Gene: Nitab4.5_0004131g0050
General Information
Structural Information
- Species Nicotiana tabacum
- Gene Identifier Nitab4.5_0004131g0050
- Transcript Identifier Nitab4.5_0004131g0050.1
- Gene Type Coding gene
- Location Nitab4.5_0004131 : 219828-228768 : negative
Gene Family Information
- ID HOM05D004578
- #Genes/#Species 158/97
- Phylogenetic origin
- ID ORTHO05D005529
- #Genes/#Species 156/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Nitab4.5_0004131g0050.1
- SR1-identifier Nta23g04130.1
Descriptions
- Description Zinc finger, CCHC-type, Nucleotide-binding, alpha-beta plait, FAD dependent oxidoreductase, RNA recognition motif domain
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0016491 | IEA | InterPro | oxidoreductase activity | |
| GO:0008115 | ISO | PLAZA Integrative Orthology | sarcosine oxidase activity | AT2G24580 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036875 | Zinc finger, CCHC-type superfamily |
| IPR000504 | RNA recognition motif domain |
| IPR006076 | FAD dependent oxidoreductase |
| IPR035979 | RNA-binding domain superfamily |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR036188 | FAD/NAD(P)-binding domain superfamily |
| IPR001878 | Zinc finger, CCHC-type |
| Mapman id | Description |
|---|---|
| 16.2.6.4 | RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (RSZ21/22) |
| 26.9.3.1.5.4 | External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).pipecolic acid metabolism.pipecolate oxidase (SOX) |