Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0986 Trochodendron aralioides HOM05D005621 ORTHO05D007248 1.2e-130 469.9 246 100.0
Nn1g06478 Nelumbo nucifera HOM05D005621 ORTHO05D007248 1.4e-96 356.7 248 77.8
PSO541G5241 Papaver somniferum HOM05D005621 ORTHO05D007248 5.7e-85 318.2 247 71.7
PSO675G9131 Papaver somniferum HOM05D005621 ORTHO05D007248 5.7e-85 318.2 247 71.7
Dinv40577 Davidia involucrata HOM05D005621 ORTHO05D007248 9.1e-83 310.8 246 70.7
Hma1.2p1_0208F.1_g088250 Hydrangea macrophylla HOM05D005621 ORTHO05D007248 1.0e-81 307.4 246 69.5
CDE02G0355 Ceratophyllum demersum HOM05D005621 ORTHO05D007248 4.2e-80 302.0 245 69.0
CDE05G0202 Ceratophyllum demersum HOM05D005621 ORTHO05D007248 2.1e-79 299.7 245 68.6
Manes.16G029300 Manihot esculenta HOM05D005621 ORTHO05D007248 1.0e-78 297.4 243 68.7
Lalb_Chr09g0327691 Lupinus albus HOM05D005621 ORTHO05D007248 2.3e-78 296.2 239 67.8
Dinv17326 Davidia involucrata HOM05D005621 ORTHO05D007248 4.0e-78 295.4 246 69.5
MELO3C007277.2 Cucumis melo HOM05D005621 ORTHO05D007248 1.5e-77 293.5 246 67.5
MBI18_g13183_MAGBIO Magnolia biondii HOM05D005621 ORTHO05D007248 1.5e-77 293.5 238 68.9
Aqoxy1G02371 Aquilegia oxysepala HOM05D005621 ORTHO05D007248 9.8e-77 290.8 245 66.5
Lalb_Chr16g0383871 Lupinus albus HOM05D005621 ORTHO05D007248 9.8e-77 290.8 245 65.3
CANSAT35G1861 Cannabis sativa HOM05D005621 ORTHO05D007248 3.7e-76 288.9 249 67.5
CiPaw.09G061400 Carya illinoinensis HOM05D005621 ORTHO05D007248 3.7e-76 288.9 247 66.0
ClCG01G023060 Citrullus lanatus HOM05D005621 ORTHO05D007248 1.4e-75 287.0 227 70.5
Potri.004G045700 Populus trichocarpa HOM05D005621 ORTHO05D007248 1.4e-75 287.0 252 64.7
GSVIVG01021083001 Vitis vinifera HOM05D005621 ORTHO05D007248 1.4e-75 287.0 242 67.8
Gohir.D06G210100 Gossypium hirsutum HOM05D005621 ORTHO05D007248 1.8e-75 286.6 180 79.4
MSTRG.14706 Avicennia marina HOM05D005621 ORTHO05D007248 3.1e-75 285.8 246 66.3
Gorai.010G256400 Gossypium raimondii HOM05D005621 ORTHO05D007248 3.1e-75 285.8 220 70.5
CsaV3_6G050190 Cucumis sativus L. HOM05D005621 ORTHO05D007248 4.1e-75 285.4 247 65.2
Sed0019345 Sechium edule HOM05D005621 ORTHO05D007248 7.0e-75 284.6 244 63.1
Lsat_1_v5_gn_7_21701 Lactuca sativa HOM05D005621 ORTHO05D007248 9.1e-75 284.3 247 65.2
Nitab4.5_0005745g0010 Nicotiana tabacum HOM05D005621 ORTHO05D007248 1.6e-74 283.5 245 65.3
Nitab4.5_0013984g0010 Nicotiana tabacum HOM05D005621 ORTHO05D007248 1.6e-74 283.5 245 65.7
Gohir.A06G211100 Gossypium hirsutum HOM05D005621 ORTHO05D007248 2.0e-74 283.1 220 70.0
Sabra04G0028500 Salix brachista HOM05D005621 ORTHO05D007248 3.5e-74 282.3 248 64.9
Peaxi162Scf02261g00011 Petunia axillaris HOM05D005621 ORTHO05D007248 5.9e-74 281.6 242 66.5
