Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0988 Trochodendron aralioides HOM05D003481 ORTHO05D004001 7.3e-156 553.9 289 100.0
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 4.9e-120 434.9 286 82.2
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 1.1e-100 370.5 283 74.2
ATR1132G122 Amborella trichopoda HOM05D003481 ORTHO05D004001 4.0e-98 362.1 265 70.2
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 3.2e-95 352.4 280 71.4
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 3.5e-94 349.0 288 67.7
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 3.0e-93 345.9 258 74.0
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 3.7e-91 339.0 265 70.2
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 2.4e-90 336.3 259 70.3
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 6.9e-90 334.7 259 69.9
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 5.9e-89 331.6 259 70.3
Lj1A1155T51 Lonicera japonica HOM05D003481 ORTHO05D004001 5.9e-89 331.6 276 67.0
Manes.03G070216 Manihot esculenta HOM05D003481 ORTHO05D004001 2.9e-88 329.3 258 68.6
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 3.8e-88 328.9 257 70.0
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 5.0e-88 328.6 262 65.6
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 1.1e-87 327.4 278 66.2
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 1.9e-87 326.6 264 68.2
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 9.4e-87 324.3 265 67.9
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 4.6e-86 322.0 265 67.5
SEGI_08137 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 4.6e-86 322.0 245 66.1
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 1.8e-85 320.1 253 65.2
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 1.1e-84 317.4 262 68.7
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 1.5e-84 317.0 295 61.4
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 1.3e-83 313.9 266 66.5
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 1.7e-83 313.5 262 66.8
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 1.7e-83 313.5 262 66.8
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 2.2e-83 313.2 246 70.3
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 2.8e-83 312.8 246 69.9
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 3.7e-83 312.4 246 70.3
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 6.3e-83 311.6 268 66.8
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 6.3e-83 311.6 269 66.5
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 1.4e-82 310.5 287 62.0
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 1.4e-82 310.5 269 65.8
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 1.4e-82 310.5 286 61.2
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 1.8e-82 310.1 270 65.6
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 2.4e-82 309.7 262 66.4
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 2.4e-82 309.7 263 64.6
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 2.4e-82 309.7 262 66.4
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 3.1e-82 309.3 261 67.0
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 4.1e-82 308.9 262 66.0
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 4.1e-82 308.9 246 68.3
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 5.3e-82 308.5 264 65.9
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 6.9e-82 308.1 267 64.8
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 6.9e-82 308.1 259 66.8
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 6.9e-82 308.1 269 64.7
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 9.1e-82 307.8 269 64.7
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 9.1e-82 307.8 269 64.7
Actinidia29310 Actinidia chinensis HOM05D003481 ORTHO05D004001 2.0e-81 306.6 287 62.0
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 2.6e-81 306.2 262 66.0
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 7.7e-81 304.7 260 63.8
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 1.0e-80 304.3 269 64.3
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 1.0e-80 304.3 261 64.8
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 1.7e-80 303.5 280 61.4
Cpa.g.sc192.16 Carica papaya HOM05D003481 ORTHO05D004001 5.0e-80 302.0 280 61.4
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 1.1e-79 300.8 263 62.4
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 1.4e-79 300.4 261 63.6
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 1.4e-79 300.4 261 64.0
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 1.4e-79 300.4 278 60.8
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 1.9e-79 300.1 262 63.0
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 1.9e-79 300.1 258 66.7
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 4.2e-79 298.9 246 67.5
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 1.2e-78 297.4 262 62.2
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 1.2e-78 297.4 277 63.2
Haze_05983 Corylus avellana HOM05D003481 ORTHO05D004001 1.6e-78 297.0 275 62.2
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 3.6e-78 295.8 279 60.6
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 7.9e-78 294.7 262 62.2
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 1.4e-77 293.9 261 61.7
arahy.Tifrunner.gnm1.ann1.R9RUHP Arachis hypogaea HOM05D003481 ORTHO05D004001 1.4e-77 293.9 261 61.7
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 6.7e-77 291.6 280 60.7
CSS0036853 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 1.5e-76 290.4 263 63.1
