Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 0.0e+00 1457.6 727 100.0
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 0.0e+00 1259.6 731 86.3
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 0.0e+00 1254.2 730 86.6
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1228.0 721 85.4
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 0.0e+00 1216.4 732 84.2
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1212.2 735 83.0
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1211.4 750 82.4
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1210.7 750 82.3
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1207.2 730 84.1
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1200.7 718 83.8
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 0.0e+00 1199.9 718 84.0
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 0.0e+00 1197.6 717 84.8
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 0.0e+00 1183.3 732 82.1
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1182.5 737 82.1
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 0.0e+00 1181.0 714 83.3
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 0.0e+00 1181.0 648 90.4
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 0.0e+00 1179.9 713 82.3
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1176.4 730 83.2
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 0.0e+00 1174.8 724 81.4
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 0.0e+00 1174.5 732 82.0
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 0.0e+00 1174.5 727 81.8
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 0.0e+00 1173.7 733 81.7
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1173.3 722 82.8
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 0.0e+00 1172.9 723 82.6
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 0.0e+00 1171.8 723 82.3
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 0.0e+00 1171.8 707 83.7
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1167.5 725 81.9
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 0.0e+00 1162.9 731 80.7
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 0.0e+00 1162.9 715 82.0
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 0.0e+00 1162.5 713 83.3
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1162.1 706 82.6
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 0.0e+00 1161.7 733 80.2
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 0.0e+00 1159.4 703 82.9
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 0.0e+00 1159.1 696 84.1
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 0.0e+00 1158.7 731 80.2
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1158.7 759 78.3
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 0.0e+00 1158.7 696 82.2
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 0.0e+00 1157.5 643 88.0
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 0.0e+00 1157.1 656 87.3
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1156.0 733 79.7
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 0.0e+00 1156.0 728 80.6
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 0.0e+00 1153.7 672 85.0
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 0.0e+00 1150.6 727 79.2
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1150.6 761 78.2
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 0.0e+00 1150.2 693 82.4
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 0.0e+00 1150.2 693 83.0
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 0.0e+00 1148.7 651 86.5
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1146.7 786 74.9
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1146.7 786 74.9
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1144.4 678 83.8
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 0.0e+00 1137.1 716 79.6
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 0.0e+00 1137.1 702 82.2
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 0.0e+00 1136.7 721 79.9
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1134.4 697 81.5
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 0.0e+00 1133.6 926 66.3
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 0.0e+00 1129.4 735 79.2
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 0.0e+00 1127.5 730 79.6
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 0.0e+00 1126.7 642 85.8
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 0.0e+00 1124.8 656 84.5
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 0.0e+00 1123.6 724 78.9
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 0.0e+00 1123.2 718 79.7
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1122.1 640 86.4
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 0.0e+00 1122.1 715 80.1
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 0.0e+00 1119.0 720 79.0
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1116.3 638 86.2
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 0.0e+00 1115.9 638 86.2
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 0.0e+00 1114.8 756 75.5
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1112.4 638 86.2
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1112.4 638 86.2
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 0.0e+00 1105.5 656 84.0
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 0.0e+00 1103.2 646 82.2
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 0.0e+00 1102.8 666 80.5
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 0.0e+00 1102.4 707 79.5
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 0.0e+00 1096.3 745 76.9
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 0.0e+00 1094.7 731 77.2
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 0.0e+00 1091.6 709 78.8
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 0.0e+00 1091.3 694 80.5
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 0.0e+00 1087.4 728 77.2
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 9.9e-312 1073.2 727 75.1
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 2.9e-310 1068.1 759 73.9
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 1.9e-309 1065.4 727 75.4
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 1.9e-306 1055.4 781 72.1
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 2.4e-301 1038.5 663 79.9
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 1.0e-291 1006.5 627 78.1
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 1.4e-288 996.1 557 87.8
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 4.5e-287 991.1 655 73.3
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 6.7e-283 977.2 623 76.6
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 1.7e-278 962.6 563 86.3
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 1.4e-275 953.0 529 88.8
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 1.5e-271 939.5 562 84.3
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 2.0e-271 939.1 521 88.7
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 1.7e-270 936.0 566 83.7
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 2.5e-269 932.2 517 88.6
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 2.7e-268 928.7 532 84.6
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 1.0e-267 926.8 638 73.4
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 3.0e-267 925.2 602 74.8
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 2.7e-260 902.1 588 77.0
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 2.3e-259 899.0 605 75.4
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 2.2e-257 892.5 634 69.6
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 1.2e-242 843.6 632 66.1
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 8.3e-241 837.4 513 82.7
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 3.0e-235 818.9 494 82.4
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 9.2e-224 780.8 610 64.9
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 1.7e-222 776.5 504 78.2
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 2.0e-194 683.3 389 83.8
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 1.3e-190 670.6 407 82.8
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 1.4e-184 650.6 413 77.5
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 3.2e-184 649.4 352 89.8
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 3.8e-177 625.9 401 77.6
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 6.7e-158 562.0 342 81.3
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 1.7e-148 530.8 447 65.3
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 3.5e-130 469.9 596 43.3
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 4.4e-125 453.0 690 38.3
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 1.6e-114 417.9 358 64.0
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 6.1e-111 406.0 368 59.8
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 2.3e-110 404.1 662 38.1
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 1.5e-104 384.8 509 43.8
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 1.7e-97 361.3 328 59.8
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 6.6e-97 359.4 229 81.2
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 1.2e-82 312.0 169 91.7
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 6.6e-73 279.6 161 84.5
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 4.2e-59 233.8 214 57.0
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 3.0e-57 227.6 162 66.7
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 6.3e-55 219.9 203 64.5
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 1.9e-48 198.4 148 73.0
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 1.4e-46 192.2 254 49.6
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 2.0e-40 171.8 230 44.8
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 9.7e-40 169.5 185 46.5
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 1.1e-38 166.0 143 60.1
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 3.8e-36 157.5 112 68.8
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 8.5e-36 156.4 106 72.6
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 4.7e-34 150.6 95 75.8
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 1.0e-33 149.4 74 94.6
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 8.8e-33 146.4 139 60.4
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 5.7e-32 143.7 83 83.1
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 2.8e-31 141.4 97 75.3
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 3.1e-30 137.9 71 81.7
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 2.0e-29 135.2 93 75.3
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 3.6e-26 124.4 97 66.0
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 2.9e-20 104.8 60 83.3
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 7.5e-16 90.1 47 76.6
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 2.8e-15 88.2 67 65.7
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 6.3e-15 87.0 77 58.4
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 1.8e-14 85.5 48 75.0


User provided reference genes

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