Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 2.2e-41 171.8 83 100.0
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 4.1e-27 124.4 61 98.4
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 5.3e-19 97.4 72 69.4
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 1.2e-18 96.3 61 73.8
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 1.6e-18 95.9 58 70.7
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 2.7e-18 95.1 58 70.7
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 3.5e-18 94.7 61 70.5
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 4.5e-18 94.4 61 75.4
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 7.7e-18 93.6 72 65.3
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 1.0e-17 93.2 58 74.1
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 1.0e-17 93.2 67 59.7
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 1.3e-17 92.8 72 65.3
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 1.3e-17 92.8 72 65.3
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 1.3e-17 92.8 72 65.3
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 1.3e-17 92.8 61 73.8
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 1.3e-17 92.8 72 65.3
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 1.7e-17 92.4 58 72.4
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 1.7e-17 92.4 76 56.6
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 2.2e-17 92.0 61 72.1
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 2.2e-17 92.0 62 67.7
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 2.2e-17 92.0 61 68.9
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 2.2e-17 92.0 72 63.9
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 3.8e-17 91.3 85 55.3
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 8.5e-17 90.1 62 64.5
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 1.1e-16 89.7 61 70.5
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 1.9e-16 89.0 58 69.0
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 1.9e-16 89.0 63 66.7
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 2.5e-16 88.6 63 63.5
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 5.5e-16 87.4 57 73.7
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 5.5e-16 87.4 58 63.8
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 5.5e-16 87.4 60 63.3
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 5.5e-16 87.4 61 67.2
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 7.2e-16 87.0 58 69.0
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 1.2e-15 86.3 58 62.1
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 1.2e-15 86.3 61 62.3
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 2.7e-15 85.1 60 56.7
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 3.6e-15 84.7 60 66.7
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 3.6e-15 84.7 60 61.7
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 3.6e-15 84.7 60 61.7
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 3.6e-15 84.7 60 58.3
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 4.7e-15 84.3 58 60.3
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 4.7e-15 84.3 55 70.9
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 6.1e-15 84.0 59 61.0
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 8.0e-15 83.6 58 69.0
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 8.0e-15 83.6 58 69.0
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 8.0e-15 83.6 58 69.0
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 1.8e-14 82.4 58 60.3
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 2.3e-14 82.0 57 68.4
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 5.2e-14 80.9 71 54.9
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 5.2e-14 80.9 71 54.9
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 1.2e-13 79.7 58 56.9
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 1.2e-13 79.7 60 58.3
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 2.0e-13 79.0 58 58.6
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 2.0e-13 79.0 58 56.9
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 2.6e-13 78.6 73 52.1
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 2.6e-13 78.6 61 59.0
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 3.4e-13 78.2 58 55.2
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 3.4e-13 78.2 58 55.2
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 3.4e-13 78.2 58 62.1
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 4.4e-13 77.8 58 60.3
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 5.7e-13 77.4 66 56.1
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 5.7e-13 77.4 61 60.7
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 7.5e-13 77.0 58 56.9
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 1.7e-12 75.9 61 59.0
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 1.7e-12 75.9 61 59.0
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 2.2e-12 75.5 58 56.9
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 2.2e-12 75.5 61 57.4
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 2.8e-12 75.1 59 55.9
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 2.8e-12 75.1 65 55.4
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 3.7e-12 74.7 61 63.9
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 3.7e-12 74.7 56 62.5
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 4.8e-12 74.3 59 59.3
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 8.3e-12 73.6 58 58.6
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 8.3e-12 73.6 59 54.2
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 1.4e-11 72.8 57 63.2
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 1.8e-11 72.4 50 62.0
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 1.8e-11 72.4 58 56.9
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 2.4e-11 72.0 55 60.0
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 4.1e-11 71.2 58 65.5
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 7.0e-11 70.5 57 57.9
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 1.2e-10 69.7 56 55.4
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 2.7e-10 68.6 59 54.2
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 3.5e-10 68.2 59 55.9
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 1.3e-09 66.2 57 54.4
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 2.9e-09 65.1 56 55.4
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 1.1e-08 63.2 67 44.8
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 7.2e-08 60.5 50 64.0
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 3.6e-07 58.2 57 56.1
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 6.1e-07 57.4 56 53.6
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 2.3e-06 55.5 82 43.9
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 2.3e-06 55.5 59 50.8


User provided reference genes

Program Settings