Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0299 Trochodendron aralioides HOM05D002228 ORTHO05D011419 7.1e-75 283.9 147 100.0
TAR376G0176 Trochodendron aralioides HOM05D002228 ORTHO05D002347 1.4e-38 163.3 188 56.4
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 4.4e-24 115.2 132 50.8
Nn5g30462 Nelumbo nucifera HOM05D002228 ORTHO05D002347 4.4e-24 115.2 146 48.6
Manes.07G066300 Manihot esculenta HOM05D002228 ORTHO05D002347 1.5e-19 100.1 140 45.0
QL11p032628 Quercus lobata HOM05D002228 ORTHO05D002347 1.9e-19 99.8 139 43.2
GSVIVG01037894001 Vitis vinifera HOM05D002228 ORTHO05D002347 2.8e-18 95.9 107 49.5
Cfa004608 Carpinus fangiana HOM05D002228 ORTHO05D002347 6.8e-17 91.3 128 44.5
TWI79G1784 Tripterygium wilfordii HOM05D002228 ORTHO05D002347 4.4e-16 88.6 145 39.3
CSS0008847 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 5.7e-16 88.2 116 43.1
CSS0032057 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 5.7e-16 88.2 116 43.1
Potri.009G093000 Populus trichocarpa HOM05D002228 ORTHO05D002347 5.7e-16 88.2 72 62.5
Lj5g0017624 Lotus japonicus HOM05D002228 ORTHO05D002347 9.8e-16 87.4 68 58.8
Hma1.2p1_1023F.1_g248980 Hydrangea macrophylla HOM05D002228 ORTHO05D002347 1.3e-15 87.0 78 61.5
Sabra09G0071600 Salix brachista HOM05D002228 ORTHO05D002347 1.3e-15 87.0 70 60.0
Ca_11056_v3 Cicer arietinum L. HOM05D002228 ORTHO05D002347 1.7e-15 86.7 65 63.1
Haze_10204 Corylus avellana HOM05D002228 ORTHO05D002347 2.2e-15 86.3 129 42.6
Manes.10G075000 Manihot esculenta HOM05D002228 ORTHO05D002347 2.2e-15 86.3 134 38.1
Atru.chr5.2440 Acer truncatum HOM05D002228 ORTHO05D002347 2.8e-15 85.9 142 38.0
Thecc.02G111700 Theobroma cacao HOM05D002228 ORTHO05D002347 8.3e-15 84.3 60 66.7
Dinv15776 Davidia involucrata HOM05D002228 ORTHO05D002347 1.1e-14 84.0 76 60.5
Gohir.D12G021200 Gossypium hirsutum HOM05D002228 ORTHO05D002347 1.1e-14 84.0 74 58.1
Gorai.008G021500 Gossypium raimondii HOM05D002228 ORTHO05D002347 1.1e-14 84.0 74 58.1
Psat6g216280 Pisum sativum HOM05D002228 ORTHO05D002347 1.1e-14 84.0 60 63.3
Ciclev10027725m.g Citrus clementina HOM05D002228 ORTHO05D002347 1.4e-14 83.6 127 41.7
Glyma.10G260400 Glycine max HOM05D002228 ORTHO05D002347 1.8e-14 83.2 61 60.7
Gohir.A12G020900 Gossypium hirsutum HOM05D002228 ORTHO05D002347 1.8e-14 83.2 73 58.9
Oeu013763.2 Olea europaea HOM05D002228 ORTHO05D002347 1.8e-14 83.2 139 37.4
Sabra16G0187200 Salix brachista HOM05D002228 ORTHO05D002347 1.8e-14 83.2 64 60.9
CsaV3_3G018100 Cucumis sativus L. HOM05D002228 ORTHO05D002347 2.4e-14 82.8 146 34.9
