Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.2e-123 445.7 231 100.0
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 2.3e-83 312.8 187 82.9
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 2.5e-82 309.3 187 82.4
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 8.0e-81 304.3 187 80.2
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 1.5e-79 300.1 187 79.1
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 2.8e-78 295.8 187 78.1
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 7.0e-77 291.2 187 77.5
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 1.6e-76 290.0 188 80.3
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 1.3e-75 287.0 185 76.8
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.2e-73 280.4 187 73.8
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.6e-73 280.0 187 74.3
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 2.8e-73 279.3 188 73.9
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 3.6e-73 278.9 187 73.8
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 3.0e-72 275.8 187 73.3
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 5.2e-72 275.0 187 72.7
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 8.9e-72 274.2 187 76.5
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 2.0e-71 273.1 187 72.7
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 3.4e-71 272.3 185 72.4
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 7.5e-71 271.2 187 72.7
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 2.2e-70 269.6 187 72.2
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 2.2e-70 269.6 158 84.8
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 2.2e-70 269.6 181 72.9
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 2.9e-70 269.2 195 73.3
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 3.7e-70 268.9 185 70.3
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 3.7e-70 268.9 187 71.7
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 3.7e-70 268.9 185 71.4
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 3.7e-70 268.9 187 69.5
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 6.4e-70 268.1 185 70.8
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 6.4e-70 268.1 187 71.7
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 1.4e-69 266.9 178 75.8
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 4.1e-69 265.4 178 75.8
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 9.2e-69 264.2 187 68.4
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 6.0e-68 261.5 187 67.9
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 1.3e-67 260.4 187 69.0
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 1.7e-67 260.0 187 71.1
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 3.0e-67 259.2 188 68.1
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 6.6e-67 258.1 187 68.4
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 1.1e-66 257.3 187 66.3
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 7.3e-66 254.6 184 69.0
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 1.2e-65 253.8 195 66.7
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 2.8e-65 252.7 158 79.1
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 4.7e-65 251.9 175 72.6
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 4.7e-65 251.9 185 69.7
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 6.2e-65 251.5 187 65.2
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 6.2e-65 251.5 184 67.9
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.4e-64 250.4 191 67.5
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 5.2e-64 248.4 184 67.4
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 6.8e-64 248.1 177 71.2
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 8.9e-64 247.7 187 67.4
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 1.5e-63 246.9 186 68.8
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 1.5e-63 246.9 187 64.7
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 1.5e-63 246.9 179 67.6
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 3.4e-63 245.7 210 62.9
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 4.4e-63 245.4 187 67.4
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.8e-63 245.0 184 67.4
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 1.7e-62 243.4 195 63.1
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 6.4e-62 241.5 184 67.4
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 8.3e-62 241.1 184 63.0
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.1e-61 240.7 187 64.2
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 2.4e-61 239.6 178 67.4
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 1.2e-60 237.3 181 66.9
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 2.1e-60 236.5 169 72.8
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 3.5e-60 235.7 187 62.6
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 3.5e-60 235.7 182 66.5
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 1.0e-59 234.2 169 71.6
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 1.3e-59 233.8 187 62.6
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 6.6e-59 231.5 184 62.5
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 2.5e-58 229.6 187 60.4
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 3.3e-58 229.2 187 64.7
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 3.3e-58 229.2 187 59.9
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 4.3e-58 228.8 179 65.9
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 4.3e-58 228.8 168 66.1
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 5.6e-58 228.4 185 62.2
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 5.6e-58 228.4 185 63.2
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 7.3e-58 228.0 185 62.2
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 9.5e-58 227.6 164 67.7
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 4.7e-57 225.3 187 60.4
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 4.7e-57 225.3 193 60.1
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 1.1e-56 224.2 187 58.3
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 1.4e-56 223.8 163 66.9
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 4.0e-56 222.2 164 65.9
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 4.0e-56 222.2 184 62.0
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 6.8e-56 221.5 176 63.1
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 8.9e-56 221.1 184 64.1
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 2.6e-55 219.5 187 58.3
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 3.7e-54 215.7 161 65.8
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 8.3e-54 214.5 185 63.8
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 1.1e-53 214.2 161 65.2
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 1.1e-53 214.2 161 65.2
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 1.1e-53 214.2 161 65.2
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 1.4e-53 213.8 161 65.2
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 2.4e-53 213.0 161 64.6
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 3.2e-53 212.6 163 65.0
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 4.1e-53 212.2 164 64.0
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 5.4e-53 211.8 187 57.8
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 3.5e-52 209.1 185 59.5
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 4.6e-52 208.8 187 58.3
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 7.8e-52 208.0 164 63.4
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 5.6e-50 201.8 152 64.5
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 7.3e-50 201.4 170 61.8
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 9.5e-50 201.1 152 64.5
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 2.2e-46 189.9 185 53.0
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 2.9e-46 189.5 187 54.0
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 9.2e-45 184.5 179 55.3
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 1.0e-43 181.0 182 54.4
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 3.9e-43 179.1 187 50.8
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 1.9e-42 176.8 135 64.4
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 7.3e-42 174.9 187 50.8
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 5.3e-40 168.7 187 53.5
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 2.0e-39 166.8 163 55.8
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 7.8e-36 154.8 105 69.5
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 1.3e-35 154.1 119 63.9
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 7.3e-34 148.3 159 47.2
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 9.6e-34 147.9 157 46.5
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 9.6e-34 147.9 121 62.0
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 1.3e-33 147.5 139 58.3
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 1.1e-32 144.4 173 42.2
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 1.2e-31 141.0 144 43.8
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 3.8e-30 136.0 99 65.7
SMO031G0001 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 6.4e-30 135.2 122 53.3
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 1.1e-26 124.4 195 41.5
TAR629G2180 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.5e-26 123.2 65 90.8
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 7.4e-26 121.7 155 45.8
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.8e-24 117.1 158 46.2
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.3e-24 115.5 163 44.2
SalBow3G3831 Salvia bowleyana HOM05D003810 ORTHO05D004416 1.2e-23 114.4 136 49.3
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 3.4e-23 112.8 164 43.3
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.8e-22 109.4 170 42.9
ClCG09G022970 Citrullus lanatus HOM05D003810 ORTHO05D004416 1.9e-18 97.1 70 68.6
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.9e-18 97.1 158 40.5
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 2.8e-17 93.2 115 47.0
SHI21696 Sapria himalayana HOM05D003810 ORTHO05D004416 4.8e-17 92.4 108 48.1
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 5.3e-16 89.0 68 63.2
SalBow3G0229 Salvia bowleyana HOM05D003810 ORTHO05D004416 7.6e-15 85.1 74 59.5
TPR.G30768 Trifolium pratense HOM05D003810 ORTHO05D004416 2.3e-11 73.6 66 59.1
Hund17711 Selenicereus undatus HOM05D003810 ORTHO05D004416 6.7e-11 72.0 52 65.4
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.5e-10 70.9 105 43.8
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 5.7e-10 68.9 45 73.3
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 1.3e-09 67.8 68 50.0
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 2.0e-07 60.5 100 32.0
A07p35570 Brassica napus HOM05D003810 ORTHO05D004416 2.6e-07 60.1 50 60.0
BraA07t31145Z Brassica rapa HOM05D003810 ORTHO05D004416 2.6e-07 60.1 50 60.0
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 2.6e-07 60.1 49 57.1
MD08G1246500 Malus domestica HOM05D003810 ORTHO05D004416 5.9e-07 58.9 44 68.2
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 5.0e-06 55.8 32 84.4


User provided reference genes

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