Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0293 Trochodendron aralioides HOM05D001752 ORTHO05D013127 6.4e-135 484.2 260 100.0
TAR627G1108 Trochodendron aralioides HOM05D001752 ORTHO05D005237 8.0e-29 131.7 84 85.7
TAR629G1663 Trochodendron aralioides HOM05D001752 ORTHO05D005237 1.5e-27 127.5 85 82.4
Nn4g26511 Nelumbo nucifera HOM05D001752 ORTHO05D005237 3.4e-27 126.3 98 69.4
CSS0015991 Camellia sinensis var. sinensis HOM05D001752 ORTHO05D005237 4.4e-27 125.9 99 67.7
CSS0035593 Camellia sinensis var. sinensis HOM05D001752 ORTHO05D005237 4.9e-26 122.5 104 65.4
Hma1.2p1_0713F.1_g207770 Hydrangea macrophylla HOM05D001752 ORTHO05D005237 6.3e-26 122.1 89 77.5
MSTRG.14994 Avicennia marina HOM05D001752 ORTHO05D005237 8.3e-26 121.7 81 77.8
Nn3g20662 Nelumbo nucifera HOM05D001752 ORTHO05D005237 1.1e-25 121.3 85 74.1
Sabra16G0250700 Salix brachista HOM05D001752 ORTHO05D005237 1.1e-25 121.3 89 75.3
QL08p027904 Quercus lobata HOM05D001752 ORTHO05D005237 1.8e-25 120.6 94 68.1
Cpa.g.sc1272.2 Carica papaya HOM05D001752 ORTHO05D005237 2.4e-25 120.2 81 77.8
Dinv26692 Davidia involucrata HOM05D001752 ORTHO05D005237 2.4e-25 120.2 81 79.0
Prupe.4G153300 Prunus persica HOM05D001752 ORTHO05D005237 3.1e-25 119.8 91 71.4
Sp5g33600 Schrenkiella parvula HOM05D001752 ORTHO05D005237 3.1e-25 119.8 89 71.9
Gohir.A13G151300 Gossypium hirsutum HOM05D001752 ORTHO05D005237 4.1e-25 119.4 75 82.7
Actinidia07515 Actinidia chinensis HOM05D001752 ORTHO05D005237 5.4e-25 119.0 81 77.8
Dinv13346 Davidia involucrata HOM05D001752 ORTHO05D005237 5.4e-25 119.0 81 79.0
Gohir.D13G155500 Gossypium hirsutum HOM05D001752 ORTHO05D005237 5.4e-25 119.0 75 82.7
Gorai.013G176100 Gossypium raimondii HOM05D001752 ORTHO05D005237 5.4e-25 119.0 75 82.7
RcHm_v2.0_Chr5g0028851 Rosa chinensis HOM05D001752 ORTHO05D005237 5.4e-25 119.0 89 73.0
Thhalv10018616m.g Eutrema salsugineum HOM05D001752 ORTHO05D005237 7.0e-25 118.6 89 69.7
Oeu025324.1 Olea europaea HOM05D001752 ORTHO05D005237 7.0e-25 118.6 89 71.9
COL.COLO4_17445 Corchorus olitorius HOM05D001752 ORTHO05D005237 9.2e-25 118.2 75 82.7
MD11G1273800 Malus domestica HOM05D001752 ORTHO05D005237 9.2e-25 118.2 87 71.3
Actinidia12617 Actinidia chinensis HOM05D001752 ORTHO05D005237 1.2e-24 117.9 81 76.5
CSS0031554 Camellia sinensis var. sinensis HOM05D001752 ORTHO05D005237 1.2e-24 117.9 81 76.5
THA.LOC104813987 Tarenaya hassleriana HOM05D001752 ORTHO05D005237 1.2e-24 117.9 89 70.8
FvH4_3g17330 Fragaria vesca HOM05D001752 ORTHO05D005237 1.6e-24 117.5 89 71.9
FAN11G0153 Fragaria x ananassa HOM05D001752 ORTHO05D005237 1.6e-24 117.5 89 71.9
