Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.0e-155 552.4 280 100.0
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 1.5e-142 509.6 274 92.3
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 2.0e-142 509.2 275 91.6
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 2.6e-142 508.8 280 90.7
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 1.3e-141 506.5 284 90.1
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 2.9e-141 505.4 273 91.9
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 6.4e-141 504.2 280 89.3
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 8.3e-141 503.8 289 87.9
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 1.1e-140 503.4 281 88.3
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.4e-140 503.1 287 88.5
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 2.4e-140 502.3 298 86.2
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 5.4e-140 501.1 287 88.5
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 9.2e-140 500.4 273 90.8
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 1.6e-139 499.6 298 85.2
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 1.6e-139 499.6 285 88.4
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 1.6e-139 499.6 285 88.4
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 2.1e-139 499.2 283 88.7
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 2.1e-139 499.2 283 88.7
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 4.6e-139 498.0 287 87.5
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 2.3e-138 495.7 296 84.5
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 3.0e-138 495.4 274 90.5
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 3.0e-138 495.4 274 91.2
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 3.9e-138 495.0 291 86.9
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.1e-137 493.4 276 89.9
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 1.5e-137 493.0 301 84.1
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.9e-137 492.7 275 89.5
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 1.9e-137 492.7 291 86.3
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 3.3e-137 491.9 302 83.4
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.2e-136 490.0 276 89.1
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 1.6e-136 489.6 290 85.9
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 2.1e-136 489.2 273 89.0
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 8.1e-136 487.3 273 88.6
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 8.1e-136 487.3 289 84.8
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.4e-135 486.5 303 82.5
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 4.0e-135 485.0 287 84.7
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 1.5e-134 483.0 293 83.6
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 2.0e-134 482.6 274 87.2
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 4.4e-134 481.5 274 86.9
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 4.4e-134 481.5 278 85.6
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 5.8e-134 481.1 273 88.6
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 7.6e-134 480.7 267 89.5
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 7.6e-134 480.7 272 87.9
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.3e-133 479.9 278 86.0
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.9e-133 478.8 317 79.5
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 4.9e-133 478.0 278 84.9
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 4.9e-133 478.0 278 84.9
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 6.4e-133 477.6 298 82.2
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 8.4e-133 477.2 274 87.6
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.1e-132 476.9 322 78.3
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.1e-132 476.9 287 84.7
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 2.4e-132 475.7 281 84.0
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 9.2e-132 473.8 273 86.1
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 9.2e-132 473.8 273 86.1
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 9.2e-132 473.8 281 83.6
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 4.6e-131 471.5 297 81.8
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 7.8e-131 470.7 292 80.8
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 8.7e-130 467.2 278 83.8
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 1.5e-129 466.5 289 82.0
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 1.5e-129 466.5 282 83.3
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 1.9e-129 466.1 275 86.2
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 3.3e-129 465.3 321 75.4
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 7.3e-129 464.2 286 80.1
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 1.3e-128 463.4 278 85.3
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.3e-128 463.4 296 82.1
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 1.3e-128 463.4 287 81.2
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 2.8e-128 462.2 290 79.7
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 3.6e-128 461.8 274 83.6
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 3.6e-128 461.8 284 81.0
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 4.8e-128 461.5 277 81.2
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 8.1e-128 460.7 275 84.0
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 8.1e-128 460.7 280 84.6
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 1.8e-127 459.5 293 79.2
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 2.4e-127 459.1 280 81.1
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 5.3e-127 458.0 282 80.1
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 6.9e-127 457.6 304 79.3
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 6.9e-127 457.6 277 84.1
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 6.9e-127 457.6 277 84.1
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 1.2e-126 456.8 296 77.0
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 7.6e-126 454.1 291 78.4
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 7.6e-126 454.1 291 78.4
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 7.6e-126 454.1 292 77.7
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 1.3e-125 453.4 297 78.1
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 1.7e-125 453.0 282 81.2