Thecc.06G184600 Theobroma cacao HOM05D005621 ORTHO05D007248 5.9e-74 281.6 199 74.9
Cc02_g13570 Coffea canephora HOM05D005621 ORTHO05D007248 7.7e-74 281.2 254 64.2
Glyma.07G198500 Glycine max HOM05D005621 ORTHO05D007248 7.7e-74 281.2 243 65.0
Oeu029361.1 Olea europaea HOM05D005621 ORTHO05D007248 1.7e-73 280.0 245 65.3
PGSC0003DMG400029704 Solanum tuberosum HOM05D005621 ORTHO05D007248 1.7e-73 280.0 243 64.6
DCAR_004062 Daucus carota HOM05D005621 ORTHO05D007248 2.9e-73 279.3 256 66.0
Glyma.13G177900 Glycine max HOM05D005621 ORTHO05D007248 2.9e-73 279.3 237 65.8
HanXRQChr09g0253381 Helianthus annuus HOM05D005621 ORTHO05D007248 2.9e-73 279.3 189 76.2
Cpa.g.sc464.3 Carica papaya HOM05D005621 ORTHO05D007248 3.8e-73 278.9 240 65.4
Lj4g0015429 Lotus japonicus HOM05D005621 ORTHO05D007248 6.5e-73 278.1 244 64.8
COL.COLO4_31445 Corchorus olitorius HOM05D005621 ORTHO05D007248 8.5e-73 277.7 173 79.8
Sopen02g022830 Solanum pennellii HOM05D005621 ORTHO05D007248 1.1e-72 277.3 243 63.8
Prupe.4G049400 Prunus persica HOM05D005621 ORTHO05D007248 1.9e-72 276.6 245 66.1
Haze_06422 Corylus avellana HOM05D005621 ORTHO05D007248 2.5e-72 276.2 251 64.5
Eucgr.D00609 Eucalyptus grandis HOM05D005621 ORTHO05D007248 3.2e-72 275.8 243 64.6
QL05p041319 Quercus lobata HOM05D005621 ORTHO05D007248 3.2e-72 275.8 249 63.1
Solyc02g077990.3 Solanum lycopersicum HOM05D005621 ORTHO05D007248 3.2e-72 275.8 243 63.8
Gohir.D05G163500 Gossypium hirsutum HOM05D005621 ORTHO05D007248 9.4e-72 274.2 243 65.0
FvH4_3g08970 Fragaria vesca HOM05D005621 ORTHO05D007248 1.6e-71 273.5 248 65.7
Gohir.A05G160800 Gossypium hirsutum HOM05D005621 ORTHO05D007248 2.1e-71 273.1 243 64.2
CAN.G529.17 Capsicum annuum HOM05D005621 ORTHO05D007248 3.6e-71 272.3 242 63.6
TWI63G1165 Tripterygium wilfordii HOM05D005621 ORTHO05D007248 3.6e-71 272.3 239 62.8
MD00G1115700 Malus domestica HOM05D005621 ORTHO05D007248 6.1e-71 271.6 245 65.7
MD10G1292500 Malus domestica HOM05D005621 ORTHO05D007248 6.1e-71 271.6 245 64.9
Gorai.009G168600 Gossypium raimondii HOM05D005621 ORTHO05D007248 8.0e-71 271.2 243 64.2
THA.LOC104814219 Tarenaya hassleriana HOM05D005621 ORTHO05D007248 1.4e-70 270.4 245 64.5
ATR0217G013 Amborella trichopoda HOM05D005621 ORTHO05D007248 3.0e-70 269.2 240 66.2
Nitab4.5_0012909g0010 Nicotiana tabacum HOM05D005621 ORTHO05D007248 3.0e-70 269.2 201 71.1
ECA236G3692 Erigeron canadensis HOM05D005621 ORTHO05D007248 4.0e-70 268.9 215 67.9
PGR004G2009 Punica granatum HOM05D005621 ORTHO05D007248 6.8e-70 268.1 258 61.6
VMungo0251G0522 Vigna mungo HOM05D005621 ORTHO05D007248 5.7e-69 265.0 247 61.5
SalBow7G0434 Salvia bowleyana HOM05D005621 ORTHO05D007248 7.5e-69 264.6 247 61.9
SalBow7G3926 Salvia bowleyana HOM05D005621 ORTHO05D007248 7.5e-69 264.6 247 61.9