FAN16G0271 Fragaria x ananassa HOM05D001752 ORTHO05D005237 1.6e-24 117.5 89 71.9
FAN25G2993 Fragaria x ananassa HOM05D001752 ORTHO05D005237 1.6e-24 117.5 89 71.9
MD03G1252200 Malus domestica HOM05D001752 ORTHO05D005237 1.6e-24 117.5 89 69.7
Rhsim06G0187500 Rhododendron simsii HOM05D001752 ORTHO05D005237 1.6e-24 117.5 81 77.8
MSTRG.6698 Avicennia marina HOM05D001752 ORTHO05D005237 2.0e-24 117.1 109 61.5
A07p43780 Brassica napus HOM05D001752 ORTHO05D005237 2.0e-24 117.1 88 71.6
C06p52420 Brassica napus HOM05D001752 ORTHO05D005237 2.0e-24 117.1 88 72.7
BraA07t31886Z Brassica rapa HOM05D001752 ORTHO05D005237 2.0e-24 117.1 88 71.6
Duzib187G0679 Durio zibethinus HOM05D001752 ORTHO05D005237 2.0e-24 117.1 75 81.3
GSVIVG01014066001 Vitis vinifera HOM05D001752 ORTHO05D005237 2.0e-24 117.1 75 84.0
Ciclev10020312m.g Citrus clementina HOM05D001752 ORTHO05D005237 2.7e-24 116.7 75 80.0
CARHR072000 Cardamine hirsuta HOM05D001752 ORTHO05D005237 3.5e-24 116.3 89 68.5
CARHR017580 Cardamine hirsuta HOM05D001752 ORTHO05D005237 4.5e-24 115.9 89 69.7
Potri.001G380500 Populus trichocarpa HOM05D001752 ORTHO05D005237 4.5e-24 115.9 89 71.9
Thecc.07G140500 Theobroma cacao HOM05D001752 ORTHO05D005237 4.5e-24 115.9 75 81.3
Cc05_g10510 Coffea canephora HOM05D001752 ORTHO05D005237 7.8e-24 115.2 81 75.3
Lj8A144T69 Lonicera japonica HOM05D001752 ORTHO05D005237 7.8e-24 115.2 81 77.8
arahy.Tifrunner.gnm1.ann1.1MPM44 Arachis hypogaea HOM05D001752 ORTHO05D005237 1.0e-23 114.8 75 82.7
arahy.Tifrunner.gnm1.ann1.XQ2AST Arachis hypogaea HOM05D001752 ORTHO05D005237 1.0e-23 114.8 75 82.7
BcaC08g47421 Brassica carinata HOM05D001752 ORTHO05D005237 1.3e-23 114.4 88 71.6
BolC6t40261H Brassica oleracea HOM05D001752 ORTHO05D005237 1.3e-23 114.4 88 71.6
Ca_03415_v3 Cicer arietinum L. HOM05D001752 ORTHO05D005237 1.7e-23 114.0 81 76.5
Ca_29740_v3 Cicer arietinum L. HOM05D001752 ORTHO05D005237 1.7e-23 114.0 81 76.5
THA.LOC104812299 Tarenaya hassleriana HOM05D001752 ORTHO05D005237 1.7e-23 114.0 89 69.7
AL2G38910 Arabidopsis lyrata HOM05D001752 ORTHO05D005237 2.3e-23 113.6 89 68.5
AUR62039570 Chenopodium quinoa HOM05D001752 ORTHO05D005237 2.3e-23 113.6 83 72.3
Lj1A821G46 Lonicera japonica HOM05D001752 ORTHO05D005237 2.3e-23 113.6 105 61.9
Aa31LG7G1880 Aethionema arabicum HOM05D001752 ORTHO05D005237 2.9e-23 113.2 89 68.5
Carub.0001s1677 Capsella rubella HOM05D001752 ORTHO05D005237 2.9e-23 113.2 115 58.3
Eucgr.F03219 Eucalyptus grandis HOM05D001752 ORTHO05D005237 2.9e-23 113.2 81 72.8
Peaxi162Scf00111g01144 Petunia axillaris HOM05D001752 ORTHO05D005237 2.9e-23 113.2 76 77.6
AT1G17050 Arabidopsis thaliana HOM05D001752 ORTHO05D005237 3.8e-23 112.8 89 68.5
