Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.3e-210 736.1 368 100.0
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 3.8e-117 425.6 217 98.2
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 3.2e-108 396.0 211 92.9
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 3.6e-99 365.9 216 85.2
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 6.1e-99 365.2 216 83.8
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 1.8e-98 363.6 218 81.7
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 2.3e-98 363.2 216 81.9
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 8.8e-98 361.3 266 69.5
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 2.0e-97 360.1 216 81.0
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 3.7e-96 355.9 269 66.5
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 4.8e-96 355.5 269 66.5
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 4.8e-96 355.5 265 69.4
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 1.1e-95 354.4 215 82.3
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.4e-95 354.0 264 67.4
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 1.4e-95 354.0 213 79.3
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 1.8e-95 353.6 215 82.3
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 2.4e-95 353.2 214 82.2
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 5.3e-95 352.1 215 78.6
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.0e-93 347.8 260 69.2
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 1.0e-93 347.8 212 78.8
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 1.3e-93 347.4 212 78.8
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 1.3e-93 347.4 210 78.1
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 1.7e-93 347.1 210 78.1
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 2.9e-93 346.3 264 67.4
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 2.9e-93 346.3 232 76.3
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 5.0e-93 345.5 224 75.0
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 1.1e-92 344.4 214 78.0
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 1.9e-92 343.6 210 78.1
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 2.5e-92 343.2 206 79.1
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 3.2e-92 342.8 210 78.1
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 3.2e-92 342.8 234 73.9
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 9.4e-92 341.3 210 78.1
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 9.4e-92 341.3 219 75.8
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 1.2e-91 340.9 208 78.8
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 1.6e-91 340.5 209 78.0
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 2.1e-91 340.1 205 77.6
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.1e-91 340.1 277 65.7
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 3.6e-91 339.3 209 78.9
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 4.7e-91 339.0 208 78.4
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 4.7e-91 339.0 241 73.0
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 4.7e-91 339.0 215 76.3
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 4.7e-91 339.0 215 76.3
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 6.1e-91 338.6 205 77.1
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 6.1e-91 338.6 221 74.2
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 6.1e-91 338.6 208 77.4
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 1.0e-90 337.8 216 75.9
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 1.4e-90 337.4 205 77.1
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.4e-90 337.4 262 67.9
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.4e-90 337.4 205 77.6
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.4e-90 337.4 205 77.6
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 1.8e-90 337.0 214 78.0
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 1.8e-90 337.0 225 76.0
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.3e-90 336.7 216 75.5
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 3.0e-90 336.3 224 73.7
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 3.0e-90 336.3 224 73.7
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 3.0e-90 336.3 224 73.7
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 3.0e-90 336.3 224 73.7
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 3.0e-90 336.3 224 73.7
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 4.0e-90 335.9 209 77.5
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 4.0e-90 335.9 209 77.5
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 4.0e-90 335.9 262 67.6
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 4.0e-90 335.9 262 67.6
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 4.0e-90 335.9 205 77.6
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.5e-89 334.0 260 67.7
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 1.5e-89 334.0 205 75.1
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 3.3e-89 332.8 213 75.6
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 3.3e-89 332.8 216 73.6
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 4.4e-89 332.4 214 75.7
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 1.3e-88 330.9 213 75.6
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 2.8e-88 329.7 226 72.1
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 4.8e-88 328.9 224 71.0
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 6.3e-88 328.6 214 73.4
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 2.4e-87 326.6 216 75.9
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 2.4e-87 326.6 205 74.6
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 5.3e-87 325.5 216 76.4
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 5.3e-87 325.5 207 73.9
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 9.1e-87 324.7 265 64.9
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 1.2e-86 324.3 216 75.0
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 2.7e-86 323.2 230 68.7
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 2.7e-86 323.2 213 76.1
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 3.5e-86 322.8 217 74.2
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 4.5e-86 322.4 207 75.8
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 7.7e-86 321.6 213 71.8
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 7.7e-86 321.6 213 75.6
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 1.3e-85 320.9 212 71.2
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 2.2e-85 320.1 208 75.0
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 2.2e-85 320.1 213 75.6
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 3.8e-85 319.3 216 75.0
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 3.8e-85 319.3 205 74.6
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 1.1e-84 317.8 214 72.4
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 1.1e-84 317.8 213 72.3
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 2.1e-83 313.5 208 70.2
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 2.1e-83 313.5 198 73.7
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 2.0e-81 307.0 205 75.1
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 2.0e-81 307.0 190 73.7
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 5.7e-81 305.4 213 70.0
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.3e-80 304.3 197 73.1
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.3e-80 304.3 197 73.1
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 1.4e-79 300.8 202 73.8
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 3.1e-79 299.7 206 71.8
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 5.4e-79 298.9 253 62.8
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 2.9e-69 266.5 217 65.0
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 8.9e-66 255.0 240 60.4
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 7.8e-62 241.9 211 54.5
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 1.9e-60 237.3 212 53.8
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 3.9e-53 213.0 216 51.4
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 1.4e-50 204.5 242 47.5
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 8.3e-48 195.3 117 82.9
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 1.6e-46 191.0 223 50.7
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 2.3e-45 187.2 122 78.7
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 1.3e-40 171.4 96 80.2
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 8.4e-40 168.7 96 78.1
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 4.7e-35 152.9 223 43.9
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 4.2e-31 139.8 135 51.1
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 3.5e-30 136.7 96 63.5
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 3.5e-22 110.2 67 83.6
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 8.7e-21 105.5 106 59.4
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 3.7e-19 100.1 63 69.8
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 4.8e-19 99.8 65 67.7
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 5.8e-17 92.8 79 63.3
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 1.1e-15 88.6 103 52.4
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 2.5e-15 87.4 61 73.8
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 1.0e-13 82.0 97 45.4
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 2.5e-12 77.4 160 33.8
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 1.4e-10 71.6 232 32.8
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 7.6e-09 65.9 57 64.9
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 6.1e-06 56.2 79 49.4


User provided reference genes

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