Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 1.4e-99 366.3 187 100.0
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 4.2e-80 301.6 187 81.8
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 4.2e-80 301.6 189 85.2
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 1.6e-79 299.7 188 83.0
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 6.1e-79 297.7 190 82.6
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 3.0e-78 295.4 188 81.4
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 5.1e-78 294.7 187 79.7
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 8.8e-78 293.9 189 82.0
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 8.8e-78 293.9 188 80.3
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 8.8e-78 293.9 188 80.3
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.1e-77 293.5 188 80.3
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 2.5e-77 292.4 187 78.6
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 3.3e-77 292.0 189 82.5
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 5.7e-77 291.2 192 80.7
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 5.7e-77 291.2 192 80.7
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 7.4e-77 290.8 188 80.9
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.3e-76 290.0 189 78.3
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 1.3e-76 290.0 188 79.8
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.3e-76 290.0 188 79.8
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.3e-76 290.0 188 79.8
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 2.2e-76 289.3 192 78.6
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 3.7e-76 288.5 187 79.1
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 6.3e-76 287.7 188 78.7
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 8.2e-76 287.3 188 78.7
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 8.2e-76 287.3 186 80.1
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 3.1e-75 285.4 188 78.2
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 3.1e-75 285.4 186 79.6
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 4.1e-75 285.0 188 78.2
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 5.3e-75 284.6 190 79.5
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 6.9e-75 284.3 192 79.7
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 2.0e-74 282.7 186 76.9
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 2.0e-74 282.7 189 81.0
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 2.6e-74 282.3 184 79.9
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 2.6e-74 282.3 188 78.2
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 3.4e-74 282.0 172 84.9
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 3.4e-74 282.0 188 78.7
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 4.5e-74 281.6 187 78.1
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 5.9e-74 281.2 189 79.4
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 7.7e-74 280.8 189 79.9
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.0e-73 280.4 186 80.1
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.7e-73 279.6 186 80.1
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 1.7e-73 279.6 192 77.6
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 8.5e-73 277.3 190 75.8
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 8.5e-73 277.3 186 78.5
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 1.1e-72 276.9 189 76.7
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 1.4e-72 276.6 184 78.8
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 1.4e-72 276.6 190 75.8
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 1.4e-72 276.6 188 78.2
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 1.9e-72 276.2 186 76.3
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 2.5e-72 275.8 187 77.0
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 3.2e-72 275.4 189 77.8
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 4.2e-72 275.0 188 78.7
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 4.2e-72 275.0 186 76.3
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 4.2e-72 275.0 189 78.3
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 5.5e-72 274.6 189 77.2
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 7.2e-72 274.2 177 78.5
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 9.4e-72 273.9 189 76.7
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.2e-71 273.5 193 77.2
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 1.2e-71 273.5 188 77.1
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.2e-71 273.5 189 77.2
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 1.6e-71 273.1 181 81.2
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 1.6e-71 273.1 185 77.3
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 2.7e-71 272.3 179 79.3
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 2.7e-71 272.3 187 74.9
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 2.7e-71 272.3 204 72.5
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 3.6e-71 271.9 190 75.8
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 4.7e-71 271.6 187 76.5
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 7.9e-71 270.8 186 76.3
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 1.4e-70 270.0 215 67.9
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 1.8e-70 269.6 186 75.8
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 5.1e-70 268.1 226 66.8
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 6.7e-70 267.7 169 80.5
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 1.3e-68 263.5 188 73.9
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 3.7e-68 261.9 186 72.0
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 1.4e-67 260.0 188 72.3
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 1.8e-67 259.6 186 74.2
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 1.8e-67 259.6 188 71.8
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.5e-66 256.5 180 79.4
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 1.7e-65 253.1 190 73.2
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 2.9e-65 252.3 190 73.2
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 3.8e-65 251.9 180 75.6
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 5.0e-65 251.5 161 81.4
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 6.5e-65 251.1 189 69.3
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 8.5e-65 250.8 188 73.4
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 1.5e-64 250.0 190 73.2
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 2.5e-64 249.2 189 75.1
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 3.2e-64 248.8 183 74.3
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 7.2e-64 247.7 186 73.1
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 9.4e-64 247.3 190 72.1
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 1.2e-63 246.9 190 72.1