Glyma.13G262200 Glycine max HOM05D001752 ORTHO05D005237 5.0e-23 112.5 81 76.5
PGSC0003DMG400007081 Solanum tuberosum HOM05D001752 ORTHO05D005237 5.0e-23 112.5 75 80.0
MSTRG.14259 Avicennia marina HOM05D001752 ORTHO05D005237 6.6e-23 112.1 91 68.1
BcaC05g25678 Brassica carinata HOM05D001752 ORTHO05D005237 6.6e-23 112.1 89 67.4
A06p12950 Brassica napus HOM05D001752 ORTHO05D005237 6.6e-23 112.1 89 67.4
C05p15370 Brassica napus HOM05D001752 ORTHO05D005237 6.6e-23 112.1 89 67.4
BolC5t30243H Brassica oleracea HOM05D001752 ORTHO05D005237 6.6e-23 112.1 89 67.4
BraA06t24454Z Brassica rapa HOM05D001752 ORTHO05D005237 6.6e-23 112.1 89 67.4
Carub.0002s2536 Capsella rubella HOM05D001752 ORTHO05D005237 6.6e-23 112.1 89 67.4
CiPaw.12G046600 Carya illinoinensis HOM05D001752 ORTHO05D005237 6.6e-23 112.1 110 59.1
Sp1g15170 Schrenkiella parvula HOM05D001752 ORTHO05D005237 6.6e-23 112.1 89 67.4
PSO541G0989 Papaver somniferum HOM05D001752 ORTHO05D005237 8.6e-23 111.7 77 79.2
PGR031G0641 Punica granatum HOM05D001752 ORTHO05D005237 8.6e-23 111.7 81 75.3
CANSAT56G3507 Cannabis sativa HOM05D001752 ORTHO05D005237 1.1e-22 111.3 83 74.7
Migut.H02035 Erythranthe guttata HOM05D001752 ORTHO05D005237 1.1e-22 111.3 81 74.1
Thhalv10007715m.g Eutrema salsugineum HOM05D001752 ORTHO05D005237 1.1e-22 111.3 89 66.3
Lalb_Chr20g0109041 Lupinus albus HOM05D001752 ORTHO05D005237 1.1e-22 111.3 75 78.7
TPR.G6839 Trifolium pratense HOM05D001752 ORTHO05D005237 1.1e-22 111.3 75 80.0
Cfa019489 Carpinus fangiana HOM05D001752 ORTHO05D005237 1.5e-22 110.9 81 72.8
Aqoxy1G01776 Aquilegia oxysepala HOM05D001752 ORTHO05D005237 1.9e-22 110.5 84 71.4
AL7G51010 Arabidopsis lyrata HOM05D001752 ORTHO05D005237 1.9e-22 110.5 81 74.1
Manes.15G100400 Manihot esculenta HOM05D001752 ORTHO05D005237 1.9e-22 110.5 70 84.3
Os12g0271700 Oryza sativa ssp. japonica HOM05D001752 ORTHO05D005237 2.5e-22 110.2 71 81.7
AT1G78510 Arabidopsis thaliana HOM05D001752 ORTHO05D005237 3.3e-22 109.8 89 66.3
Glyma.15G243100 Glycine max HOM05D001752 ORTHO05D005237 3.3e-22 109.8 81 74.1
Lalb_Chr01g0016221 Lupinus albus HOM05D001752 ORTHO05D005237 3.3e-22 109.8 75 77.3
Medtr2g072470 Medicago truncatula HOM05D001752 ORTHO05D005237 3.3e-22 109.8 81 74.1
Hund10378 Selenicereus undatus HOM05D001752 ORTHO05D005237 3.3e-22 109.8 69 81.2
Sc03g0010800 Simmondsia chinensis HOM05D001752 ORTHO05D005237 3.3e-22 109.8 98 63.3
Solyc07g061990.3 Solanum lycopersicum HOM05D001752 ORTHO05D005237 3.3e-22 109.8 75 78.7
Sopen07g030260 Solanum pennellii HOM05D001752 ORTHO05D005237 3.3e-22 109.8 75 78.7
TWI39G0829 Tripterygium wilfordii HOM05D001752 ORTHO05D005237 3.3e-22 109.8 83 71.1