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 2.0e-76 290.0 266 60.9
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 4.4e-76 288.9 263 61.2
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 9.7e-76 287.7 259 61.8
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 2.8e-75 286.2 262 60.7
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 4.8e-75 285.4 209 71.3
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 4.1e-74 282.3 262 61.5
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 5.3e-74 282.0 214 69.2
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 7.0e-74 281.6 266 61.7
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 7.0e-74 281.6 276 56.2
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 9.1e-74 281.2 209 70.8
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 1.2e-73 280.8 214 68.7
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.2e-73 280.8 209 70.3
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 3.5e-73 279.3 259 60.6
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 3.5e-73 279.3 259 62.5
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 1.7e-72 276.9 269 58.4
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 5.0e-72 275.4 266 60.2
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 8.5e-72 274.6 264 58.7
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 8.5e-72 274.6 249 59.0
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 2.5e-71 273.1 263 59.7
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 3.2e-71 272.7 275 58.5
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 4.2e-71 272.3 266 59.0
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 9.4e-71 271.2 259 60.2
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 2.1e-70 270.0 265 57.0
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 3.6e-70 269.2 268 57.8
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 2.3e-69 266.5 269 57.6
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 5.2e-69 265.4 244 59.0
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 2.6e-68 263.1 275 58.2
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 2.6e-68 263.1 210 67.1
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 2.6e-68 263.1 210 67.1
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 7.4e-68 261.5 277 56.3
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 1.3e-67 260.8 275 58.2
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 3.7e-67 259.2 251 53.0
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 3.7e-67 259.2 269 52.8
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 1.1e-66 257.7 258 58.1
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 1.4e-66 257.3 277 55.2
Solyc02g030100.4 Solanum lycopersicum HOM05D003481 ORTHO05D004001 1.8e-66 256.9 275 55.3
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 2.4e-66 256.5 262 56.5
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 3.1e-66 256.1 278 56.1
Peaxi162Scf00267g00085 Petunia axillaris HOM05D003481 ORTHO05D004001 3.1e-66 256.1 272 55.1
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 4.5e-65 252.3 286 53.8
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 7.7e-65 251.5 289 53.6
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 1.0e-64 251.1 262 55.7
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 5.0e-64 248.8 281 52.3
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 4.2e-63 245.7 259 53.7
Oeu051246.1 Olea europaea HOM05D003481 ORTHO05D004001 1.2e-62 244.2 267 53.6
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 1.4e-61 240.7 156 82.1
Nitab4.5_0001298g0050 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.8e-61 240.4 279 54.8
Nitab4.5_0000378g0090 Nicotiana tabacum HOM05D003481 ORTHO05D004001 5.2e-61 238.8 243 57.2
SHI31592 Sapria himalayana HOM05D003481 ORTHO05D004001 2.2e-59 233.4 276 51.4
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 8.3e-59 231.5 250 52.4
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 2.7e-57 226.5 243 50.6
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 4.0e-53 212.6 262 48.1
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 8.8e-53 211.5 257 47.9
CBR_g56099 Chara braunii HOM05D003481 ORTHO05D004001 1.5e-52 210.7 324 41.7
Os04g0212200 Oryza sativa ssp. japonica HOM05D003481 ORTHO05D004001 1.2e-49 201.1 195 55.4
Nitab4.5_0003773g0070 Nicotiana tabacum HOM05D003481 ORTHO05D004001 2.8e-43 179.9 136 67.6
BcaNung07304 Brassica carinata HOM05D003481 ORTHO05D004001 4.9e-35 152.5 151 56.3
FAN27G0233 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.2e-25 121.3 140 48.6
FAN18G3112 Fragaria x ananassa HOM05D003481 ORTHO05D004001 4.6e-25 119.4 105 56.2
FvH4_5g17630 Fragaria vesca HOM05D003481 ORTHO05D004001 6.0e-25 119.0 105 55.2
FvH4_4g15480 Fragaria vesca HOM05D003481 ORTHO05D004001 1.0e-24 118.2 98 58.2
FAN10G3643 Fragaria x ananassa HOM05D003481 ORTHO05D004001 3.3e-23 113.2 105 53.3
FvH4_4g15181 Fragaria vesca HOM05D003481 ORTHO05D004001 9.5e-23 111.7 105 54.3
FAN11G1212 Fragaria x ananassa HOM05D003481 ORTHO05D004001 5.8e-20 102.4 105 51.4
PRCOL_00001035 Prasinoderma coloniale HOM05D003481 ORTHO05D004001 2.4e-13 80.5 264 27.7
Sabra16G0301200 Salix brachista HOM05D003481 ORTHO05D004001 1.9e-10 70.9 94 42.6
Cfa023843 Carpinus fangiana HOM05D003481 ORTHO05D004001 1.6e-09 67.8 148 29.1
Cre02.g087551 Chlamydomonas reinhardtii HOM05D003481 ORTHO05D004001 1.6e-09 67.8 147 30.6
RcHm_v2.0_Chr2g0113461 Rosa chinensis HOM05D003481 ORTHO05D004001 3.6e-06 56.6 35 74.3


User provided reference genes

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