Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0670 Trochodendron aralioides HOM05D004344 ORTHO05D414076 1.9e-43 178.7 88 100.0
TAR376G0722 Trochodendron aralioides HOM05D004344 ORTHO05D006026 6.3e-10 67.4 40 70.0
Hund16343 Selenicereus undatus HOM05D004344 ORTHO05D006026 2.4e-09 65.5 40 70.0
SEGI_29171 Sequoiadendron giganteum HOM05D004344 ORTHO05D006026 3.1e-09 65.1 50 58.0
CSS0049451 Camellia sinensis var. sinensis HOM05D004344 ORTHO05D006026 4.1e-09 64.7 40 67.5
ATR0584G066 Amborella trichopoda HOM05D004344 ORTHO05D006026 9.1e-09 63.5 39 66.7
Aqoxy7G02851 Aquilegia oxysepala HOM05D004344 ORTHO05D006026 9.1e-09 63.5 40 65.0
SEGI_21985 Sequoiadendron giganteum HOM05D004344 ORTHO05D006026 1.2e-08 63.2 50 56.0
HPP92_025019 Vanilla planifolia HOM05D004344 ORTHO05D006026 1.5e-08 62.8 41 63.4
GSVIVG01022113001 Vitis vinifera HOM05D004344 ORTHO05D006026 1.5e-08 62.8 40 65.0
HPP92_025047 Vanilla planifolia HOM05D004344 ORTHO05D006026 2.0e-08 62.4 36 72.2
QL06p040994 Quercus lobata HOM05D004344 ORTHO05D006026 2.6e-08 62.0 40 65.0
Sc03g0001670 Simmondsia chinensis HOM05D004344 ORTHO05D006026 2.6e-08 62.0 40 65.0
AagrBONN_evm.TU.Sc2ySwM_344.2703__2704 Anthoceros agrestis HOM05D004344 ORTHO05D006026 3.4e-08 61.6 40 62.5
Migut.H00422 Erythranthe guttata HOM05D004344 ORTHO05D006026 3.4e-08 61.6 40 62.5
CAN.G370.48 Capsicum annuum HOM05D004344 ORTHO05D006026 4.5e-08 61.2 40 60.0
Cpa.g.sc55.134 Carica papaya HOM05D004344 ORTHO05D006026 4.5e-08 61.2 40 65.0
Hma1.2p1_0017F.1_g011490 Hydrangea macrophylla HOM05D004344 ORTHO05D006026 4.5e-08 61.2 40 62.5
Hma1.2p1_0017F.1_g011500 Hydrangea macrophylla HOM05D004344 ORTHO05D006026 4.5e-08 61.2 40 62.5
Haze_15381 Corylus avellana HOM05D004344 ORTHO05D006026 5.9e-08 60.8 40 62.5
Nitab4.5_0002029g0030 Nicotiana tabacum HOM05D004344 ORTHO05D006026 5.9e-08 60.8 40 60.0
Nitab4.5_0003519g0040 Nicotiana tabacum HOM05D004344 ORTHO05D006026 5.9e-08 60.8 40 60.0
DCAR_025744 Daucus carota HOM05D004344 ORTHO05D006026 7.7e-08 60.5 40 62.5
Solyc02g093300.3 Solanum lycopersicum HOM05D004344 ORTHO05D006026 1.0e-07 60.1 40 60.0
Sopen02g037860 Solanum pennellii HOM05D004344 ORTHO05D006026 1.0e-07 60.1 40 60.0
SGA_v2.0_scaffold46G17397 Striga asiatica HOM05D004344 ORTHO05D006026 1.0e-07 60.1 40 60.0
TWI09G1157 Tripterygium wilfordii HOM05D004344 ORTHO05D006026 1.0e-07 60.1 37 67.6
Ah.03g145340 Amaranthus hybridus HOM05D004344 ORTHO05D006026 1.3e-07 59.7 40 62.5
Dinv26836 Davidia involucrata HOM05D004344 ORTHO05D006026 1.3e-07 59.7 40 62.5
Dinv29999 Davidia involucrata HOM05D004344 ORTHO05D006026 1.3e-07 59.7 40 60.0
