Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 2.3e-248 861.7 412 100.0
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 1.3e-190 669.8 400 79.2
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 7.8e-188 660.6 393 79.4
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 3.0e-187 658.7 407 76.4
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 7.3e-186 654.1 393 78.6
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 1.1e-184 650.2 401 74.6
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 5.8e-183 644.4 407 72.7
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.2e-180 636.7 410 72.9
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.5e-178 629.8 414 71.3
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 2.8e-177 625.5 410 72.4
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 1.2e-175 620.2 412 70.4
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 1.2e-175 620.2 412 70.4
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 1.5e-175 619.8 400 71.5
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 7.6e-175 617.5 414 70.3
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 1.0e-174 617.1 415 71.6
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 1.7e-174 616.3 412 69.9
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 2.7e-172 609.0 404 69.6
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 1.3e-171 606.7 411 67.2
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 1.8e-171 606.3 404 68.3
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 5.1e-171 604.7 403 69.7
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 2.8e-169 599.0 401 69.6
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 6.9e-168 594.3 399 69.7
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 9.0e-168 594.0 401 69.1
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 2.6e-167 592.4 413 64.9
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 4.5e-167 591.7 403 68.2
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 5.8e-167 591.3 400 67.8
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 7.6e-167 590.9 411 68.1
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.9e-166 589.0 401 67.6
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 3.8e-166 588.6 401 68.3
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 3.8e-166 588.6 400 67.2
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 5.0e-166 588.2 407 67.8
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 5.0e-166 588.2 406 68.5
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.1e-165 587.0 423 66.7
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.1e-165 587.0 400 66.8
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 1.9e-165 586.3 404 66.8
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 4.2e-165 585.1 408 67.2
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 4.2e-165 585.1 399 67.7
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 7.1e-165 584.3 389 69.2
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 9.3e-165 583.9 404 65.6
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 9.3e-165 583.9 407 66.6
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 1.6e-164 583.2 408 66.7
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.6e-164 583.2 401 67.6
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.6e-164 583.2 401 70.1
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 2.1e-164 582.8 401 67.8
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.7e-164 582.4 401 67.1
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 4.6e-164 581.6 401 67.1
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 7.9e-164 580.9 401 65.8
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.0e-163 580.5 402 66.7
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 1.3e-163 580.1 409 66.3
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 1.3e-163 580.1 408 66.7
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.0e-163 578.9 404 66.3
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 3.9e-163 578.6 408 66.2
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 8.7e-163 577.4 407 66.1
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 8.7e-163 577.4 400 66.2
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 1.9e-162 576.2 407 66.1
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 2.5e-162 575.9 407 65.8
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 2.5e-162 575.9 407 65.8
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 4.3e-162 575.1 407 65.8
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 4.3e-162 575.1 408 65.4
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 9.7e-162 573.9 404 66.8
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 1.6e-161 573.2 408 65.9
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 1.6e-161 573.2 408 65.9
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.4e-160 570.1 406 65.3
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 2.4e-160 569.3 404 64.9
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 1.2e-159 567.0 409 65.3
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 2.6e-159 565.8 410 65.1
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 2.6e-159 565.8 409 66.0
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 4.5e-159 565.1 406 65.0
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 8.5e-158 560.8 408 64.2
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 9.4e-157 557.4 387 67.2
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 2.1e-156 556.2 392 67.1
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.7e-156 555.8 384 66.4
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 1.0e-155 553.9 409 64.5
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 1.0e-155 553.9 400 64.5
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 3.9e-155 552.0 406 63.3
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 5.1e-155 551.6 406 62.3
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 6.7e-155 551.2 403 63.0
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 4.3e-154 548.5 406 62.1
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 5.7e-154 548.1 406 64.0
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.1e-152 543.9 399 63.7
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.8e-152 543.1 399 63.4
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 5.9e-151 538.1 406 62.3
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.7e-150 536.6 388 63.4
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 2.2e-150 536.2 399 61.9
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 5.0e-150 535.0 387 63.6
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 1.1e-149 533.9 412 60.9
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 3.2e-149 532.3 400 62.8
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 7.2e-149 531.2 400 61.5
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 2.1e-148 529.6 409 62.6
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 2.7e-148 529.3 412 59.7
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 1.0e-147 527.3 406 61.8
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 2.3e-147 526.2 413 59.1
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 6.7e-147 524.6 406 61.6
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 5.7e-146 521.5 391 63.9
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 7.4e-146 521.2 398 60.3
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 2.2e-145 519.6 405 62.5
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 8.2e-145 517.7 402 61.2
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 7.0e-144 514.6 404 60.1
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 2.0e-143 513.1 403 61.5
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 1.1e-141 507.3 394 58.6
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 3.2e-141 505.8 384 60.2
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 2.1e-140 503.1 384 59.6
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 1.4e-139 500.4 388 59.0
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 3.0e-139 499.2 414 57.5
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.2e-139 498.4 383 60.1
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.2e-139 498.4 383 60.1
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.7e-137 493.4 423 59.8
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 6.3e-137 491.5 418 58.6
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 3.1e-136 489.2 392 57.1
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 4.1e-136 488.8 384 57.8
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 1.6e-135 486.9 387 56.8
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 2.0e-135 486.5 394 57.1
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 1.5e-133 480.3 385 56.9
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.9e-133 479.9 372 58.9
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.9e-133 479.9 372 58.9
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 2.5e-133 479.6 385 56.6
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 9.4e-133 477.6 384 57.6
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 1.4e-131 473.8 391 58.1
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 8.3e-129 464.5 409 54.3
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 1.1e-128 464.2 388 54.9
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 4.5e-127 458.8 405 56.3
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 3.2e-125 452.6 402 55.7
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.5e-122 443.7 407 53.6
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 5.7e-122 441.8 388 53.1
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.4e-115 420.6 399 53.4
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 8.9e-115 417.9 378 56.1
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 8.9e-115 417.9 398 52.8
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 1.5e-109 400.6 404 49.8
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 3.3e-109 399.4 392 51.8
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 1.6e-108 397.1 413 48.4
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 3.1e-107 392.9 405 46.7
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 5.6e-101 372.1 406 48.8
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 3.4e-98 362.8 398 48.0
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.0e-94 349.7 404 46.8
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 4.6e-87 325.9 405 44.7
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 6.0e-87 325.5 395 46.1
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 3.6e-84 316.2 404 41.6
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 5.8e-82 308.9 405 44.9
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 1.9e-80 303.9 407 42.3
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 3.2e-80 303.1 398 43.7
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 7.8e-79 298.5 253 54.9
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.7e-70 270.8 227 56.8
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 1.9e-64 250.8 186 61.8
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 2.4e-59 233.8 421 34.7
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 3.5e-55 219.9 156 60.3
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 3.4e-42 176.8 155 56.1
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 4.1e-35 153.3 319 32.9
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 5.0e-33 146.4 134 57.5
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 8.5e-33 145.6 389 27.2
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 1.8e-30 137.9 120 55.0
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 2.7e-23 114.0 78 64.1
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 9.7e-21 105.5 404 26.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.7e-10 70.9 222 26.1
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 7.7e-10 69.3 40 80.0
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 4.2e-08 63.5 403 22.3
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 4.2e-08 63.5 403 22.3
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 5.5e-08 63.2 396 22.5
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 9.5e-08 62.4 47 51.1
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 2.7e-07 60.8 404 23.8
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 2.3e-06 57.8 391 22.0
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 2.3e-06 57.8 400 21.5
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 3.0e-06 57.4 394 21.3
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 5.2e-06 56.6 58 43.1


User provided reference genes

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