Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 3.1e-195 684.9 328 100.0
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 9.0e-179 630.2 317 94.0
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 2.8e-172 608.6 317 89.6
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 1.1e-171 606.7 317 89.6
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 2.6e-170 602.1 324 88.0
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 5.9e-170 600.9 320 88.8
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 1.0e-169 600.1 315 89.5
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 1.9e-168 595.9 320 87.5
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 5.5e-168 594.3 318 88.7
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 1.6e-167 592.8 318 88.4
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 1.6e-167 592.8 318 88.1
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 2.1e-167 592.4 319 88.1
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 2.7e-167 592.0 317 87.4
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 2.7e-167 592.0 319 87.8
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 3.6e-167 591.7 320 88.1
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.0e-166 590.1 321 88.5
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 1.0e-166 590.1 319 87.1
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 1.0e-166 590.1 323 86.4
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 1.4e-166 589.7 321 86.9
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 1.8e-166 589.3 316 88.9
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 2.3e-166 589.0 318 87.4
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 3.0e-166 588.6 317 86.8
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 3.9e-166 588.2 322 86.0
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 8.8e-166 587.0 317 86.8
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 1.1e-165 586.6 315 87.9
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 2.0e-165 585.9 317 86.4
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 2.6e-165 585.5 317 86.8
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 2.6e-165 585.5 316 87.7
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 5.7e-165 584.3 319 87.1
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 7.4e-165 583.9 317 86.1
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 7.4e-165 583.9 315 87.3
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 7.4e-165 583.9 316 87.7
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 1.3e-164 583.2 317 86.4
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 1.3e-164 583.2 317 86.1
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 2.2e-164 582.4 315 87.3
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.2e-164 582.4 315 87.3
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.2e-164 582.4 315 87.3
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 2.2e-164 582.4 317 86.1
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 3.7e-164 581.6 316 87.7
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 4.8e-164 581.3 319 85.9
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 6.3e-164 580.9 318 86.5
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 6.3e-164 580.9 315 87.0
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 6.3e-164 580.9 318 87.1
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 8.2e-164 580.5 315 86.7
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 8.2e-164 580.5 317 86.8
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.1e-163 580.1 317 85.8
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.4e-163 579.7 317 85.8
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 1.4e-163 579.7 317 86.8
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 1.4e-163 579.7 317 86.1
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 1.8e-163 579.3 321 86.0
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 1.8e-163 579.3 320 86.2
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 2.4e-163 578.9 317 85.8
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 2.4e-163 578.9 317 85.5
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 3.1e-163 578.6 317 85.5
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 3.1e-163 578.6 317 86.4
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 3.1e-163 578.6 316 87.3
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 4.1e-163 578.2 319 86.2
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 5.3e-163 577.8 317 85.2
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 7.0e-163 577.4 315 87.6
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 7.0e-163 577.4 318 86.5
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 7.0e-163 577.4 317 85.8
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 7.0e-163 577.4 317 84.9
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 7.0e-163 577.4 317 84.9
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 9.1e-163 577.0 317 86.1
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 2.6e-162 575.5 320 85.6
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 2.6e-162 575.5 320 85.3
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 3.5e-162 575.1 344 81.1
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 3.5e-162 575.1 317 86.1
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 3.5e-162 575.1 320 85.0
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 4.5e-162 574.7 320 85.9
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 1.0e-161 573.5 319 86.5
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 1.3e-161 573.2 317 84.9
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 1.3e-161 573.2 322 84.2
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 1.3e-161 573.2 350 82.0
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 1.3e-161 573.2 322 84.5
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 2.2e-161 572.4 315 85.4
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 2.2e-161 572.4 317 85.8
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 2.2e-161 572.4 316 85.8
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 2.9e-161 572.0 323 84.2
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 5.0e-161 571.2 321 86.3
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 3.2e-160 568.5 318 84.9
