Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0135 Trochodendron aralioides HOM05D004707 ORTHO05D005837 2.9e-52 208.4 113 100.0
TAR375G0400 Trochodendron aralioides HOM05D004707 ORTHO05D005837 1.1e-22 110.2 69 87.0
GSVIVG01026989001 Vitis vinifera HOM05D004707 ORTHO05D005837 1.7e-20 102.8 69 79.7
Ciclev10028150m.g Citrus clementina HOM05D004707 ORTHO05D005837 2.3e-20 102.4 69 78.3
Cpa.g.sc11.45 Carica papaya HOM05D004707 ORTHO05D005837 5.0e-20 101.3 69 78.3
BcaC03g16035 Brassica carinata HOM05D004707 ORTHO05D005837 6.6e-20 100.9 60 81.7
A02p24040 Brassica napus HOM05D000315 ORTHO05D000527 6.6e-20 100.9 60 81.7
C02p37880 Brassica napus HOM05D000315 ORTHO05D000527 6.6e-20 100.9 60 81.7
BolC2t09805H Brassica oleracea HOM05D004707 ORTHO05D005837 6.6e-20 100.9 60 81.7
BraA02t07399Z Brassica rapa HOM05D000315 ORTHO05D000527 6.6e-20 100.9 60 81.7
CSS0041396 Camellia sinensis var. sinensis HOM05D004707 ORTHO05D005837 8.6e-20 100.5 60 86.7
BcaB01g02199 Brassica carinata HOM05D004707 ORTHO05D005837 1.5e-19 99.8 60 80.0
Eucgr.D02313 Eucalyptus grandis HOM05D004707 ORTHO05D005837 2.5e-19 99.0 60 80.0
Thecc.01G355200 Theobroma cacao HOM05D004707 ORTHO05D005837 2.5e-19 99.0 60 83.3
PGR031G2856 Punica granatum HOM05D004707 ORTHO05D005837 3.3e-19 98.6 60 81.7
THA.LOC104825856 Tarenaya hassleriana HOM05D004707 ORTHO05D005837 7.3e-19 97.4 60 80.0
Actinidia18541 Actinidia chinensis HOM05D004707 ORTHO05D005837 9.5e-19 97.1 60 83.3
Gohir.A08G032300 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.2e-18 96.7 69 72.5
Gohir.D08G043200 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.2e-18 96.7 69 72.5
Gorai.004G041800 Gossypium raimondii HOM05D004707 ORTHO05D005837 1.2e-18 96.7 69 72.5
Sc06g0007250 Simmondsia chinensis HOM05D004707 ORTHO05D005837 1.2e-18 96.7 60 81.7
AL6G53230 Arabidopsis lyrata HOM05D004707 ORTHO05D005837 2.1e-18 95.9 78 65.4
AT4G00290 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 2.1e-18 95.9 78 65.4
CANSAT56G0368 Cannabis sativa HOM05D004707 ORTHO05D005837 2.1e-18 95.9 68 76.5
CiPaw.01G064900 Carya illinoinensis HOM05D004707 ORTHO05D005837 2.1e-18 95.9 60 81.7
Nn6g33309 Nelumbo nucifera HOM05D004707 ORTHO05D005837 2.1e-18 95.9 60 85.0
SGA_v2.0_scaffold95G28817 Striga asiatica HOM05D004707 ORTHO05D005837 2.1e-18 95.9 69 73.9
Carub.0006s3698 Capsella rubella HOM05D004707 ORTHO05D005837 2.8e-18 95.5 60 78.3
CARHR248350 Cardamine hirsuta HOM05D004707 ORTHO05D005837 2.8e-18 95.5 78 65.4
PSO063G6595 Papaver somniferum HOM05D004707 ORTHO05D005837 2.8e-18 95.5 69 72.5
Prupe.2G174600 Prunus persica HOM05D004707 ORTHO05D005837 2.8e-18 95.5 60 76.7
Dinv43847 Davidia involucrata HOM05D004707 ORTHO05D005837 4.7e-18 94.7 60 81.7
Lj3g0007734 Lotus japonicus HOM05D004707 ORTHO05D005837 4.7e-18 94.7 60 80.0
HanXRQChr16g0520681 Helianthus annuus HOM05D004707 ORTHO05D005837 6.2e-18 94.4 69 72.5
Sp6g00340 Schrenkiella parvula HOM05D004707 ORTHO05D005837 6.2e-18 94.4 78 62.8
Thhalv10028609m.g Eutrema salsugineum HOM05D004707 ORTHO05D005837 8.0e-18 94.0 79 63.3
Ca_23597_v3 Cicer arietinum L. HOM05D004707 ORTHO05D005837 1.1e-17 93.6 60 75.0
Psat4g156520 Pisum sativum HOM05D004707 ORTHO05D005837 1.1e-17 93.6 60 73.3
ATR0661G226 Amborella trichopoda HOM05D004707 ORTHO05D005837 1.4e-17 93.2 60 80.0
Lsat_1_v5_gn_4_43000 Lactuca sativa HOM05D004707 ORTHO05D005837 1.4e-17 93.2 69 71.0
