Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0033 Trochodendron aralioides HOM05D003481 ORTHO05D004001 0.0e+00 1526.5 803 100.0
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 0.0e+00 1312.4 771 90.0
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 0.0e+00 1147.1 770 78.7
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 0.0e+00 1126.3 770 77.9
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 0.0e+00 1113.6 758 77.3
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 0.0e+00 1105.1 805 74.2
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 0.0e+00 1102.0 770 75.8
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 0.0e+00 1091.6 771 76.1
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 5.5e-312 1074.7 801 71.8
Prupe.6G356900 Prunus persica HOM05D003481 ORTHO05D004001 7.1e-310 1067.0 760 74.5
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 6.0e-309 1063.9 771 73.5
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 5.1e-308 1060.8 771 73.7
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 1.9e-307 1058.9 771 73.2
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 5.6e-307 1057.4 771 74.2
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 3.1e-305 1051.6 798 72.8
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 5.3e-305 1050.8 774 72.6
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 1.3e-303 1046.2 769 73.0
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 1.9e-302 1042.3 802 70.9
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 1.9e-302 1042.3 798 71.8
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 1.2e-301 1039.6 800 69.0
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 8.7e-300 1033.5 773 72.2
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 1.1e-299 1033.1 801 70.5
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 2.5e-299 1031.9 771 72.0
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 5.6e-299 1030.8 795 69.7
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 9.6e-299 1030.0 769 71.3
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 1.8e-297 1025.8 803 70.5
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 2.6e-296 1021.9 781 71.7
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 2.6e-296 1021.9 772 71.6
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 1.7e-295 1019.2 772 70.6
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 2.2e-295 1018.8 795 69.3
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 2.9e-295 1018.5 770 71.6
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 4.9e-295 1017.7 796 70.1
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 1.1e-294 1016.5 770 71.2
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 3.2e-294 1015.0 801 69.8
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 5.5e-294 1014.2 798 70.7
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 1.2e-293 1013.1 772 70.3
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 1.6e-293 1012.7 798 70.7
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 3.0e-292 1008.4 762 72.0
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 5.1e-292 1007.7 798 70.2
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 3.3e-291 1005.0 769 71.1
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 7.4e-291 1003.8 766 70.2
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 1.3e-290 1003.0 761 71.0
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 2.1e-290 1002.3 795 69.3
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 2.8e-290 1001.9 769 70.1
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 2.6e-288 995.3 770 70.9
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 4.5e-288 994.6 795 68.2
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 1.4e-286 989.6 805 66.3
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 1.2e-285 986.5 757 71.1
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 1.8e-284 982.6 869 64.9
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 3.0e-284 981.9 770 69.4
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 1.5e-283 979.5 773 70.5
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 7.4e-283 977.2 776 69.5
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 1.3e-282 976.5 770 70.5
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 2.8e-282 975.3 904 60.8
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 1.2e-280 969.9 839 65.0
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 7.6e-280 967.2 769 67.2
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.3e-279 966.5 747 70.8
Solyc02g030110.2 Solanum lycopersicum HOM05D003481 ORTHO05D004001 2.2e-279 965.7 758 67.8
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 2.5e-278 962.2 769 66.8