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 2.2e-125 452.6 282 81.9
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 3.8e-125 451.8 292 78.1
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 2.4e-124 449.1 298 76.2
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 2.4e-124 449.1 284 81.3
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 3.2e-124 448.7 273 80.2
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 9.3e-124 447.2 281 78.6
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 3.5e-123 445.3 273 80.6
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 3.9e-122 441.8 289 78.9
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 5.1e-122 441.4 327 71.9
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 8.7e-122 440.7 334 71.6
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 2.5e-121 439.1 290 78.3
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 7.3e-121 437.6 323 72.8
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 1.6e-120 436.4 248 87.1
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.6e-120 436.4 294 76.2
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.6e-120 436.4 294 76.2
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 2.1e-120 436.0 282 76.6
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 3.6e-120 435.3 308 74.4
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 1.4e-119 433.3 278 77.3
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 5.3e-119 431.4 280 75.4
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 2.0e-118 429.5 309 71.8
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 2.0e-118 429.5 276 77.2
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.6e-118 429.1 269 75.5
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 7.9e-115 417.5 280 78.9
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 1.9e-113 412.9 233 88.8
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 1.2e-110 403.7 222 90.1
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 4.5e-110 401.7 205 100.0
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.1e-107 392.9 264 72.3
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 4.6e-107 391.7 224 86.6
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 6.5e-101 371.3 278 70.5
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 3.5e-99 365.5 275 70.2
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 6.1e-99 364.8 291 67.7
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.0e-98 364.0 293 67.2
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 6.9e-95 351.3 256 69.1
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.4e-94 349.0 244 70.1
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 5.5e-92 341.7 287 62.4
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 2.7e-91 339.3 282 63.1
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 4.6e-91 338.6 194 88.1
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.0e-90 337.4 288 61.8
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 1.8e-90 336.7 225 76.4
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.1e-89 334.0 264 65.9
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 2.2e-88 329.7 267 65.9
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 1.2e-86 323.9 303 59.1
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 2.6e-81 306.2 181 85.6
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 2.2e-80 303.1 190 80.0
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.7e-80 302.4 202 71.3
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 1.2e-78 297.4 271 59.0
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 3.3e-73 279.3 181 76.2
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 1.3e-69 267.3 246 63.4
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.0e-65 253.4 147 87.1
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 8.3e-64 248.1 190 66.3
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 6.8e-50 201.8 111 86.5
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.4e-47 194.1 108 89.8
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 3.2e-47 193.0 110 87.3
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 3.5e-46 189.5 116 83.6
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 3.1e-42 176.4 106 83.0
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 8.9e-42 174.9 110 79.1
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 3.7e-40 169.5 136 69.1
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.9e-39 167.2 268 38.8
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 1.0e-37 161.4 94 85.1
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.1e-36 157.9 95 85.3
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 1.4e-34 151.0 269 34.2
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 4.0e-34 149.4 83 85.5
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 3.2e-31 139.8 104 70.2
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.2e-30 137.9 266 35.0
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 7.8e-30 135.2 219 40.6
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 1.9e-28 130.6 247 34.4
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 6.2e-27 125.6 118 60.2
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 6.2e-27 125.6 118 60.2
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 1.1e-26 124.8 118 61.0
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 1.8e-26 124.0 105 65.7
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 1.8e-26 124.0 66 87.9
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 8.9e-26 121.7 118 58.5
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 8.9e-26 121.7 118 58.5
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 1.2e-25 121.3 118 59.3
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 1.3e-24 117.9 118 57.6
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 1.3e-24 117.9 118 58.5
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 5.1e-21 105.9 52 100.0
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 1.5e-20 104.4 155 40.6
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 2.5e-20 103.6 87 63.2
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 9.6e-20 101.7 155 41.3
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 1.8e-18 97.4 83 63.9
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 1.9e-15 87.4 53 79.2
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 1.7e-13 80.9 46 78.3


User provided reference genes

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