Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 8.7e-205 716.8 390 100.0
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.6e-134 483.4 303 86.8
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.6e-134 482.3 303 86.5
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 3.4e-124 449.1 338 75.1
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 8.4e-123 444.5 338 76.3
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 3.3e-119 432.6 311 77.5
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 2.8e-118 429.5 299 80.3
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 8.1e-118 427.9 340 73.8
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 1.2e-116 424.1 338 73.7
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.3e-115 420.6 338 73.4
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 2.2e-115 419.9 337 71.5
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 1.4e-114 417.2 338 72.8
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 1.4e-114 417.2 338 73.4
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 1.2e-113 414.1 297 74.1
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 2.7e-113 412.9 298 77.5
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 7.9e-113 411.4 293 78.2
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 1.7e-112 410.2 297 74.7
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.7e-112 410.2 337 71.2
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 3.0e-112 409.5 338 70.7
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 3.9e-112 409.1 313 74.8
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 5.1e-112 408.7 338 71.9
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 6.6e-112 408.3 299 73.9
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 6.6e-112 408.3 337 70.9
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 1.9e-111 406.8 337 71.2
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 2.5e-111 406.4 299 73.9
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 4.3e-111 405.6 337 70.0
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 2.8e-110 402.9 337 68.5
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 2.8e-110 402.9 313 73.2
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 6.2e-110 401.7 338 70.7
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 9.0e-109 397.9 318 72.6
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 1.2e-108 397.5 324 70.1
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 2.6e-108 396.4 296 73.3
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 2.6e-108 396.4 339 68.1
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 4.5e-108 395.6 338 68.9
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 4.5e-108 395.6 305 69.2
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 4.5e-108 395.6 306 70.6
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 4.5e-108 395.6 308 72.1
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 5.8e-108 395.2 300 73.0
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 1.7e-107 393.7 338 68.0
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 1.7e-107 393.7 342 69.0
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 3.8e-107 392.5 338 68.6
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 4.9e-107 392.1 341 70.4
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 8.4e-107 391.3 338 67.8
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 1.1e-106 391.0 338 69.2
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.1e-106 391.0 337 68.5
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 1.4e-106 390.6 341 70.1
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.9e-106 390.2 338 70.7
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 1.9e-106 390.2 337 69.1
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 4.2e-106 389.0 308 68.2
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 4.2e-106 389.0 337 69.1
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 4.2e-106 389.0 339 69.6
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 5.5e-106 388.7 341 68.3
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 2.1e-105 386.7 338 68.6
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.1e-105 386.7 339 69.3
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 3.5e-105 386.0 337 68.0
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 4.6e-105 385.6 338 69.5
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 4.6e-105 385.6 337 68.5
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 7.9e-105 384.8 338 67.5
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 1.0e-104 384.4 338 69.5
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 1.0e-104 384.4 338 68.0
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 1.0e-104 384.4 339 69.9
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.8e-104 383.6 339 68.7
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 2.3e-104 383.3 337 66.5
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 2.3e-104 383.3 300 71.0
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 2.3e-104 383.3 332 68.4
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 3.9e-104 382.5 338 65.4
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 5.1e-104 382.1 339 68.7
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 6.7e-104 381.7 338 67.5
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 1.5e-103 380.6 338 67.8
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 1.9e-103 380.2 338 67.5
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 5.6e-103 378.6 338 67.8
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 5.6e-103 378.6 338 67.2
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 7.4e-103 378.3 338 68.0
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 1.3e-102 377.5 338 67.2
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 1.3e-102 377.5 296 72.6
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.6e-102 377.1 339 68.1
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 2.1e-102 376.7 338 66.6
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 2.8e-102 376.3 340 65.6
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 3.7e-102 375.9 338 67.5
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 8.1e-102 374.8 308 67.9
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 1.4e-101 374.0 339 66.1
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 1.8e-101 373.6 338 67.5
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 1.8e-101 373.6 338 67.5
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.8e-101 373.6 342 68.1
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 2.4e-101 373.2 338 66.3
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 2.4e-101 373.2 338 66.3
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 2.4e-101 373.2 338 66.3
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 2.4e-101 373.2 297 69.7
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 3.1e-101 372.9 335 67.5
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 4.0e-101 372.5 338 65.4
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.2e-100 370.9 337 65.6
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 7.6e-100 368.2 338 65.7
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 1.3e-99 367.5 339 65.5
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 2.2e-99 366.7 304 68.8
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 1.1e-98 364.4 339 65.2
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 1.1e-98 364.4 290 72.1
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 1.4e-98 364.0 341 65.7
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 9.3e-98 361.3 300 69.0
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 9.3e-98 361.3 299 69.6
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 1.2e-97 360.9 335 64.2
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 1.3e-96 357.5 340 63.2
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 7.4e-95 351.7 339 59.3
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.3e-94 350.9 340 62.1
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 3.4e-92 342.8 336 61.6
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 7.6e-92 341.7 264 71.2
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 3.8e-91 339.3 340 61.8
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 3.8e-91 339.3 347 58.8
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 1.1e-90 337.8 338 62.4
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.1e-90 337.8 303 63.4
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 4.2e-90 335.9 347 59.7
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 1.2e-89 334.3 286 66.1
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 3.5e-89 332.8 309 62.8
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 9.0e-85 318.2 299 65.2
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.2e-84 317.8 255 64.7
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 1.5e-84 317.4 338 60.1
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 2.6e-84 316.6 335 60.6
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 7.7e-84 315.1 327 57.5
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 1.4e-82 310.8 225 71.1
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 3.2e-82 309.7 299 62.5
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 5.1e-80 302.4 338 57.1
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 9.7e-79 298.1 321 56.1
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.7e-75 287.3 187 79.1
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 2.2e-75 287.0 243 70.4
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 3.9e-72 276.2 322 54.3
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 3.1e-69 266.5 224 62.1
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 2.0e-68 263.8 228 62.3
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 5.0e-67 259.2 179 79.3
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 4.7e-65 252.7 209 64.6
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 1.7e-62 244.2 252 59.9
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 1.1e-61 241.5 303 46.5
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 6.1e-57 225.7 294 47.3
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 3.0e-56 223.4 177 67.8
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 3.4e-55 219.9 347 42.1
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 4.8e-54 216.1 313 46.3
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 7.7e-52 208.8 164 71.3
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 8.3e-46 188.7 136 72.8
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.4e-37 161.4 136 68.4
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 2.3e-35 154.1 126 66.7
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 2.3e-32 144.1 121 66.9
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 9.5e-26 122.1 313 34.8
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 2.3e-19 100.9 104 63.5
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 3.6e-17 93.6 79 68.4
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 6.2e-17 92.8 119 52.1
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 4.9e-14 83.2 78 60.3
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 4.9e-14 83.2 84 51.2
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 1.1e-13 82.0 339 32.4
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 4.6e-12 76.6 363 29.5
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 5.1e-11 73.2 51 72.5
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 8.6e-11 72.4 383 29.0
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 1.5e-10 71.6 53 69.8
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 5.6e-10 69.7 90 44.4


User provided reference genes

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