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 9.3e-278 960.3 742 69.8
Lj1A1155G48 Lonicera japonica HOM05D003481 ORTHO05D004001 1.0e-276 956.8 677 76.4
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 6.7e-276 954.1 758 67.3
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 1.3e-274 949.9 798 66.8
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 6.9e-273 944.1 772 67.4
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 2.0e-272 942.6 769 65.8
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 2.0e-272 942.6 845 62.5
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 1.9e-270 936.0 769 66.2
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 1.9e-270 936.0 759 66.3
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 7.2e-270 934.1 813 64.3
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 1.0e-268 930.2 769 64.8
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 5.1e-268 927.9 815 63.8
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 9.7e-267 923.7 800 63.6
ATR1132G011 Amborella trichopoda HOM05D003481 ORTHO05D004001 1.8e-265 919.5 761 66.5
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 5.3e-265 917.9 769 65.0
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 3.4e-264 915.2 699 71.0
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 2.1e-261 906.0 769 64.8
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 1.4e-260 903.3 795 62.3
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 6.7e-260 901.0 853 59.7
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 7.4e-259 897.5 741 65.2
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 1.3e-258 896.7 798 62.5
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 2.8e-258 895.6 760 63.2
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 2.4e-257 892.5 797 61.5
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 5.3e-257 891.3 760 64.6
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 1.6e-256 889.8 758 63.6
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 2.0e-256 889.4 758 63.5
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 2.0e-256 889.4 795 61.9
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 7.7e-256 887.5 795 61.5
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 1.7e-255 886.3 755 63.6
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 8.5e-255 884.0 797 61.1
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 8.5e-255 884.0 795 60.8
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 1.1e-254 883.6 794 61.1
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 1.1e-254 883.6 796 61.4
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 1.5e-254 883.2 758 63.1
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 4.2e-254 881.7 794 61.1
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 4.2e-254 881.7 794 61.1
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 7.2e-254 880.9 795 61.5
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 7.2e-254 880.9 796 61.6
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 3.6e-253 878.6 797 60.0
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 4.0e-252 875.2 770 62.6
Peaxi162Scf00267g00817 Petunia axillaris HOM05D003481 ORTHO05D004001 6.7e-252 874.4 783 62.7
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 7.0e-249 864.4 759 62.3
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 2.9e-247 859.0 759 61.8
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 6.1e-245 851.3 760 61.1
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 1.4e-244 850.1 821 57.9
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 1.2e-243 847.0 807 60.3
Nitab4.5_0000378g0100 Nicotiana tabacum HOM05D003481 ORTHO05D004001 9.8e-243 844.0 760 62.0
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 1.7e-242 843.2 758 60.7
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 4.8e-242 841.6 814 57.6
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 4.5e-240 835.1 759 61.4
arahy.Tifrunner.gnm1.ann1.0SF8RD Arachis hypogaea HOM05D003481 ORTHO05D004001 1.0e-236 823.9 669 68.5
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 1.6e-216 756.9 873 52.1
Manes.03G069500 Manihot esculenta HOM05D003481 ORTHO05D004001 5.4e-201 705.3 481 77.5
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 7.3e-198 694.9 783 51.0
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 3.5e-192 676.0 794 49.5
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 1.4e-185 654.1 761 50.5
Haze_05982 Corylus avellana HOM05D003481 ORTHO05D004001 5.3e-156 555.8 483 65.6
SEGI_29135 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 6.7e-151 538.9 520 58.5
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 2.5e-145 520.4 724 44.3