Peaxi162Scf00450g00127 Petunia axillaris HOM05D004344 ORTHO05D006026 1.3e-07 59.7 40 60.0
vmacro05947 Vaccinium macrocarpon HOM05D004344 ORTHO05D006026 1.3e-07 59.7 40 60.0
Nn5g30338 Nelumbo nucifera HOM05D004344 ORTHO05D006026 1.7e-07 59.3 60 48.3
Actinidia12045 Actinidia chinensis HOM05D004344 ORTHO05D006026 2.9e-07 58.5 36 69.4
CANSAT01G0155 Cannabis sativa HOM05D004344 ORTHO05D006026 2.9e-07 58.5 40 62.5
Cfa004033 Carpinus fangiana HOM05D004344 ORTHO05D006026 2.9e-07 58.5 40 60.0
Ca_24759_v3 Cicer arietinum L. HOM05D004344 ORTHO05D006026 2.9e-07 58.5 40 60.0
Ciclev10024699m.g Citrus clementina HOM05D004344 ORTHO05D006026 2.9e-07 58.5 40 62.5
Prupe.7G131600 Prunus persica HOM05D004344 ORTHO05D006026 2.9e-07 58.5 40 60.0
SGA_v2.0_scaffold15G07321 Striga asiatica HOM05D004344 ORTHO05D006026 2.9e-07 58.5 40 57.5
FAN26G0646 Fragaria x ananassa HOM05D004344 ORTHO05D006026 3.8e-07 58.2 40 57.5
Glyma.01G187400 Glycine max HOM05D004344 ORTHO05D006026 3.8e-07 58.2 50 52.0
MD02G1174400 Malus domestica HOM05D004344 ORTHO05D006026 3.8e-07 58.2 40 60.0
Oeu020531.3 Olea europaea HOM05D004344 ORTHO05D006026 3.8e-07 58.2 40 57.5
Sed0002898 Sechium edule HOM05D004344 ORTHO05D006026 3.8e-07 58.2 40 60.0
arahy.Tifrunner.gnm1.ann1.7M3CIR Arachis hypogaea HOM05D004344 ORTHO05D006026 5.0e-07 57.8 40 57.5
arahy.Tifrunner.gnm1.ann1.EE0YL2 Arachis hypogaea HOM05D004344 ORTHO05D006026 5.0e-07 57.8 40 57.5
arahy.Tifrunner.gnm1.ann1.KW6QS2 Arachis hypogaea HOM05D004344 ORTHO05D006026 5.0e-07 57.8 40 57.5
CiPaw.01G016700 Carya illinoinensis HOM05D004344 ORTHO05D006026 5.0e-07 57.8 40 60.0
Duzib147G0141 Durio zibethinus HOM05D004344 ORTHO05D006026 5.0e-07 57.8 40 60.0
Gohir.A11G193200 Gossypium hirsutum HOM05D004344 ORTHO05D006026 5.0e-07 57.8 40 60.0
Gohir.D11G200300 Gossypium hirsutum HOM05D004344 ORTHO05D006026 5.0e-07 57.8 40 60.0
Gorai.007G214600 Gossypium raimondii HOM05D004344 ORTHO05D006026 5.0e-07 57.8 40 60.0
FvH4_1g22730 Fragaria vesca HOM05D004344 ORTHO05D006026 6.5e-07 57.4 40 57.5
FAN19G2019 Fragaria x ananassa HOM05D004344 ORTHO05D006026 6.5e-07 57.4 40 57.5
FAN23G1634 Fragaria x ananassa HOM05D004344 ORTHO05D006026 6.5e-07 57.4 40 57.5
MSTRG.23740 Avicennia marina HOM05D004344 ORTHO05D006026 8.5e-07 57.0 40 55.0
Lj7C70T9 Lonicera japonica HOM05D004344 ORTHO05D006026 8.5e-07 57.0 40 55.0
Lj2g0014817 Lotus japonicus HOM05D004344 ORTHO05D006026 8.5e-07 57.0 50 50.0
Lj3g0019632 Lotus japonicus HOM05D004344 ORTHO05D006026 8.5e-07 57.0 40 57.5
TPR.G16152 Trifolium pratense HOM05D004344 ORTHO05D006026 8.5e-07 57.0 40 57.5
