Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 2.3e-143 512.3 277 100.0
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 9.8e-118 427.2 277 82.3
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 1.7e-117 426.4 278 81.3
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.9e-117 425.6 276 81.2
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 6.4e-117 424.5 276 79.3
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 6.4e-117 424.5 278 80.9
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.4e-116 422.5 276 80.8
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 7.0e-116 421.0 279 81.4
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 1.2e-115 420.2 263 83.3
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.2e-115 420.2 277 83.4
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 6.0e-115 417.9 279 80.6
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 3.0e-114 415.6 279 79.2
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 6.6e-114 414.5 273 79.9
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 1.9e-113 412.9 275 78.2
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 2.1e-112 409.5 277 79.1
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 8.1e-112 407.5 280 78.6
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.1e-111 407.1 275 78.5
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 1.1e-111 407.1 281 76.9
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 4.0e-111 405.2 281 76.9
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 4.0e-111 405.2 275 77.5
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 5.2e-111 404.8 281 77.9
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 6.8e-111 404.4 279 79.2
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 6.8e-111 404.4 278 75.5
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 8.9e-111 404.1 278 78.4
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 1.2e-110 403.7 277 79.4
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 1.2e-110 403.7 276 79.3
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.0e-110 402.9 278 77.3
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 2.6e-110 402.5 277 76.5
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.6e-110 402.5 280 76.8
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.6e-110 402.5 278 77.3
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 4.4e-110 401.7 282 77.3
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 7.5e-110 401.0 281 76.9
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 7.5e-110 401.0 279 77.4
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 9.8e-110 400.6 278 77.3
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 9.8e-110 400.6 277 80.9
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 9.8e-110 400.6 280 77.1
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.3e-109 400.2 281 75.8
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.2e-109 399.4 281 75.8
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.2e-109 399.4 280 76.4
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 2.2e-109 399.4 280 76.4
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 2.9e-109 399.1 279 77.1
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 2.4e-108 396.0 280 76.4
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 5.4e-108 394.8 279 77.8
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 1.6e-107 393.3 282 75.2
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 1.6e-107 393.3 282 77.0
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.7e-107 392.5 281 75.1
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 2.7e-107 392.5 283 74.9
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 3.5e-107 392.1 283 74.9
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 4.6e-107 391.7 279 75.3
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 6.0e-107 391.3 278 77.7
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 6.0e-107 391.3 278 77.7
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 7.8e-107 391.0 285 75.4
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 1.0e-106 390.6 279 76.0
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 1.3e-106 390.2 280 76.8
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 2.3e-106 389.4 279 76.0
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 5.1e-106 388.3 283 74.2
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 6.6e-106 387.9 277 73.3
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 8.6e-106 387.5 278 75.2
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 1.5e-105 386.7 277 74.0
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 4.3e-105 385.2 280 74.3
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 5.6e-105 384.8 279 75.6
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 7.3e-105 384.4 278 74.8
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 9.5e-105 384.0 277 75.5
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 9.5e-105 384.0 264 79.2
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 1.2e-104 383.6 278 76.6
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 1.2e-104 383.6 280 75.0
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.6e-104 383.3 278 75.2
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 6.2e-104 381.3 277 74.7
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 8.1e-104 380.9 277 71.5
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 1.4e-103 380.2 282 72.3
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 2.3e-103 379.4 278 74.5
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 3.1e-103 379.0 279 74.2
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 5.2e-103 378.3 278 73.4
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 1.2e-102 377.1 276 75.0
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 1.2e-102 377.1 276 75.0
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.5e-102 376.7 276 74.6
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 3.4e-102 375.6 278 73.7
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 4.4e-102 375.2 276 73.9
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 5.8e-102 374.8 276 72.5
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 5.8e-102 374.8 278 71.2
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 1.7e-101 373.2 276 72.1
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 1.7e-101 373.2 276 72.1
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 1.7e-101 373.2 276 72.1
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 1.7e-101 373.2 276 72.1
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 1.7e-101 373.2 276 72.1
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 3.7e-101 372.1 276 73.2
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 6.4e-101 371.3 275 73.1
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 1.1e-100 370.5 278 73.4
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 1.4e-100 370.2 280 73.9
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 1.4e-100 370.2 279 74.2
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 1.4e-100 370.2 282 72.3
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 1.9e-100 369.8 276 71.7
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 4.1e-100 368.6 276 72.8
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 5.4e-100 368.2 276 72.1
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 7.1e-100 367.9 277 71.8
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 7.1e-100 367.9 277 71.8
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 7.1e-100 367.9 277 72.9
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 7.1e-100 367.9 281 74.4
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 7.1e-100 367.9 276 72.1
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 9.2e-100 367.5 277 72.9
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.2e-99 367.1 273 72.2
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 1.6e-99 366.7 276 71.4
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 1.6e-99 366.7 276 71.4
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 1.6e-99 366.7 279 73.8
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 3.5e-99 365.5 277 71.5
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 3.5e-99 365.5 252 79.0
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 4.6e-99 365.2 272 72.8
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 2.3e-98 362.8 278 71.6
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 2.3e-98 362.8 277 71.8
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 8.6e-98 360.9 281 70.8
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 2.5e-97 359.4 277 71.5
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 2.5e-97 359.4 275 70.9
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 3.3e-97 359.0 198 89.9
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 4.3e-97 358.6 239 79.5
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 9.6e-97 357.5 224 84.4
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 8.9e-95 350.9 215 81.9
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 2.7e-91 339.3 194 87.1
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 2.4e-84 316.2 197 80.7
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 3.2e-84 315.8 211 75.8
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 6.0e-83 311.6 285 61.1
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 4.3e-81 305.4 242 70.7
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 2.6e-78 296.2 213 70.9
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 4.5e-78 295.4 170 86.5
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 8.7e-74 281.2 196 79.1
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 6.2e-72 275.0 197 76.6
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 7.1e-68 261.5 163 83.4
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 1.1e-63 247.7 134 93.3
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 1.5e-62 243.8 203 68.5
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 1.1e-60 237.7 161 73.3
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 5.3e-55 218.8 165 66.1
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 6.1e-51 205.3 277 50.9
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 8.5e-45 184.9 156 67.9
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.1e-43 180.3 125 74.4
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 3.6e-43 179.5 231 54.1
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 2.8e-40 169.9 96 87.5
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 3.2e-36 156.4 213 45.1
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 3.2e-36 156.4 213 45.1
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 5.0e-21 105.9 81 75.3
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 1.9e-20 104.0 115 53.0
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 6.1e-11 72.4 183 30.1
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 8.0e-11 72.0 150 34.7
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 2.2e-08 63.9 35 85.7
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.1e-07 61.6 35 85.7
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 2.4e-07 60.5 60 48.3


User provided reference genes

Program Settings