Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.6e-61 238.4 110 100.0
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 3.9e-25 118.2 87 63.2
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.4e-22 109.8 87 56.3
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 4.0e-22 108.2 87 57.5
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 8.9e-22 107.1 86 59.3
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 8.9e-22 107.1 87 57.5
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 4.4e-21 104.8 88 54.5
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 2.4e-19 99.0 87 55.2
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 3.2e-19 98.6 90 53.3
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 5.4e-19 97.8 79 57.0
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 4.6e-18 94.7 52 76.9
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.0e-17 93.6 52 76.9
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 5.1e-17 91.3 86 50.0
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 8.7e-17 90.5 72 56.9
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 8.7e-17 90.5 87 50.6
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 1.5e-16 89.7 87 50.6
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 1.5e-16 89.7 87 49.4
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 1.9e-16 89.4 52 75.0
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 2.5e-16 89.0 52 73.1
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 2.5e-16 89.0 52 73.1
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 4.3e-16 88.2 52 73.1
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 1.2e-15 86.7 52 75.0
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 1.2e-15 86.7 52 71.2
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.6e-15 86.3 137 36.5
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.6e-15 86.3 52 69.2
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 2.1e-15 85.9 52 69.2
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 2.1e-15 85.9 52 67.3
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 4.7e-15 84.7 52 67.3
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 8.1e-15 84.0 52 65.4
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 8.1e-15 84.0 74 51.4
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 1.4e-14 83.2 52 65.4
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 1.8e-14 82.8 52 67.3
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 2.4e-14 82.4 54 63.0
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 2.4e-14 82.4 54 63.0
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 2.4e-14 82.4 52 63.5
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 2.4e-14 82.4 52 71.2
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 3.1e-14 82.0 52 67.3
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 3.1e-14 82.0 54 63.0
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 3.1e-14 82.0 51 66.7
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 4.0e-14 81.6 50 72.0
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 4.0e-14 81.6 52 63.5
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 5.2e-14 81.3 52 63.5
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 5.2e-14 81.3 52 63.5
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 5.2e-14 81.3 52 63.5
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 5.2e-14 81.3 52 69.2
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 5.2e-14 81.3 52 69.2
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 6.9e-14 80.9 54 63.0
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 6.9e-14 80.9 50 72.0
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.2e-13 80.1 57 61.4
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.2e-13 80.1 57 61.4
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.2e-13 80.1 57 61.4
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 1.2e-13 80.1 74 48.6
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.5e-13 79.7 57 61.4
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.5e-13 79.7 57 61.4
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 1.5e-13 79.7 80 51.2
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 2.0e-13 79.3 52 63.5
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 2.0e-13 79.3 52 61.5
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.6e-13 79.0 55 67.3
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 2.6e-13 79.0 54 59.3
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 3.4e-13 78.6 52 63.5
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 3.4e-13 78.6 76 46.1
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.4e-13 78.2 50 70.0
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 5.8e-13 77.8 57 61.4
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 5.8e-13 77.8 52 67.3
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 9.9e-13 77.0 52 63.5
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 9.9e-13 77.0 52 61.5
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 9.9e-13 77.0 52 59.6
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.3e-12 76.6 52 59.6
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 1.7e-12 76.3 52 59.6
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 1.7e-12 76.3 52 61.5
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 1.7e-12 76.3 50 66.0
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 2.9e-12 75.5 51 62.7
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 4.9e-12 74.7 46 69.6
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 4.9e-12 74.7 53 58.5
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 8.4e-12 73.9 45 66.7
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.1e-11 73.6 86 44.2
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 1.1e-11 73.6 45 66.7
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 1.9e-11 72.8 45 66.7
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 2.4e-11 72.4 51 60.8
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 2.4e-11 72.4 50 60.0
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 2.4e-11 72.4 51 56.9
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 2.4e-11 72.4 51 56.9
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 3.2e-11 72.0 45 64.4
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 3.2e-11 72.0 52 61.5
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 3.2e-11 72.0 50 62.0
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 4.2e-11 71.6 52 59.6
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 7.1e-11 70.9 51 56.9
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 7.1e-11 70.9 43 69.8
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 7.1e-11 70.9 45 64.4
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 9.3e-11 70.5 51 58.8
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 9.3e-11 70.5 85 42.4
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 9.3e-11 70.5 90 43.3
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 1.2e-10 70.1 51 58.8
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-10 70.1 52 61.5
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 1.2e-10 70.1 52 55.8
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.2e-10 70.1 44 65.9
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 1.6e-10 69.7 51 58.8
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.6e-10 69.7 51 58.8
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 2.1e-10 69.3 78 44.9
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 2.1e-10 69.3 51 58.8
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 2.7e-10 68.9 51 56.9
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 2.7e-10 68.9 51 56.9
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 3.5e-10 68.6 50 58.0
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 3.5e-10 68.6 51 56.9
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 1.3e-09 66.6 51 58.8
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 1.3e-09 66.6 82 42.7
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.7e-09 66.2 75 49.3
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 1.7e-09 66.2 75 42.7
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 3.9e-09 65.1 44 61.4
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 5.1e-09 64.7 50 54.0
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 5.1e-09 64.7 51 54.9
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 5.1e-09 64.7 51 54.9
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 5.1e-09 64.7 51 54.9
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 5.1e-09 64.7 51 54.9
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 5.1e-09 64.7 51 54.9
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 5.1e-09 64.7 52 55.8
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 6.6e-09 64.3 52 57.7
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 8.7e-09 63.9 47 57.4
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 1.5e-08 63.2 44 59.1
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 4.3e-08 61.6 38 68.4
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 5.6e-08 61.2 44 61.4
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 5.6e-08 61.2 44 61.4
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 9.6e-08 60.5 44 54.5
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 2.1e-07 59.3 52 50.0
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 4.8e-07 58.2 46 54.3
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 1.1e-06 57.0 66 43.9
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 1.4e-06 56.6 43 60.5
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 1.4e-06 56.6 43 53.5


User provided reference genes

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