Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 0.0e+00 1090.5 562 100.0
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 2.7e-191 672.5 439 78.6
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 4.1e-187 658.7 495 69.7
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 1.5e-186 656.8 495 70.3
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 3.4e-186 655.6 482 72.0
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 2.9e-185 652.5 489 70.8
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 3.8e-185 652.1 494 69.4
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 5.0e-185 651.7 491 69.5
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 3.2e-184 649.0 489 70.8
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 7.2e-184 647.9 494 70.4
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 7.9e-183 644.4 498 68.9
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 7.9e-183 644.4 490 69.4
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 3.9e-182 642.1 493 69.6
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 3.3e-181 639.0 508 67.7
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 9.7e-181 637.5 484 69.8
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 2.8e-180 636.0 496 68.8
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 8.2e-180 634.4 484 70.0
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 1.1e-179 634.0 533 65.1
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 5.9e-178 628.2 495 68.7
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 7.7e-178 627.9 496 67.1
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 1.3e-177 627.1 494 68.0
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.2e-175 620.5 496 67.3
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 2.3e-174 616.3 479 68.7
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 3.0e-174 615.9 478 67.8
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 3.0e-174 615.9 496 66.9
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.6e-173 612.8 496 66.5
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 2.6e-173 612.8 494 67.2
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 4.4e-173 612.1 497 67.8
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 4.4e-173 612.1 465 70.3
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 1.3e-172 610.5 490 67.3
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 1.7e-172 610.1 465 69.2
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 2.2e-172 609.8 489 67.3
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 2.8e-172 609.4 483 68.3
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 3.7e-172 609.0 496 66.3
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 6.3e-172 608.2 480 68.1
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 1.4e-171 607.1 479 67.6
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 5.3e-171 605.1 483 68.1
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 9.1e-171 604.4 449 70.6
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 9.1e-171 604.4 480 67.5
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 1.2e-170 604.0 487 65.9
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 1.6e-170 603.6 463 68.9
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 2.6e-170 602.8 495 63.8
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 3.5e-170 602.4 496 64.5
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 3.5e-170 602.4 480 67.3
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 4.5e-170 602.1 499 65.5
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 4.5e-170 602.1 477 68.6
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 5.9e-170 601.7 481 67.6
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 1.3e-169 600.5 494 64.8
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 1.7e-169 600.1 478 67.4
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 2.9e-169 599.4 453 68.2
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 6.5e-169 598.2 497 64.8
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 8.5e-169 597.8 492 64.8
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 1.9e-168 596.7 458 67.9
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 1.9e-168 596.7 494 64.0
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 1.9e-168 596.7 496 63.7
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 1.6e-167 593.6 501 65.5
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 2.7e-167 592.8 496 63.1
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 2.7e-167 592.8 467 67.9
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 6.1e-167 591.7 493 66.1
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 6.1e-167 591.7 486 67.1
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 1.0e-166 590.9 490 65.7
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 8.8e-166 587.8 402 75.4
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 2.6e-165 586.3 488 66.0
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 2.6e-165 586.3 488 64.1
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 7.5e-165 584.7 489 64.0
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 7.5e-165 584.7 487 64.3
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 1.7e-164 583.6 522 61.5
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 2.8e-164 582.8 473 64.9
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 3.7e-164 582.4 491 64.0
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 4.8e-164 582.0 361 81.2
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 1.6e-162 577.0 466 65.9
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 2.0e-162 576.6 431 68.4
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 2.7e-162 576.2 476 65.3
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 5.9e-162 575.1 455 66.2
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 3.8e-161 572.4 488 63.3
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 6.5e-161 571.6 431 67.7
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 2.5e-160 569.7 450 66.2
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 1.6e-159 567.0 508 62.2
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 1.4e-158 563.9 479 64.3
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 1.2e-157 560.8 390 74.9
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 7.5e-157 558.1 414 70.3
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 1.7e-156 557.0 367 75.5
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 8.3e-156 554.7 456 64.5
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 9.1e-155 551.2 494 60.3
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 3.5e-154 549.3 503 59.6
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 2.9e-153 546.2 479 60.5
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 5.9e-146 521.9 531 55.7
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 2.3e-145 520.0 479 61.0
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 3.0e-145 519.6 484 61.0
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 2.8e-143 513.1 357 76.2
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 3.6e-143 512.7 490 57.3
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 6.2e-143 511.9 445 62.2
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 4.4e-141 505.8 400 64.2
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.4e-139 500.7 380 67.9
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 2.0e-138 496.9 434 60.4
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 9.2e-131 471.5 384 63.0
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 4.7e-127 459.1 497 52.7
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 2.6e-125 453.4 482 52.7
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 2.5e-120 436.8 390 58.2
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 3.8e-116 422.9 386 60.4
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 1.6e-114 417.5 331 64.0
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 7.8e-114 415.2 294 69.7
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 3.9e-113 412.9 401 57.1
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 1.8e-110 404.1 441 51.0
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 9.0e-110 401.7 525 47.2
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 3.2e-107 393.3 393 53.7
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 3.9e-105 386.3 457 48.8
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 6.0e-98 362.5 248 73.4
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 5.1e-97 359.4 400 47.8
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 2.8e-95 353.6 442 49.1
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 4.0e-94 349.7 269 68.8
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 6.0e-90 335.9 352 56.8
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 7.6e-85 318.9 339 52.5
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 1.6e-74 284.6 360 47.2
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 3.3e-72 276.9 264 56.4
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.4e-70 271.6 315 49.8
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 4.1e-62 243.4 461 36.2
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 7.0e-54 216.1 294 45.9
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 4.5e-53 213.4 530 30.4
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 1.1e-35 155.6 134 65.7
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 3.6e-34 150.6 129 62.8
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 2.3e-33 147.9 104 73.1
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 2.3e-28 131.3 177 48.6
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 7.3e-27 126.3 213 38.5
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 5.2e-25 120.2 114 57.0
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 1.3e-20 105.5 159 46.5
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 5.2e-17 93.6 277 30.3
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 9.8e-16 89.4 145 43.4
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 4.9e-15 87.0 89 50.6
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 5.4e-14 83.6 67 59.7
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.6e-13 82.0 95 46.3
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 1.0e-12 79.3 61 70.5
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 1.2e-10 72.4 62 56.5
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 1.7e-07 62.0 258 26.7
SMO197G0109 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.4e-06 58.2 155 28.4
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 4.1e-06 57.4 172 35.5


User provided reference genes

Program Settings