Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 0.0e+00 1183.7 575 100.0
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 1.1e-277 959.5 536 85.6
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 9.7e-277 956.4 536 85.1
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 8.2e-276 953.4 536 85.8
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 8.2e-276 953.4 551 84.2
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 1.4e-275 952.6 536 85.1
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 1.4e-275 952.6 558 82.4
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 3.1e-275 951.4 536 85.6
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 6.9e-275 950.3 536 85.3
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 1.5e-274 949.1 536 85.3
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 2.6e-274 948.3 558 82.1
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 3.4e-274 948.0 558 82.1
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 1.0e-273 946.4 536 84.1
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 1.3e-273 946.0 553 82.5
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 1.7e-273 945.7 551 83.7
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 3.8e-273 944.5 536 85.6
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 1.2e-271 939.5 531 84.0
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 8.8e-270 933.3 536 83.4
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 1.5e-269 932.6 534 83.3
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 3.1e-267 924.9 536 83.0
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 6.9e-267 923.7 538 81.8
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 1.2e-266 922.9 536 82.8
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 3.4e-266 921.4 536 83.2
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 2.2e-265 918.7 521 84.1
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 8.5e-265 916.8 526 83.5
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 1.1e-264 916.4 536 80.6
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 1.1e-264 916.4 541 81.9
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 4.2e-264 914.4 536 81.3
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 1.2e-263 912.9 536 82.5
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 3.6e-263 911.4 511 85.5
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 3.6e-263 911.4 529 82.6
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 4.7e-263 911.0 543 79.6
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 6.1e-263 910.6 536 80.4
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 7.9e-263 910.2 536 82.6
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 6.7e-262 907.1 522 83.1
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 1.1e-261 906.4 537 83.6
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 5.7e-261 904.0 535 81.9
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 7.4e-261 903.7 536 81.5
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 2.2e-260 902.1 548 79.6
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 6.3e-260 900.6 555 78.6
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 5.3e-259 897.5 549 79.1
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 9.1e-259 896.7 535 80.4
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 9.1e-259 896.7 536 80.6
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 2.6e-258 895.2 558 78.1
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 2.6e-258 895.2 536 79.9
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 3.5e-258 894.8 536 79.9
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 1.0e-257 893.3 547 78.2
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 2.2e-257 892.1 528 80.1
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 2.2e-257 892.1 537 79.9
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 2.9e-257 891.7 536 79.5
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 2.9e-257 891.7 558 78.1
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 5.0e-257 891.0 531 80.0
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 5.0e-257 891.0 541 78.9
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 5.5e-256 887.5 574 74.7
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 5.5e-256 887.5 531 80.0
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 7.2e-256 887.1 539 78.1
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 2.7e-255 885.2 536 78.9
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 6.1e-255 884.0 590 73.1
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 1.4e-254 882.9 529 80.7
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 1.4e-254 882.9 536 78.2
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 1.7e-252 875.9 536 78.2
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 2.2e-252 875.5 543 76.2
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 2.8e-252 875.2 541 77.4
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 3.7e-252 874.8 536 77.6
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 3.1e-251 871.7 538 76.2
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 4.1e-251 871.3 542 78.0
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 7.0e-251 870.5 545 77.1
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 7.0e-251 870.5 536 75.7
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 1.6e-250 869.4 536 77.2
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 3.5e-250 868.2 512 82.0
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 8.5e-249 863.6 550 75.3
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.9e-248 862.4 536 77.8
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 3.6e-247 858.2 564 75.5
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 1.0e-246 856.7 504 81.3
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 2.3e-246 855.5 562 75.6
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 1.2e-245 853.2 541 74.5
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 1.5e-245 852.8 531 75.0
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 2.0e-245 852.4 536 74.6
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 3.4e-245 851.7 520 79.8
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 4.4e-245 851.3 536 78.2
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.7e-244 849.4 522 80.1
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 2.8e-244 848.6 538 74.3
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 3.7e-244 848.2 536 74.1
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 4.8e-244 847.8 536 75.0
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 8.3e-244 847.0 531 74.8
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 2.4e-243 845.5 536 75.9
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 1.2e-242 843.2 541 74.5
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 2.0e-242 842.4 531 75.3
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 2.0e-242 842.4 538 74.2
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 1.0e-241 840.1 535 74.6
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 3.8e-241 838.2 529 77.5
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 6.5e-241 837.4 544 75.4
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 6.5e-241 837.4 532 74.2
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 1.9e-240 835.9 535 72.1
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 3.2e-240 835.1 522 76.8
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 2.1e-239 832.4 536 73.7
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 1.0e-238 830.1 536 74.8
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 2.3e-238 828.9 539 74.2
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 4.4e-237 824.7 548 73.9
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 6.3e-236 820.8 536 73.3
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 1.4e-235 819.7 536 73.1
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 2.4e-235 818.9 536 73.1
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 2.4e-235 818.9 536 73.1
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 2.4e-235 818.9 541 72.6
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 5.4e-235 817.8 534 72.3
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 7.0e-235 817.4 531 73.3
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 7.0e-235 817.4 536 73.1
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 4.5e-234 814.7 534 72.7
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 4.5e-234 814.7 534 72.8
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 4.5e-234 814.7 534 72.7
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 1.0e-233 813.5 534 72.8
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.8e-230 802.7 547 73.3
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 2.3e-230 802.4 504 76.6
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 2.7e-226 788.9 550 71.6
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 4.5e-226 788.1 505 73.7
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 2.9e-225 785.4 482 78.0
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 6.6e-225 784.3 517 75.2
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 9.5e-224 780.4 534 72.3
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 1.6e-223 779.6 531 70.6
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 1.9e-219 766.1 550 68.5
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 1.4e-211 740.0 558 65.6
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 3.5e-210 735.3 535 68.4
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 1.8e-206 723.0 538 66.0
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.7e-204 716.5 479 73.9
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 1.7e-188 663.3 576 60.4
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 3.2e-187 659.1 556 61.5
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 6.0e-186 654.8 558 60.8
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 1.1e-184 650.6 564 59.8
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 1.4e-182 643.7 403 78.9
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 4.5e-149 532.3 322 83.2
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 3.8e-148 529.3 327 78.9
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.9e-132 476.5 343 69.4
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 3.8e-132 476.1 267 89.9
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 7.5e-128 461.8 265 82.3
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 4.2e-123 446.0 318 72.0
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 1.1e-115 421.4 548 46.4
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.0e-104 384.0 281 68.7
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.9e-99 367.5 218 82.1
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 3.7e-95 353.2 204 74.5
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 9.2e-94 348.6 293 63.8
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 4.6e-93 346.3 291 59.5
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.4e-81 307.4 227 70.5
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 2.3e-76 290.8 199 72.4
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 3.3e-75 287.0 200 72.5
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 2.1e-74 284.3 564 32.8
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.3e-63 248.4 146 74.7
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 1.1e-54 218.8 277 39.7
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 7.6e-48 196.1 139 66.9
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 2.9e-47 194.1 217 46.5
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.8e-34 151.0 99 66.7
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 6.3e-34 149.8 123 56.9
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 1.9e-30 138.3 119 60.5
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.1e-27 129.0 106 62.3
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 1.6e-24 118.6 100 60.0
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 2.6e-24 117.9 54 90.7
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 1.3e-23 115.5 154 43.5
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 6.1e-21 106.7 124 49.2
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 5.7e-19 100.1 55 87.3
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 3.0e-12 77.8 52 61.5
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 1.2e-08 65.9 43 74.4


User provided reference genes

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