unitig_899.g14946 Utricularia gibba HOM05D004344 ORTHO05D006026 8.5e-07 57.0 50 50.0
Lalb_Chr09g0323231 Lupinus albus HOM05D004344 ORTHO05D006026 1.1e-06 56.6 40 57.5
Phvul.002G017900 Phaseolus vulgaris HOM05D004344 ORTHO05D006026 1.1e-06 56.6 40 57.5
Psat2g166640 Pisum sativum HOM05D004344 ORTHO05D006026 1.1e-06 56.6 40 57.5
RcHm_v2.0_Chr2g0117021 Rosa chinensis HOM05D004344 ORTHO05D006026 1.1e-06 56.6 40 57.5
VMungo1215G1933 Vigna mungo HOM05D004344 ORTHO05D006026 1.1e-06 56.6 40 57.5
Eucgr.H01686 Eucalyptus grandis HOM05D004344 ORTHO05D006026 1.4e-06 56.2 50 50.0
Rhsim10G0115900 Rhododendron simsii HOM05D004344 ORTHO05D006026 1.4e-06 56.2 40 57.5
ECA238G4385 Erigeron canadensis HOM05D004344 ORTHO05D006026 1.9e-06 55.8 40 60.0
MD15G1285400 Malus domestica HOM05D004344 ORTHO05D006026 1.9e-06 55.8 40 55.0
Medtr5g017070 Medicago truncatula HOM05D004344 ORTHO05D006026 1.9e-06 55.8 40 57.5
TPR.G38065 Trifolium pratense HOM05D004344 ORTHO05D006026 1.9e-06 55.8 40 57.5
AL8G44260 Arabidopsis lyrata HOM05D004344 ORTHO05D006026 2.5e-06 55.5 45 48.9
Carub.0008s2741 Capsella rubella HOM05D004344 ORTHO05D006026 2.5e-06 55.5 45 48.9
PGR102G1820 Punica granatum HOM05D004344 ORTHO05D006026 2.5e-06 55.5 40 55.0
Sp2g29580 Schrenkiella parvula HOM05D004344 ORTHO05D006026 2.5e-06 55.5 45 48.9
AUR62003893 Chenopodium quinoa HOM05D004344 ORTHO05D006026 3.2e-06 55.1 40 57.5
MELO3C020860.2 Cucumis melo HOM05D004344 ORTHO05D006026 3.2e-06 55.1 36 61.1
CsaV3_2G016500 Cucumis sativus L. HOM05D004344 ORTHO05D006026 3.2e-06 55.1 36 61.1
Manes.13G122900 Manihot esculenta HOM05D004344 ORTHO05D006026 3.2e-06 55.1 36 63.9
VMungo0464G2085 Vigna mungo HOM05D004344 ORTHO05D006026 3.2e-06 55.1 40 55.0
ClCG02G012370 Citrullus lanatus HOM05D004344 ORTHO05D006026 4.2e-06 54.7 40 55.0
Thhalv10003515m.g Eutrema salsugineum HOM05D004344 ORTHO05D006026 4.2e-06 54.7 45 48.9
AL8G22110 Arabidopsis lyrata HOM05D004344 ORTHO05D006026 5.5e-06 54.3 58 41.4
AT5G67100 Arabidopsis thaliana HOM05D004344 ORTHO05D006026 7.2e-06 53.9 45 46.7
BcaC06g34790 Brassica carinata HOM05D004344 ORTHO05D006026 7.2e-06 53.9 45 46.7
A07p16860 Brassica napus HOM05D004344 ORTHO05D006026 7.2e-06 53.9 45 46.7
BraA07t29411Z Brassica rapa HOM05D004344 ORTHO05D006026 7.2e-06 53.9 45 46.7
CARHR280550 Cardamine hirsuta HOM05D004344 ORTHO05D006026 7.2e-06 53.9 45 46.7
Zm00001eb146610 Zea mays HOM05D004344 ORTHO05D006026 7.2e-06 53.9 42 54.8
Aa31LG1G15620 Aethionema arabicum HOM05D004344 ORTHO05D006026 9.4e-06 53.5 45 48.9
PSO675G1845 Papaver somniferum HOM05D004344 ORTHO05D006026 9.4e-06 53.5 36 58.3


User provided reference genes

Program Settings