Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 5.9e-222 773.9 380 100.0
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 2.0e-185 652.5 382 81.9
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 1.8e-178 629.4 380 80.5
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 1.8e-178 629.4 317 94.0
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 6.4e-176 620.9 383 80.9
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 8.3e-176 620.5 358 83.2
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 7.0e-175 617.5 384 80.2
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 7.8e-174 614.0 391 78.5
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 1.0e-173 613.6 394 79.2
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 2.3e-173 612.5 336 88.1
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 3.9e-173 611.7 353 82.2
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 3.9e-173 611.7 331 87.3
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 6.6e-173 610.9 365 80.5
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 6.6e-173 610.9 376 79.8
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 8.6e-173 610.5 329 87.8
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 2.5e-172 609.0 373 78.6
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 3.3e-172 608.6 381 80.6
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 3.3e-172 608.6 351 83.2
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 4.3e-172 608.2 365 79.7
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 7.3e-172 607.4 374 78.6
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 7.3e-172 607.4 365 80.3
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 7.3e-172 607.4 366 79.5
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.1e-171 605.9 364 78.8
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 6.2e-171 604.4 375 77.3
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 6.2e-171 604.4 382 77.5
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 6.2e-171 604.4 373 77.7
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 8.0e-171 604.0 373 78.3
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 1.1e-170 603.6 379 77.6
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 1.1e-170 603.6 383 78.6
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 1.4e-170 603.2 374 79.7
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 2.3e-170 602.4 389 77.9
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 5.2e-170 601.3 373 78.0
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 5.2e-170 601.3 375 80.0
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 5.2e-170 601.3 329 86.3
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 8.9e-170 600.5 390 76.7
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 8.9e-170 600.5 375 80.0
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 8.9e-170 600.5 389 77.4
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 1.2e-169 600.1 376 79.5
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.5e-169 599.7 370 80.3
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 2.0e-169 599.4 354 80.8
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 2.6e-169 599.0 385 78.7
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.6e-169 599.0 375 79.2
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.6e-169 599.0 375 79.2
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 2.6e-169 599.0 392 76.3
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 3.4e-169 598.6 336 82.4
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 3.4e-169 598.6 403 76.7
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 4.4e-169 598.2 354 80.5
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 4.4e-169 598.2 354 80.5
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 4.4e-169 598.2 389 77.1
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 4.4e-169 598.2 376 77.7
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 7.5e-169 597.4 374 79.7
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 7.5e-169 597.4 326 85.6
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 9.8e-169 597.0 378 77.2
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 1.3e-168 596.7 379 77.8
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 1.3e-168 596.7 321 87.2
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 2.9e-168 595.5 372 77.2
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 2.9e-168 595.5 383 77.3
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 2.9e-168 595.5 382 77.5
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 3.7e-168 595.1 379 78.1
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 4.9e-168 594.7 383 77.0
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 6.4e-168 594.3 381 77.7
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 1.1e-167 593.6 377 78.5
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 1.1e-167 593.6 381 78.2
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 1.9e-167 592.8 382 77.5
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 2.4e-167 592.4 384 77.6
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 3.2e-167 592.0 376 76.6
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 3.2e-167 592.0 325 86.5
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 5.4e-167 591.3 373 77.7
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 1.2e-166 590.1 376 77.4
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 1.6e-166 589.7 324 85.5
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 2.0e-166 589.3 373 78.6
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 2.0e-166 589.3 355 80.6
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.7e-166 589.0 377 77.2
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 2.7e-166 589.0 372 78.8
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 3.5e-166 588.6 378 77.2
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 4.6e-166 588.2 379 78.6
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 4.6e-166 588.2 323 86.1
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 6.0e-166 587.8 381 75.1
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 6.0e-166 587.8 385 75.8
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 7.8e-166 587.4 377 76.7
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 1.0e-165 587.0 377 77.2