MSTRG.20196 Avicennia marina HOM05D002228 ORTHO05D002347 3.1e-14 82.4 128 36.7
MELO3C019554.2 Cucumis melo HOM05D002228 ORTHO05D002347 3.1e-14 82.4 147 36.1
Glyma.20G130800 Glycine max HOM05D002228 ORTHO05D002347 3.1e-14 82.4 61 60.7
Potri.001G298400 Populus trichocarpa HOM05D002228 ORTHO05D002347 3.1e-14 82.4 64 60.9
TPR.G27128 Trifolium pratense HOM05D002228 ORTHO05D002347 3.1e-14 82.4 65 58.5
Actinidia34386 Actinidia chinensis HOM05D002228 ORTHO05D002347 4.1e-14 82.0 74 58.1
Gohir.D04G160900 Gossypium hirsutum HOM05D002228 ORTHO05D002347 4.1e-14 82.0 71 59.2
Gorai.012G148900 Gossypium raimondii HOM05D002228 ORTHO05D002347 4.1e-14 82.0 71 59.2
unitig_21.g20727 Utricularia gibba HOM05D002228 ORTHO05D002347 7.0e-14 81.3 80 52.5
Migut.B00404 Erythranthe guttata HOM05D002228 ORTHO05D002347 9.2e-14 80.9 77 58.4
FAN15G2022 Fragaria x ananassa HOM05D002228 ORTHO05D002347 9.2e-14 80.9 131 38.9
Gohir.A04G119300 Gossypium hirsutum HOM05D002228 ORTHO05D002347 1.6e-13 80.1 65 63.1
ClCG05G010380 Citrullus lanatus HOM05D002228 ORTHO05D002347 2.0e-13 79.7 145 34.5
Lalb_Chr02g0145201 Lupinus albus HOM05D002228 ORTHO05D002347 2.0e-13 79.7 137 39.4
vmacro01985 Vaccinium macrocarpon HOM05D002228 ORTHO05D002347 2.0e-13 79.7 77 55.8
Medtr1g107015 Medicago truncatula HOM05D002228 ORTHO05D002347 2.7e-13 79.3 68 57.4
SGA_v2.0_scaffold32G13031 Striga asiatica HOM05D002228 ORTHO05D002347 2.7e-13 79.3 99 44.4
arahy.Tifrunner.gnm1.ann1.FWIG8T Arachis hypogaea HOM05D002228 ORTHO05D002347 4.5e-13 78.6 104 42.3
FvH4_2g04760 Fragaria vesca HOM05D002228 ORTHO05D002347 4.5e-13 78.6 131 38.2
VMungo0720G0584 Vigna mungo HOM05D002228 ORTHO05D002347 4.5e-13 78.6 59 59.3
Ah.11g050960 Amaranthus hybridus HOM05D000201 ORTHO05D000415 5.9e-13 78.2 125 41.6
Phvul.007G041800 Phaseolus vulgaris HOM05D002228 ORTHO05D002347 5.9e-13 78.2 94 45.7
CANSAT25G1410 Cannabis sativa HOM05D002228 ORTHO05D002347 7.8e-13 77.8 96 43.8
Duzib052G0045 Durio zibethinus HOM05D002228 ORTHO05D002347 7.8e-13 77.8 74 52.7
MBI16_g06971_MAGBIO Magnolia biondii HOM05D002228 ORTHO05D002347 7.8e-13 77.8 124 43.5
PSO541G4090 Papaver somniferum HOM05D002228 ORTHO05D002347 7.8e-13 77.8 113 38.9
Rhsim11G0155600 Rhododendron simsii HOM05D002228 ORTHO05D002347 7.8e-13 77.8 77 50.6
Gohir.A03G185400 Gossypium hirsutum HOM05D002228 ORTHO05D002347 1.0e-12 77.4 60 63.3
FAN24G2621 Fragaria x ananassa HOM05D002228 ORTHO05D002347 1.3e-12 77.0 131 37.4
RhsimUnG0126800 Rhododendron simsii HOM05D002228 ORTHO05D002347 1.3e-12 77.0 74 54.1
FAN20G1217 Fragaria x ananassa HOM05D002228 ORTHO05D002347 2.3e-12 76.3 130 36.9
