Gene: Sopen02g022830

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g022830
  • Transcript Identifier Sopen02g022830.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 46367914-46371174 : negative

Gene Family Information

  • ID HOM05D005621
  • #Genes/#Species 137/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g022830.1

Descriptions

  • Description 30S ribosomal protein S5, chloroplast precursor - Spinacia oleracea (Spinach), Ribosomal protein S5 family protein | FUNCTIONS IN: structural constituent of ribosome, RNA binding | INVOLVED IN: response to cadmium ion, response to cold, translation | LOCATED IN: in 8 components | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, N-terminal , Double-stranded RNA-binding-like , Ribosomal protein S5, C-terminal , Ribosomal protein S5, bacterial-type , Ribosomal protein S5 domain 2-type fold , Ribosomal protein S5 , Ribosomal protein S5 domain 2-type fold, subgroup , Ribosomal protein S5, N-terminal, conserved site | BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032544
ISO
PLAZA Integrative Orthologyplastid translation AT2G33800
GO:0009955
ISO
PLAZA Integrative Orthologyadaxial/abaxial pattern specification AT2G33800
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT2G33800
GO:1901259
ISO
PLAZA Integrative Orthologychloroplast rRNA processing AT2G33800
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT2G33800
GO:0006412
IEA
InterProtranslation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G33800
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT2G33800
GO:0009535
ISO
PLAZA Integrative Orthologychloroplast thylakoid membrane AT2G33800
GO:0009579
ISO
PLAZA Integrative Orthologythylakoid AT2G33800
GO:0009534
ISO
PLAZA Integrative Orthologychloroplast thylakoid AT2G33800
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G33800
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT2G33800
GO:0015935
IEA
InterProsmall ribosomal subunit
GO:0005840
IEA
InterProribosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR005324 Ribosomal protein S5, C-terminal
IPR005712 Ribosomal protein S5, bacterial-type
IPR000851 Ribosomal protein S5
IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
IPR013810 Ribosomal protein S5, N-terminal
Mapman id Description
17.7.2.2.5 Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psRPS5