EL10Ac4g08456 Beta vulgaris HOM05D001752 ORTHO05D005237 5.6e-22 109.0 80 72.5
BcaB02g06681 Brassica carinata HOM05D001752 ORTHO05D005237 5.6e-22 109.0 89 65.2
CAN.G375.68 Capsicum annuum HOM05D001752 ORTHO05D005237 5.6e-22 109.0 75 77.3
Lj3g0019503 Lotus japonicus HOM05D001752 ORTHO05D005237 5.6e-22 109.0 80 77.5
Nitab4.5_0007036g0010 Nicotiana tabacum HOM05D001752 ORTHO05D005237 5.6e-22 109.0 77 74.0
Os05g0582300 Oryza sativa ssp. japonica HOM05D001752 ORTHO05D005237 5.6e-22 109.0 71 80.3
THA.LOC104822586 Tarenaya hassleriana HOM05D001752 ORTHO05D005237 5.6e-22 109.0 77 70.1
Psat1g006600 Pisum sativum HOM05D001752 ORTHO05D005237 7.3e-22 108.6 81 72.8
DCAR_017581 Daucus carota HOM05D001752 ORTHO05D005237 2.1e-21 107.1 80 72.5
SGA_v2.0_scaffold4G02146 Striga asiatica HOM05D001752 ORTHO05D005237 2.1e-21 107.1 88 63.6
unitig_46.g18306 Utricularia gibba HOM05D001752 ORTHO05D005237 2.1e-21 107.1 106 61.3
SEGI_06571 Sequoiadendron giganteum HOM05D001752 ORTHO05D005237 2.8e-21 106.7 67 80.6
unitig_37.g12550 Utricularia gibba HOM05D001752 ORTHO05D005237 2.8e-21 106.7 81 71.6
Migut.M00682 Erythranthe guttata HOM05D001752 ORTHO05D005237 3.6e-21 106.3 83 69.9
Phvul.005G064200 Phaseolus vulgaris HOM05D001752 ORTHO05D005237 3.6e-21 106.3 85 70.6
SalBow7G0098 Salvia bowleyana HOM05D001752 ORTHO05D005237 4.7e-21 105.9 81 71.6
SalBow7G0347 Salvia bowleyana HOM05D001752 ORTHO05D005237 4.7e-21 105.9 81 71.6
VMungo1080G1543 Vigna mungo HOM05D001752 ORTHO05D005237 8.0e-21 105.1 81 70.4
PSO675G8508 Papaver somniferum HOM05D001752 ORTHO05D005237 1.0e-20 104.8 71 80.3
Zm00001eb004050 Zea mays HOM05D001752 ORTHO05D005237 1.0e-20 104.8 70 77.1
Sed0021402 Sechium edule HOM05D001752 ORTHO05D005237 1.8e-20 104.0 75 70.7
ClCG07G010380 Citrullus lanatus HOM05D001752 ORTHO05D005237 3.0e-20 103.2 74 73.0
SGA_v2.0_scaffold130G34245 Striga asiatica HOM05D001752 ORTHO05D005237 3.0e-20 103.2 81 66.7
ATR1153G023 Amborella trichopoda HOM05D001752 ORTHO05D005237 4.0e-20 102.8 80 68.8
vmacro11993 Vaccinium macrocarpon HOM05D001752 ORTHO05D005237 6.8e-20 102.1 99 61.6
HanXRQChr10g0305631 Helianthus annuus HOM05D001752 ORTHO05D005237 1.2e-19 101.3 68 76.5
ECA234G2248 Erigeron canadensis HOM05D001752 ORTHO05D005237 1.5e-19 100.9 70 75.7
THA.LOC104810419 Tarenaya hassleriana HOM05D001752 ORTHO05D005237 1.5e-19 100.9 75 69.3
Zm00001eb297120 Zea mays HOM05D001752 ORTHO05D005237 1.5e-19 100.9 84 66.7
CDE02G0912 Ceratophyllum demersum HOM05D001752 ORTHO05D005237 2.0e-19 100.5 75 66.7
HanXRQChr12g0373361 Helianthus annuus HOM05D001752 ORTHO05D005237 2.0e-19 100.5 75 72.0
CDE09G0513 Ceratophyllum demersum HOM05D001752 ORTHO05D005237 3.4e-19 99.8 75 66.7