Gorai.005G234300 Gossypium raimondii HOM05D002228 ORTHO05D002347 2.3e-12 76.3 92 46.7
AUR62008106 Chenopodium quinoa HOM05D002228 ORTHO05D002347 3.8e-12 75.5 48 70.8
Aqoxy6G02831 Aquilegia oxysepala HOM05D002228 ORTHO05D002347 5.0e-12 75.1 142 36.6
DCAR_029097 Daucus carota HOM05D002228 ORTHO05D002347 5.0e-12 75.1 144 36.1
Sed0013880 Sechium edule HOM05D002228 ORTHO05D002347 5.0e-12 75.1 147 36.1
PSO675G2637 Papaver somniferum HOM05D002228 ORTHO05D002347 6.6e-12 74.7 138 34.1
AUR62028683 Chenopodium quinoa HOM05D002228 ORTHO05D002347 8.6e-12 74.3 48 68.8
Prupe.8G137800 Prunus persica HOM05D002228 ORTHO05D002347 8.6e-12 74.3 103 45.6
Sed0012074 Sechium edule HOM05D002228 ORTHO05D002347 8.6e-12 74.3 141 36.2
Cc02_g19450 Coffea canephora HOM05D002228 ORTHO05D002347 1.1e-11 73.9 79 49.4
RcHm_v2.0_Chr6g0254411 Rosa chinensis HOM05D002228 ORTHO05D002347 1.1e-11 73.9 140 35.0
Hund00160 Selenicereus undatus HOM05D002228 ORTHO05D002347 1.1e-11 73.9 63 58.7
FAN27G3118 Fragaria x ananassa HOM05D002228 ORTHO05D002347 1.5e-11 73.6 128 39.1
PGR042G0497 Punica granatum HOM05D002228 ORTHO05D002347 1.5e-11 73.6 143 39.2
MD05G1092200 Malus domestica HOM05D002228 ORTHO05D002347 1.9e-11 73.2 145 37.2
DCAR_001661 Daucus carota HOM05D002228 ORTHO05D002347 2.5e-11 72.8 112 38.4
Gohir.D02G206824 Gossypium hirsutum HOM05D002228 ORTHO05D002347 2.5e-11 72.8 92 45.7
HanXRQChr03g0068781 Helianthus annuus HOM05D002228 ORTHO05D002347 3.3e-11 72.4 50 62.0
MD10G1100500 Malus domestica HOM05D002228 ORTHO05D002347 3.3e-11 72.4 142 38.0
Eucgr.G01324 Eucalyptus grandis HOM05D002228 ORTHO05D002347 4.3e-11 72.0 120 39.2
Peaxi162Scf00016g02512 Petunia axillaris HOM05D002228 ORTHO05D002347 9.5e-11 70.9 136 36.0
Actinidia00399 Actinidia chinensis HOM05D002228 ORTHO05D011419 1.2e-10 70.5 61 59.0
Lsat_1_v5_gn_9_111961 Lactuca sativa HOM05D002228 ORTHO05D002347 1.6e-10 70.1 74 51.4
ECA240G0303 Erigeron canadensis HOM05D002228 ORTHO05D002347 3.6e-10 68.9 50 62.0
Lj5C215T26 Lonicera japonica HOM05D002228 ORTHO05D002347 3.6e-10 68.9 67 52.2
ATR0661G143 Amborella trichopoda HOM05D002228 ORTHO05D002347 4.7e-10 68.6 66 50.0
Sc18g0005540 Simmondsia chinensis HOM05D002228 ORTHO05D002347 4.7e-10 68.6 66 48.5
Nitab4.5_0001480g0090 Nicotiana tabacum HOM05D002228 ORTHO05D002347 8.0e-10 67.8 116 40.5
CDE02G2825 Ceratophyllum demersum HOM05D002228 ORTHO05D002347 1.0e-09 67.4 102 40.2
HPP92_018450 Vanilla planifolia HOM05D002228 ORTHO05D002347 1.4e-09 67.0 75 49.3
CAN.G606.22 Capsicum annuum HOM05D002228 ORTHO05D002347 5.2e-09 65.1 104 41.3
Os06g0229300 Oryza sativa ssp. japonica HOM05D002228 ORTHO05D002347 5.2e-09 65.1 79 45.6