Sabra16G0301200 Salix brachista HOM05D003481 ORTHO05D004001 1.7e-125 454.5 399 63.9
MBI19_g43313_MAGBIO Magnolia biondii HOM05D003481 ORTHO05D004001 1.6e-112 411.4 409 61.9
AagrBONN_evm.TU.Sc2ySwM_117.2303 Anthoceros agrestis HOM05D003481 ORTHO05D004001 3.3e-105 387.1 602 42.7
Sabra16G0299600 Salix brachista HOM05D003481 ORTHO05D004001 6.4e-85 319.7 276 65.2
Actinidia33646 Actinidia chinensis HOM05D003481 ORTHO05D004001 1.3e-74 285.4 198 75.3
CSS0048234 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 7.6e-70 269.6 178 77.0
CSS0035493 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 2.2e-69 268.1 237 62.4
RcHm_v2.0_Chr7g0240301 Rosa chinensis HOM05D003481 ORTHO05D004001 1.9e-65 255.0 481 40.1
PRCOL_00001035 Prasinoderma coloniale HOM05D003481 ORTHO05D004001 9.3e-60 236.1 758 28.5
CBR_g66144 Chara braunii HOM05D003481 ORTHO05D004001 4.6e-59 233.8 291 48.8
Nitab4.5_0001298g0070 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.3e-58 232.3 225 54.7
Nitab4.5_0025882g0010 Nicotiana tabacum HOM05D003481 ORTHO05D004001 5.1e-58 230.3 189 66.1
CBR_g45268 Chara braunii HOM05D003481 ORTHO05D004001 2.9e-53 214.5 427 37.5
SHI31589 Sapria himalayana HOM05D003481 ORTHO05D004001 1.0e-50 206.1 232 53.0
Os04g0212200 Oryza sativa ssp. japonica HOM05D003481 ORTHO05D004001 6.7e-50 203.4 173 62.4
Actinidia29308 Actinidia chinensis HOM05D003481 ORTHO05D004001 1.9e-49 201.8 216 56.0
SEGI_21626 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 4.8e-48 197.2 132 77.3
arahy.Tifrunner.gnm1.ann1.16LSI5 Arachis hypogaea HOM05D003481 ORTHO05D004001 4.2e-44 184.1 290 45.2
Manes.03G070216 Manihot esculenta HOM05D003481 ORTHO05D004001 6.1e-43 180.3 120 76.7
Nitab4.5_0001298g0060 Nicotiana tabacum HOM05D003481 ORTHO05D004001 8.2e-40 169.9 170 60.0
Sabra16G0299500 Salix brachista HOM05D003481 ORTHO05D000002 4.1e-39 167.5 173 53.8
SHI31590 Sapria himalayana HOM05D003481 ORTHO05D004001 1.1e-36 159.5 196 51.5
MCO09G025 Micromonas commoda HOM05D003481 ORTHO05D004001 1.9e-36 158.7 644 26.1
Cre02.g087551 Chlamydomonas reinhardtii HOM05D003481 ORTHO05D004001 9.4e-36 156.4 805 24.7
CSS0015411 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 1.2e-30 139.4 101 72.3
SHI31588 Sapria himalayana HOM05D003481 ORTHO05D004001 2.6e-30 138.3 87 83.9
Lj1A1155T51 Lonicera japonica HOM05D003481 ORTHO05D004001 2.9e-29 134.8 96 69.8
Aqoxy3G00998 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 7.2e-28 130.2 117 63.2
Cfa023843 Carpinus fangiana HOM05D003481 ORTHO05D004001 4.7e-27 127.5 486 25.3
Haze_05980 Corylus avellana HOM05D003481 ORTHO05D004001 5.7e-25 120.6 169 46.2
arahy.Tifrunner.gnm1.ann1.DYC2U6 Arachis hypogaea HOM05D003481 ORTHO05D004001 4.8e-24 117.5 125 56.8
Actinidia29309 Actinidia chinensis HOM05D003481 ORTHO05D004001 9.1e-23 113.2 83 66.3
Oeu018810.1 Olea europaea HOM05D003481 ORTHO05D004001 1.3e-21 109.4 114 52.6
Lsat_1_v5_gn_2_79640 Lactuca sativa HOM05D003481 ORTHO05D004001 1.7e-21 109.0 193 39.9
Aa31sc55G50 Aethionema arabicum HOM05D003481 ORTHO05D004001 6.7e-18 97.1 76 69.7
Lsat_1_v5_gn_3_92020 Lactuca sativa HOM05D002302 ORTHO05D002728 2.0e-17 95.5 100 53.0
Lsat_1_v5_gn_0_25080 Lactuca sativa HOM05D003481 ORTHO05D004001 2.6e-17 95.1 219 36.5
SHI31587 Sapria himalayana HOM05D003481 ORTHO05D004001 5.7e-17 94.0 55 78.2
SHI31592 Sapria himalayana HOM05D003481 ORTHO05D004001 3.7e-16 91.3 84 57.1
SEGI_05968 Sequoiadendron giganteum HOM05D003481 ORTHO05D011771 6.3e-16 90.5 63 65.1
Oeu001605.1 Olea europaea HOM05D003481 ORTHO05D004001 4.1e-15 87.8 160 38.8
arahy.Tifrunner.gnm1.ann1.SFPI36 Arachis hypogaea HOM05D003481 ORTHO05D004001 5.3e-15 87.4 59 76.3
vmacro19556 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 3.5e-14 84.7 74 58.1
CBR_g56099 Chara braunii HOM05D003481 ORTHO05D004001 1.0e-13 83.2 99 41.4
Lsat_1_v5_gn_0_13620 Lactuca sativa HOM05D002610 ORTHO05D002926 2.9e-13 81.6 76 56.6
arahy.Tifrunner.gnm1.ann1.R9RUHP Arachis hypogaea HOM05D003481 ORTHO05D004001 1.9e-12 79.0 59 62.7
vmacro19694 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 5.5e-12 77.4 65 61.5
vmacro16031 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 7.2e-12 77.0 169 33.1
vmacro19693 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 1.2e-11 76.3 55 69.1
arahy.Tifrunner.gnm1.ann1.A6QARX Arachis hypogaea HOM05D003481 ORTHO05D004001 3.6e-11 74.7 67 58.2
arahy.Tifrunner.gnm1.ann1.40643C Arachis hypogaea HOM05D003481 ORTHO05D004001 1.0e-10 73.2 60 63.3
HanXRQChr17g0556701 Helianthus annuus HOM05D003481 ORTHO05D004001 8.8e-10 70.1 70 54.3
Lsat_1_v5_gn_9_116960 Lactuca sativa HOM05D003481 ORTHO05D004001 4.4e-09 67.8 52 71.2
Nitab4.5_0003773g0070 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.2e-06 59.7 44 61.4


User provided reference genes

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