MELO3C016140.2 Cucumis melo HOM05D001752 ORTHO05D005237 3.4e-19 99.8 70 74.3
CsaV3_4G007960 Cucumis sativus L. HOM05D001752 ORTHO05D005237 3.4e-19 99.8 70 74.3
Potri.011G101200 Populus trichocarpa HOM05D001752 ORTHO05D005237 3.4e-19 99.8 89 61.8
HPP92_010049 Vanilla planifolia HOM05D001752 ORTHO05D005237 3.4e-19 99.8 102 55.9
MBI10_g03528_MAGBIO Magnolia biondii HOM05D001752 ORTHO05D005237 5.8e-19 99.0 92 65.2
Sed0013121 Sechium edule HOM05D001752 ORTHO05D005237 5.8e-19 99.0 67 76.1
Potri.011G099500 Populus trichocarpa HOM05D001752 ORTHO05D005237 7.5e-19 98.6 89 61.8
Potri.011G101301 Populus trichocarpa HOM05D001752 ORTHO05D005237 1.3e-18 97.8 105 55.2
AUR62019685 Chenopodium quinoa HOM05D001752 ORTHO05D005237 8.3e-18 95.1 95 57.9
Lj1A821T48 Lonicera japonica HOM05D001752 ORTHO05D013127 5.4e-17 92.4 69 71.0
SMO201G0139 Selaginella moellendorffii HOM05D001752 ORTHO05D005237 1.2e-16 91.3 65 69.2
Mapoly0058s0036 Marchantia polymorpha HOM05D001752 ORTHO05D005237 2.0e-16 90.5 69 65.2
Oeu050685.1 Olea europaea HOM05D001752 ORTHO05D005237 2.7e-16 90.1 129 46.5
Haze_08466 Corylus avellana HOM05D001752 ORTHO05D005237 1.3e-15 87.8 122 47.5
Pp3c16_16550 Physcomitrium patens HOM05D001752 ORTHO05D005237 1.3e-15 87.8 67 62.7
Pp3c27_1880 Physcomitrium patens HOM05D001752 ORTHO05D005237 1.3e-15 87.8 65 64.6
BcaC09g49151 Brassica carinata HOM05D001852 ORTHO05D013127 1.7e-15 87.4 75 61.3
BolC1t04168H Brassica oleracea HOM05D001852 ORTHO05D013127 1.7e-15 87.4 75 61.3
Phvul.002G108500 Phaseolus vulgaris HOM05D001752 ORTHO05D013127 1.5e-14 84.3 85 58.8
C07p22800 Brassica napus HOM05D001852 ORTHO05D013127 1.6e-13 80.9 69 60.9
BcaC02g10252 Brassica carinata HOM05D001852 ORTHO05D013127 2.1e-13 80.5 75 57.3
C04p31080 Brassica napus HOM05D001852 ORTHO05D013127 2.1e-13 80.5 75 57.3
BolC4t24645H Brassica oleracea HOM05D001852 ORTHO05D013127 2.1e-13 80.5 75 57.3
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 4.0e-12 76.3 48 83.3
Cre13.g565650 Chlamydomonas reinhardtii HOM05D001752 ORTHO05D005237 1.7e-10 70.9 83 44.6
MCO05G629 Micromonas commoda HOM05D001752 ORTHO05D005237 2.2e-10 70.5 63 49.2
DCAR_019630 Daucus carota HOM05D001752 ORTHO05D005237 3.7e-10 69.7 44 79.5
CBR_g22317 Chara braunii HOM05D001752 ORTHO05D005237 1.9e-09 67.4 71 54.9
AagrBONN_evm.TU.Sc2ySwM_228.153 Anthoceros agrestis HOM05D001752 ORTHO05D005237 9.2e-09 65.1 63 52.4
PRCOL_00004938 Prasinoderma coloniale HOM05D001752 ORTHO05D005237 9.2e-09 65.1 61 54.1
FAN21G3597 Fragaria x ananassa HOM05D001752 ORTHO05D005237 1.0e-07 61.6 39 79.5


User provided reference genes

Program Settings