Medtr8g028760 Medicago truncatula HOM05D004707 ORTHO05D005837 1.4e-17 93.2 60 73.3
Phvul.010G102400 Phaseolus vulgaris HOM05D004707 ORTHO05D005837 1.4e-17 93.2 69 68.1
TWI59G0961 Tripterygium wilfordii HOM05D004707 ORTHO05D005837 1.4e-17 93.2 69 66.7
arahy.Tifrunner.gnm1.ann1.HL3201 Arachis hypogaea HOM05D004707 ORTHO05D005837 1.8e-17 92.8 60 76.7
arahy.Tifrunner.gnm1.ann1.YM6R3T Arachis hypogaea HOM05D004707 ORTHO05D005837 1.8e-17 92.8 60 76.7
Aa31LG5G670 Aethionema arabicum HOM05D004707 ORTHO05D005837 2.3e-17 92.4 60 76.7
Glyma.16G033400 Glycine max HOM05D004707 ORTHO05D005837 2.3e-17 92.4 69 66.7
MD01G1068400 Malus domestica HOM05D004707 ORTHO05D005837 2.3e-17 92.4 60 75.0
VMungo0331G0696 Vigna mungo HOM05D004707 ORTHO05D005837 2.3e-17 92.4 69 66.7
Atru.chr5.540 Acer truncatum HOM05D004707 ORTHO05D005837 3.1e-17 92.0 69 69.6
Hund16663 Selenicereus undatus HOM05D004707 ORTHO05D005837 3.1e-17 92.0 60 76.7
TPR.G14976 Trifolium pratense HOM05D004707 ORTHO05D005837 3.1e-17 92.0 60 73.3
Glyma.07G067400 Glycine max HOM05D004707 ORTHO05D005837 4.0e-17 91.7 69 63.8
Lalb_Chr04g0259171 Lupinus albus HOM05D004707 ORTHO05D005837 4.0e-17 91.7 69 68.1
COL.COLO4_12751 Corchorus olitorius HOM05D004707 ORTHO05D005837 5.2e-17 91.3 60 80.0
Oeu015224.1 Olea europaea HOM05D004707 ORTHO05D005837 5.2e-17 91.3 60 76.7
MELO3C006094.2 Cucumis melo HOM05D004707 ORTHO05D005837 6.8e-17 90.9 60 78.3
Lj9C587T4 Lonicera japonica HOM05D004707 ORTHO05D005837 6.8e-17 90.9 69 71.0
RcHm_v2.0_Chr1g0357041 Rosa chinensis HOM05D004707 ORTHO05D005837 8.9e-17 90.5 61 75.4
MBI09_g26550_MAGBIO Magnolia biondii HOM05D004707 ORTHO05D005837 1.2e-16 90.1 59 81.4
Haze_15544 Corylus avellana HOM05D004707 ORTHO05D005837 1.5e-16 89.7 69 69.6
AT4G00234 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 2.0e-16 89.4 57 77.2
FvH4_7g15010 Fragaria vesca HOM05D004707 ORTHO05D005837 2.0e-16 89.4 61 75.4
FAN01G2554 Fragaria x ananassa HOM05D004707 ORTHO05D005837 2.0e-16 89.4 61 75.4
FAN03G0218 Fragaria x ananassa HOM05D004707 ORTHO05D005837 2.0e-16 89.4 61 75.4
FAN06G2758 Fragaria x ananassa HOM05D004707 ORTHO05D005837 2.0e-16 89.4 61 75.4
FAN06G3707 Fragaria x ananassa HOM05D004707 ORTHO05D005837 2.0e-16 89.4 61 75.4
FAN10G1283 Fragaria x ananassa HOM05D004707 ORTHO05D005837 2.0e-16 89.4 61 75.4
Manes.01G254000 Manihot esculenta HOM05D004707 ORTHO05D005837 2.6e-16 89.0 60 73.3
ClCG05G001380 Citrullus lanatus HOM05D004707 ORTHO05D005837 3.4e-16 88.6 60 75.0
Cc00_g17840 Coffea canephora HOM05D004707 ORTHO05D005837 3.4e-16 88.6 60 78.3
Gohir.D12G111000 Gossypium hirsutum HOM05D004707 ORTHO05D005837 3.4e-16 88.6 60 75.0
Lalb_Chr17g0339181 Lupinus albus HOM05D004707 ORTHO05D005837 3.4e-16 88.6 69 65.2
FAN10G2784 Fragaria x ananassa HOM05D004707 ORTHO05D005837 4.4e-16 88.2 61 75.4
Gorai.008G120200 Gossypium raimondii HOM05D004707 ORTHO05D005837 4.4e-16 88.2 60 75.0
Solyc10g012060.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 4.4e-16 88.2 60 75.0
Sopen10g005800 Solanum pennellii HOM05D004707 ORTHO05D005837 4.4e-16 88.2 60 75.0
CsaV3_3G008770 Cucumis sativus L. HOM05D004707 ORTHO05D005837 5.8e-16 87.8 60 75.0
Sed0023991 Sechium edule HOM05D004707 ORTHO05D005837 7.5e-16 87.4 60 75.0
Peaxi162Scf00585g00318 Petunia axillaris HOM05D004707 ORTHO05D005837 9.8e-16 87.0 60 73.3