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 1.7e-165 586.3 449 68.2
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 2.3e-165 585.9 388 75.3
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 3.0e-165 585.5 377 76.9
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 3.9e-165 585.1 377 76.4
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 3.9e-165 585.1 377 78.2
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 5.0e-165 584.7 372 78.8
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 6.6e-165 584.3 376 77.1
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 8.6e-165 583.9 381 75.6
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 1.1e-164 583.6 380 77.1
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 2.5e-164 582.4 362 79.6
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 5.6e-164 581.3 409 75.1
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 2.1e-163 579.3 317 86.4
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 3.6e-163 578.6 381 74.0
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 3.6e-163 578.6 394 74.4
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 5.2e-162 574.7 371 76.5
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 5.2e-162 574.7 385 73.5
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 5.2e-162 574.7 377 74.0
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 1.2e-161 573.5 386 73.8
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 3.4e-161 572.0 371 76.3
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 5.8e-161 571.2 410 71.5
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.7e-160 569.7 367 76.8
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 2.2e-160 569.3 405 73.3
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 1.9e-159 566.2 353 77.3
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 3.2e-159 565.5 291 90.4
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 2.7e-158 562.4 381 74.3
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 8.6e-157 557.4 389 71.7
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.1e-156 557.0 373 73.5
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 7.3e-156 554.3 292 87.0
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 5.2e-154 548.1 284 87.7
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 5.6e-148 528.1 330 74.5
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 4.7e-147 525.0 480 57.9
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.4e-146 522.7 326 75.2
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 6.9e-146 521.2 376 70.5
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 2.2e-144 516.2 390 68.2
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 3.8e-144 515.4 535 54.6
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 8.4e-144 514.2 533 53.1
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 1.9e-143 513.1 390 69.2
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 3.2e-143 512.3 348 69.8
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 6.0e-142 508.1 333 71.8
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 1.6e-139 500.0 286 79.7
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.5e-132 476.9 319 72.1
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 9.9e-129 464.2 365 63.8
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 8.7e-125 451.1 226 88.5
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 9.0e-122 441.0 293 68.6
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.4e-119 433.7 383 62.9
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 2.1e-118 429.9 328 62.2
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 6.7e-117 424.9 292 73.6
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 1.3e-112 410.6 252 79.8
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.7e-104 383.6 219 82.6
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 2.0e-100 370.2 325 56.9
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 1.8e-98 363.6 322 56.2
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 5.3e-98 362.1 265 70.9
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 3.6e-94 349.4 190 83.2
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.1e-90 334.7 206 75.7
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 1.5e-84 317.4 238 71.0
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 4.4e-84 315.8 271 55.0
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 5.0e-64 249.2 295 44.4
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.2e-62 244.6 319 40.4
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.2e-62 244.6 307 42.0
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 3.1e-61 240.0 346 38.2
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.3e-59 234.6 302 41.4
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 3.9e-56 223.0 295 41.4
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 2.5e-55 220.3 179 64.8
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 2.1e-54 217.2 110 90.0
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 2.8e-54 216.9 298 41.6
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.3e-48 198.0 114 85.1
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 3.6e-46 189.9 231 41.6
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 4.4e-44 183.0 155 61.3
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 9.0e-29 132.1 92 71.7
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 1.6e-25 121.3 56 91.1
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 6.6e-24 115.9 157 45.2
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 4.9e-19 99.8 62 80.6
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 2.4e-18 97.4 77 63.6
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 7.9e-17 92.4 93 57.0
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 2.1e-14 84.3 49 73.5
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 2.4e-13 80.9 173 39.3
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 5.8e-12 76.3 33 90.9
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 1.6e-09 68.2 34 76.5
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 5.7e-07 59.7 31 77.4
HanXRQChr08g0215991 Helianthus annuus HOM05D033391 ORTHO05D220840 2.8e-06 57.4 27 85.2
HanXRQChr11g0343191 Helianthus annuus HOM05D033391 ORTHO05D220967 4.8e-06 56.6 25 92.0


User provided reference genes

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