.N1MFUI Arachis hypogaea HOM05D001529 ORTHO05D003309 4.4e-08 61.2 68 55.9
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 4.9e-07 57.8 56 58.9
Aa31LG7G2950 Aethionema arabicum HOM05D001529 ORTHO05D003309 1.4e-06 56.2 76 48.7
A09p60040 Brassica napus HOM05D001529 ORTHO05D003309 2.4e-06 55.5 56 55.4
BolC8t51996H Brassica oleracea HOM05D001529 ORTHO05D003309 2.4e-06 55.5 56 55.4
BraA09t41374Z Brassica rapa HOM05D001529 ORTHO05D003309 2.4e-06 55.5 56 55.4
Carub.0001s1958 Capsella rubella HOM05D001529 ORTHO05D003309 5.4e-06 54.3 56 53.6
BcaC07g41339 Brassica carinata HOM05D001529 ORTHO05D003309 7.0e-06 53.9 56 53.6


User provided reference genes

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