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 1.6e-63 246.5 192 73.4
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 1.6e-63 246.5 192 73.4
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 1.6e-63 246.5 191 72.8
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 2.7e-63 245.7 190 72.1
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 2.7e-63 245.7 178 74.7
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 3.6e-63 245.4 189 67.7
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 4.7e-63 245.0 191 72.3
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 4.7e-63 245.0 191 72.3
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 4.7e-63 245.0 191 72.3
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 4.7e-63 245.0 193 68.4
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 1.0e-62 243.8 202 67.8
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 5.2e-62 241.5 192 71.4
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 9.7e-61 237.3 188 69.1
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 1.7e-60 236.5 184 70.1
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 1.7e-60 236.5 182 72.0
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 2.2e-60 236.1 192 68.8
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 8.2e-60 234.2 187 71.1
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.4e-59 233.4 157 76.4
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 1.8e-59 233.0 167 76.0
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 3.1e-59 232.3 205 63.9
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 7.0e-59 231.1 155 78.7
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 7.0e-59 231.1 188 67.0
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 1.6e-58 229.9 217 59.0
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 3.5e-58 228.8 143 82.5
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 1.0e-57 227.3 143 81.8
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 1.0e-57 227.3 143 81.8
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 1.7e-57 226.5 187 69.5
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 3.8e-57 225.3 159 76.7
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 1.5e-56 223.4 127 89.8
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 4.2e-56 221.9 170 74.1
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 4.2e-56 221.9 127 89.0
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 9.4e-56 220.7 188 65.4
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 6.1e-55 218.0 125 88.8
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 8.0e-55 217.6 190 68.4
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 8.0e-55 217.6 125 88.0
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 2.6e-53 212.6 124 86.3
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 1.3e-52 210.3 155 70.3
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 1.7e-52 209.9 155 70.3
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 4.8e-52 208.4 157 72.0
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 1.1e-51 207.2 197 61.4
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 5.4e-51 204.9 176 61.4
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 3.5e-50 202.2 139 74.8
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 4.5e-50 201.8 176 60.8
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 7.7e-50 201.1 199 61.8
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 7.7e-50 201.1 197 62.9
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 7.7e-50 201.1 174 61.5
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 1.7e-49 199.9 173 66.5
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 2.2e-49 199.5 146 76.0
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 3.8e-49 198.7 124 79.0
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 5.5e-48 194.9 152 71.1
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 1.6e-47 193.4 152 69.7
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 2.1e-47 193.0 152 69.7
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 1.5e-45 186.8 200 59.0
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.9e-40 169.9 193 53.9
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 4.3e-40 168.7 169 57.4
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.2e-39 167.2 162 59.3
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 2.8e-39 166.0 190 54.2
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 3.0e-38 162.5 125 64.8
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 5.2e-38 161.8 138 63.0
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 2.6e-37 159.5 124 63.7
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 1.7e-36 156.8 193 51.8
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.8e-35 153.3 111 70.3
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 2.7e-34 149.4 159 54.7
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 2.7e-34 149.4 125 60.0
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 7.8e-34 147.9 126 62.7
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 1.1e-32 144.1 96 78.1
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 5.6e-32 141.7 177 49.7
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 5.6e-32 141.7 124 64.5
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 1.0e-30 137.5 153 58.2
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 1.8e-30 136.7 77 88.3
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 6.8e-30 134.8 175 45.7
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 9.2e-27 124.4 69 91.3
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.5e-24 117.1 68 88.2
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 5.6e-24 115.2 68 86.8
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 1.0e-17 94.4 127 52.0
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 1.3e-17 94.0 69 68.1
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 1.7e-17 93.6 127 52.0
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 6.6e-17 91.7 56 78.6
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 6.6e-17 91.7 53 83.0
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.1e-16 90.9 53 81.1
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 1.5e-16 90.5 53 81.1
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 1.9e-16 90.1 124 40.3
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 2.5e-16 89.7 47 91.5
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 4.7e-15 85.5 121 48.8
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 4.0e-14 82.4 79 51.9
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 4.3e-08 62.4 46 67.4
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 5.6e-08 62.0 37 81.1
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 7.3e-08 61.6 46 67.4
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 2.8e-07 59.7 31 93.5
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 4.7e-07 58.9 46 65.2


User provided reference genes

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