Aqoxy5G00593 Aquilegia oxysepala HOM05D004707 ORTHO05D005837 1.3e-15 86.7 60 76.7
Nitab4.5_0000200g0180 Nicotiana tabacum HOM05D004707 ORTHO05D005837 1.7e-15 86.3 65 69.2
Nitab4.5_0000690g0060 Nicotiana tabacum HOM05D004707 ORTHO05D005837 1.7e-15 86.3 60 71.7
Peaxi162Scf00020g01222 Petunia axillaris HOM05D004707 ORTHO05D005837 1.7e-15 86.3 60 75.0
Potri.014G088200 Populus trichocarpa HOM05D004707 ORTHO05D005837 2.2e-15 85.9 69 69.6
SEGI_13365 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 2.2e-15 85.9 68 69.1
Gohir.A12G107750 Gossypium hirsutum HOM05D004707 ORTHO05D005837 3.7e-15 85.1 72 63.9
AUR62004395 Chenopodium quinoa HOM05D004707 ORTHO05D005837 4.9e-15 84.7 69 65.2
EL10Ac1g00374 Beta vulgaris HOM05D004707 ORTHO05D005837 6.4e-15 84.3 60 70.0
CAN.G91.14 Capsicum annuum HOM05D004707 ORTHO05D005837 6.4e-15 84.3 60 71.7
AUR62022601 Chenopodium quinoa HOM05D004707 ORTHO05D005837 8.3e-15 84.0 60 71.7
Potri.002G162100 Populus trichocarpa HOM05D004707 ORTHO05D005837 8.3e-15 84.0 69 68.1
Pp3c10_20950 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.1e-14 83.6 60 70.0
Rhsim01G0164800 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.1e-14 83.6 60 76.7
Ah.05g180290 Amaranthus hybridus HOM05D004707 ORTHO05D005837 1.4e-14 83.2 60 65.0
vmacro20909 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 4.1e-14 81.6 69 69.6
Rhsim07G0012400 Rhododendron simsii HOM05D004707 ORTHO05D005837 5.4e-14 81.3 69 62.3
HPP92_025632 Vanilla planifolia HOM05D004707 ORTHO05D005837 5.4e-14 81.3 60 66.7
DCAR_008625 Daucus carota HOM05D001113 ORTHO05D000968 1.2e-13 80.1 66 69.7
Solyc10g012050.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 1.2e-13 80.1 60 65.0
Sopen10g005790 Solanum pennellii HOM05D004707 ORTHO05D005837 2.0e-13 79.3 60 63.3
Migut.B01788 Erythranthe guttata HOM05D004707 ORTHO05D005837 1.5e-11 73.2 69 59.4
Os02g0681000 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 2.5e-11 72.4 68 55.9
vmacro13252 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 3.3e-11 72.0 69 56.5
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 9.5e-11 70.5 60 56.7
unitig_26.g9294 Utricularia gibba HOM05D004707 ORTHO05D005837 1.6e-10 69.7 60 56.7
Zm00001eb073200 Zea mays HOM05D004707 ORTHO05D005837 2.8e-10 68.9 60 53.3
AagrBONN_evm.TU.Sc2ySwM_344.1481 Anthoceros agrestis HOM05D004707 ORTHO05D005837 4.7e-10 68.2 69 55.1
Pp3c14_810 Physcomitrium patens HOM05D004707 ORTHO05D005837 4.7e-10 68.2 61 62.3
ECA234G0026 Erigeron canadensis HOM05D004707 ORTHO05D005837 8.1e-10 67.4 69 55.1
HanXRQChr09g0268301 Helianthus annuus HOM05D004707 ORTHO05D005837 1.1e-09 67.0 54 63.0
HanXRQChr11g0349701 Helianthus annuus HOM05D004707 ORTHO05D005837 1.1e-09 67.0 54 63.0
HanXRQChr17g0534491 Helianthus annuus HOM05D004707 ORTHO05D005837 1.1e-09 67.0 54 63.0
SHI13401 Sapria himalayana HOM05D004707 ORTHO05D005837 1.1e-09 67.0 66 50.0
Os04g0578700 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 2.3e-09 65.9 60 56.7
Pp3c15_19020 Physcomitrium patens HOM05D004707 ORTHO05D005837 2.3e-09 65.9 60 55.0
Pp3c9_20150 Physcomitrium patens HOM05D004707 ORTHO05D005837 6.8e-09 64.3 60 53.3
SMO116G0175 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 1.3e-07 60.1 60 53.3
Mapoly0001s0022 Marchantia polymorpha HOM05D004707 ORTHO05D005837 1.7e-07 59.7 69 46.4


User provided reference genes

Program Settings