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 4.2e-160 568.2 318 84.6
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 5.5e-160 567.8 322 83.5
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 1.2e-159 566.6 319 84.0
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 1.2e-159 566.6 322 82.9
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 1.2e-159 566.6 345 80.6
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 1.6e-159 566.2 318 84.3
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 1.6e-159 566.2 318 84.3
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 1.6e-159 566.2 318 84.3
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 2.1e-159 565.8 318 84.3
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 2.1e-159 565.8 317 84.9
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 2.7e-159 565.5 318 84.3
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 8.0e-159 563.9 318 84.0
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 1.0e-158 563.5 319 83.7
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 1.0e-158 563.5 346 79.2
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 5.2e-158 561.2 325 82.5
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.4e-157 558.1 317 83.0
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 1.3e-156 556.6 317 82.3
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.7e-156 556.2 317 82.6
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 8.2e-156 553.9 377 73.5
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 1.4e-155 553.1 316 82.0
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 1.8e-155 552.7 317 82.0
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 9.1e-155 550.4 285 90.2
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 5.9e-154 547.7 318 80.8
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 5.9e-154 547.7 325 82.8
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 2.9e-153 545.4 326 81.0
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 3.8e-153 545.0 322 82.0
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 6.8e-150 534.3 286 86.4
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.8e-149 530.4 317 78.9
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.1e-147 526.9 278 87.1
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 1.9e-144 516.2 474 57.8
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 3.6e-143 511.9 318 78.9
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 3.0e-142 508.8 321 74.5
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 5.2e-142 508.1 327 73.7
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 3.4e-141 505.4 320 76.9
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 3.4e-141 505.4 472 57.6
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 6.3e-140 501.1 318 73.3
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 6.3e-140 501.1 317 76.3
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 1.4e-139 500.0 286 83.9
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.0e-137 493.8 315 73.7
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 2.1e-135 486.1 284 78.5
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 2.8e-127 459.1 277 77.3
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 3.2e-123 445.7 317 68.1
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 6.2e-119 431.4 220 88.2
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 7.5e-117 424.5 287 68.3
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 2.2e-116 422.9 320 69.7
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.1e-115 420.6 320 62.8
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 8.9e-110 401.0 242 78.5
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 1.2e-109 400.6 250 78.4
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 2.8e-103 379.4 219 81.7
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 2.7e-98 362.8 318 57.5
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 7.3e-96 354.8 316 56.0
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.7e-92 343.6 189 83.6
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.4e-91 339.7 214 75.7
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.0e-86 322.4 204 73.5
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 6.0e-82 308.5 184 80.4
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 1.3e-81 307.4 268 55.6
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 2.2e-63 246.9 319 41.4
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 3.1e-62 243.0 305 43.9
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.2e-61 241.1 300 42.7
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.4e-59 234.2 295 42.7
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 4.2e-59 232.6 323 38.7
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 9.7e-56 221.5 298 42.3
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.1e-54 218.0 177 64.4
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.4e-54 217.6 302 40.7
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 1.0e-52 211.5 104 94.2
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 4.1e-46 189.5 114 82.5
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 8.5e-44 181.8 224 42.0
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 1.9e-43 180.6 153 61.4
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 2.9e-28 130.2 92 71.7
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 4.0e-25 119.8 64 81.2
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 2.2e-23 114.0 157 44.6
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 1.2e-18 98.2 62 80.6
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 3.0e-17 93.6 67 70.1
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 2.0e-16 90.9 49 83.7
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 2.0e-16 90.9 93 55.9
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 2.9e-15 87.0 115 45.2
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 1.9e-11 74.3 32 87.5
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 5.2e-09 66.2 33 75.8
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 3.4e-08 63.5 31 83.9
HanXRQChr08g0215991 Helianthus annuus HOM05D033391 ORTHO05D220840 3.2e-06 57.0 27 85.2
HanXRQChr11g0343191 Helianthus annuus HOM05D033391 ORTHO05D220967 7.0e-06 55.8 25 92.0


User provided reference genes

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