Sc05g0007560 Simmondsia chinensis HOM05D005621 ORTHO05D007248 1.3e-68 263.8 251 61.8
Atru.chr10.1848 Acer truncatum HOM05D005621 ORTHO05D007248 2.2e-68 263.1 200 72.0
Ah.09g237450 Amaranthus hybridus HOM05D005621 ORTHO05D007248 2.2e-68 263.1 243 64.2
Migut.H01481 Erythranthe guttata HOM05D005621 ORTHO05D007248 2.2e-68 263.1 245 60.8
AL4G29560 Arabidopsis lyrata HOM05D005621 ORTHO05D007248 2.8e-68 262.7 244 61.9
Cfa000493 Carpinus fangiana HOM05D005621 ORTHO05D007248 4.9e-68 261.9 241 62.7
AUR62014837 Chenopodium quinoa HOM05D005621 ORTHO05D007248 4.9e-68 261.9 246 61.8
FAN11G2270 Fragaria x ananassa HOM05D005621 ORTHO05D007248 4.9e-68 261.9 248 62.5
Phvul.002G229700 Phaseolus vulgaris HOM05D005621 ORTHO05D007248 4.9e-68 261.9 247 60.3
SGA_v2.0_scaffold109G31092 Striga asiatica HOM05D005621 ORTHO05D007248 4.9e-68 261.9 245 62.9
Nitab4.5_0007329g0010 Nicotiana tabacum HOM05D005621 ORTHO05D007248 7.0e-67 258.1 236 63.6
Ca_18557_v3 Cicer arietinum L. HOM05D005621 ORTHO05D007248 9.2e-67 257.7 174 74.1
AUR62017033 Chenopodium quinoa HOM05D005621 ORTHO05D007248 1.2e-66 257.3 246 60.6
Medtr4g088615 Medicago truncatula HOM05D005621 ORTHO05D007248 1.2e-66 257.3 248 62.9
Ah.14g089540 Amaranthus hybridus HOM05D005621 ORTHO05D007248 3.5e-66 255.8 241 61.8
FAN25G0915 Fragaria x ananassa HOM05D005621 ORTHO05D007248 5.9e-66 255.0 170 78.2
Lj2A290T34 Lonicera japonica HOM05D005621 ORTHO05D007248 7.7e-66 254.6 172 75.6
Carub.0004s1547 Capsella rubella HOM05D005621 ORTHO05D007248 1.0e-65 254.2 244 60.2
FAN21G0060 Fragaria x ananassa HOM05D005621 ORTHO05D007248 1.3e-65 253.8 239 64.4
AT2G33800 Arabidopsis thaliana HOM05D005621 ORTHO05D007248 1.7e-65 253.4 244 59.8
FAN16G3294 Fragaria x ananassa HOM05D005621 ORTHO05D007248 2.9e-65 252.7 236 64.8
Aa31sc652G50 Aethionema arabicum HOM05D005621 ORTHO05D007248 3.8e-65 252.3 217 65.0
Aa31sc652G80 Aethionema arabicum HOM05D005621 ORTHO05D007248 3.8e-65 252.3 217 65.0
Potri.011G053900 Populus trichocarpa HOM05D005621 ORTHO05D007248 3.8e-65 252.3 245 62.0
EL10Ac8g20402 Beta vulgaris HOM05D005621 ORTHO05D007248 6.6e-65 251.5 246 60.6
Hund21218 Selenicereus undatus HOM05D005621 ORTHO05D007248 1.1e-64 250.8 211 64.0
BraA04t18105Z Brassica rapa HOM05D005621 ORTHO05D007248 7.3e-64 248.1 248 58.5
RcHm_v2.0_Chr5g0008741 Rosa chinensis HOM05D005621 ORTHO05D007248 1.6e-63 246.9 245 60.8
Duzib235G0013 Durio zibethinus HOM05D005621 ORTHO05D007248 2.8e-63 246.1 201 68.2
A04p26030 Brassica napus HOM05D005621 ORTHO05D007248 1.4e-62 243.8 248 58.5
BolC4t27812H Brassica oleracea HOM05D005621 ORTHO05D007248 3.0e-62 242.7 248 57.7
Ciclev10016057m.g Citrus clementina HOM05D005621 ORTHO05D007248 5.2e-62 241.9 248 60.5
C04p63370 Brassica napus HOM05D005621 ORTHO05D007248 6.8e-62 241.5 248 57.7