Sopen01g049650 Solanum pennellii HOM05D002228 ORTHO05D002347 5.2e-09 65.1 76 46.1
Duzib132G1185 Durio zibethinus HOM05D002228 ORTHO05D002347 6.8e-09 64.7 64 53.1
Nitab4.5_0003699g0040 Nicotiana tabacum HOM05D002228 ORTHO05D002347 6.8e-09 64.7 117 35.0
Solyc01g107410.3 Solanum lycopersicum HOM05D002228 ORTHO05D002347 6.8e-09 64.7 76 46.1
HanXRQChr09g0251051 Helianthus annuus HOM05D002228 ORTHO05D002347 2.0e-08 63.2 140 35.0
A01p35200 Brassica napus HOM05D002228 ORTHO05D002347 3.4e-08 62.4 108 38.0
Zm00001eb153100 Zea mays HOM05D002228 ORTHO05D002347 3.4e-08 62.4 60 51.7
Zm00001eb371020 Zea mays HOM05D002228 ORTHO05D002347 3.4e-08 62.4 60 48.3
PGSC0003DMG400025760 Solanum tuberosum HOM05D002228 ORTHO05D002347 5.8e-08 61.6 73 46.6
BraA01t03601Z Brassica rapa HOM05D002228 ORTHO05D002347 7.5e-08 61.2 58 53.4
COL.COLO4_32568 Corchorus olitorius HOM05D002228 ORTHO05D002347 1.3e-07 60.5 62 46.8
AT3G19510 Arabidopsis thaliana HOM05D002228 ORTHO05D002347 1.7e-07 60.1 68 44.1
Sed0028125 Sechium edule HOM05D002228 ORTHO05D002347 1.7e-07 60.1 93 39.8
CDE06G1434 Ceratophyllum demersum HOM05D002228 ORTHO05D011419 2.9e-07 59.3 89 42.7
Sp3g17570 Schrenkiella parvula HOM05D002228 ORTHO05D002347 6.4e-07 58.2 47 55.3
Thhalv10022305m.g Eutrema salsugineum HOM05D002228 ORTHO05D002347 8.3e-07 57.8 56 51.8
Zm00001eb353320 Zea mays HOM05D002228 ORTHO05D002347 8.3e-07 57.8 113 33.6
A05p30110 Brassica napus HOM05D002228 ORTHO05D002347 1.4e-06 57.0 61 47.5
BraA05t21851Z Brassica rapa HOM05D002228 ORTHO05D002347 1.4e-06 57.0 61 47.5
Carub.0003s1932 Capsella rubella HOM05D002228 ORTHO05D002347 1.4e-06 57.0 68 44.1
BcaC05g28469 Brassica carinata HOM05D002228 ORTHO05D002347 1.9e-06 56.6 61 47.5
C05p45530 Brassica napus HOM05D002228 ORTHO05D002347 1.9e-06 56.6 61 47.5
BolC5t33278H Brassica oleracea HOM05D002228 ORTHO05D002347 1.9e-06 56.6 61 47.5
Sed0011029 Sechium edule HOM05D002228 ORTHO05D002347 1.9e-06 56.6 62 43.5
BcaC09g48910 Brassica carinata HOM05D002228 ORTHO05D002347 3.2e-06 55.8 92 40.2
BolC1t04430H Brassica oleracea HOM05D002228 ORTHO05D002347 3.2e-06 55.8 92 40.2
BcaB06g26011 Brassica carinata HOM05D002228 ORTHO05D002347 4.1e-06 55.5 59 45.8
Zm00001eb235090 Zea mays HOM05D009386 ORTHO05D011419 5.4e-06 55.1 104 33.7
Aa31LG8G6270 Aethionema arabicum HOM05D002228 ORTHO05D002347 9.2e-06 54.3 93 38.7
C01p44620 Brassica napus HOM05D002228 ORTHO05D002347 9.2e-06 54.3 92 39.1
Zm00001eb170840 Zea mays HOM05D009386 ORTHO05D011419 9.2e-06 54.3 104 35.6


User provided reference genes

Program Settings