Sp4g16190 Schrenkiella parvula HOM05D005621 ORTHO05D007248 1.5e-61 240.4 247 58.7
CARHR127910 Cardamine hirsuta HOM05D005621 ORTHO05D007248 4.4e-61 238.8 247 59.5
unitig_0.g964 Utricularia gibba HOM05D005621 ORTHO05D007248 2.2e-60 236.5 190 65.3
TPR.G16335 Trifolium pratense HOM05D005621 ORTHO05D007248 3.2e-59 232.6 234 55.6
Psat7g115360 Pisum sativum HOM05D005621 ORTHO05D007248 3.9e-57 225.7 247 55.1
Actinidia16560 Actinidia chinensis HOM05D005621 ORTHO05D007248 8.3e-52 208.0 247 53.4
Os03g0452300 Oryza sativa ssp. japonica HOM05D005621 ORTHO05D007248 3.7e-44 182.6 250 48.0
Rhsim02G0132300 Rhododendron simsii HOM05D005621 ORTHO05D007248 8.3e-44 181.4 262 46.2
vmacro15918 Vaccinium macrocarpon HOM05D005621 ORTHO05D007248 1.2e-42 177.6 284 46.5
Zm00001eb043240 Zea mays HOM05D005621 ORTHO05D007248 8.6e-41 171.4 164 56.1
BcaC02g07768 Brassica carinata HOM05D005621 ORTHO05D007248 2.5e-40 169.9 117 76.1
Pp3c7_18380 Physcomitrium patens HOM05D005621 ORTHO05D007248 5.8e-37 158.7 137 62.0
FAN24G2187 Fragaria x ananassa HOM05D005621 ORTHO05D007248 8.4e-36 154.8 102 79.4
Pp3c1_5050 Physcomitrium patens HOM05D005621 ORTHO05D007248 8.4e-36 154.8 143 60.1
FvH4_2g34180 Fragaria vesca HOM05D005621 ORTHO05D007248 1.9e-35 153.7 97 83.5
Pp3c11_10680 Physcomitrium patens HOM05D005621 ORTHO05D007248 3.2e-35 152.9 134 59.0
SEGI_11788 Sequoiadendron giganteum HOM05D005621 ORTHO05D007248 9.2e-35 151.4 142 56.3
Mapoly0008s0189 Marchantia polymorpha HOM05D005621 ORTHO05D007248 4.6e-34 149.1 155 54.8
CBR_g50385 Chara braunii HOM05D005621 ORTHO05D007248 1.5e-32 144.1 149 53.7
AL4G11520 Arabidopsis lyrata HOM05D005621 ORTHO05D007248 3.6e-31 139.4 84 83.3
Cc02_g13560 Coffea canephora HOM05D005621 ORTHO05D007248 3.1e-30 136.3 135 54.1
AagrBONN_evm.TU.Sc2ySwM_344.1949 Anthoceros agrestis HOM05D005621 ORTHO05D007248 1.5e-29 134.0 157 51.6
HPP92_014187 Vanilla planifolia HOM05D005621 ORTHO05D007248 9.0e-22 108.2 162 48.8
VMungo0647G2378 Vigna mungo HOM05D005621 ORTHO05D007248 5.1e-17 92.4 84 53.6
PRCOL_00000384 Prasinoderma coloniale HOM05D005621 ORTHO05D007248 1.9e-16 90.5 86 52.3
MCO06G207 Micromonas commoda HOM05D005621 ORTHO05D007248 2.5e-16 90.1 77 58.4
Cfa000499 Carpinus fangiana HOM05D000007 ORTHO05D000039 3.4e-13 79.7 171 40.4
Cre16.g659950 Chlamydomonas reinhardtii HOM05D005621 ORTHO05D007248 1.7e-12 77.4 86 39.5
FvH4_1g06340 Fragaria vesca HOM05D005621 ORTHO05D045558 6.2e-07 58.9 62 50.0
MCO11G545 Micromonas commoda HOM05D004851 ORTHO05D006091 8.1e-07 58.5 81 38.3
Pp3c8_16260 Physcomitrium patens HOM05D004851 ORTHO05D006091 1.1e-06 58.2 87 40.2
Mapoly0098s0036 Marchantia polymorpha HOM05D004851 ORTHO05D006091 9.0e-06 55.1 101 34.7


User provided reference genes

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