Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 7.0e-297 1023.5 630 100.0
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 5.3e-252 874.4 632 85.0
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 1.0e-239 833.6 632 84.2
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 7.7e-227 790.8 633 76.5
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 6.3e-213 744.6 546 80.2
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 2.3e-202 709.5 638 73.0
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 8.0e-200 701.0 643 69.4
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 8.9e-199 697.6 632 72.2
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 8.9e-199 697.6 639 69.5
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 1.2e-198 697.2 639 69.2
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 9.8e-198 694.1 648 70.8
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 4.1e-196 688.7 634 70.2
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 5.0e-194 681.8 639 70.3
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 4.7e-192 675.2 638 67.4
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 8.0e-192 674.5 647 67.2
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 5.2e-191 671.8 642 66.0
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 2.9e-189 666.0 642 67.6
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.7e-189 665.6 642 67.8
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 1.1e-188 664.1 637 68.3
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 4.1e-188 662.1 642 67.3
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 2.7e-187 659.4 632 62.8
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 1.7e-186 656.8 640 68.9
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 1.9e-185 653.3 693 63.5
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 3.6e-184 649.0 659 65.4
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 3.6e-184 649.0 641 64.9
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 1.4e-183 647.1 638 68.5
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 2.6e-182 642.9 657 66.7
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 2.9e-181 639.4 637 66.4
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 4.9e-181 638.6 502 75.5
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.6e-179 633.6 558 64.9
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 1.7e-178 630.2 635 65.2
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 1.7e-178 630.2 631 62.4
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 4.3e-177 625.5 635 62.2
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 7.3e-177 624.8 631 64.0
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 1.6e-176 623.6 508 71.5
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 3.6e-176 622.5 638 62.9
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 2.3e-175 619.8 634 62.6
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 4.0e-175 619.0 639 64.5
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 3.4e-174 615.9 513 71.2
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 1.3e-173 614.0 392 81.4
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 1.7e-173 613.6 638 62.7
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 2.4e-172 609.8 634 60.3
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 5.4e-172 608.6 631 66.1
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 7.1e-172 608.2 506 65.6
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 1.0e-170 604.4 518 72.6
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 1.0e-170 604.4 658 67.5
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 1.7e-170 603.6 638 66.0
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 3.0e-170 602.8 574 67.8
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 1.9e-169 600.1 518 72.2
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 2.5e-169 599.7 636 63.4
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 2.5e-169 599.7 633 66.2
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 5.6e-169 598.6 634 65.8
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 5.6e-169 598.6 629 59.0
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 4.7e-168 595.5 690 60.3
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 8.1e-168 594.7 647 63.2
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 4.0e-167 592.4 566 68.0
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 6.8e-167 591.7 553 62.6
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 1.2e-166 590.9 665 63.8
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 1.5e-166 590.5 566 62.4
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 2.9e-165 586.3 590 62.5
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 2.9e-165 586.3 514 71.0
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 5.4e-164 582.0 634 65.5
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 7.1e-164 581.6 636 59.7
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 2.7e-163 579.7 638 63.2
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 7.8e-163 578.2 577 64.8
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 1.3e-162 577.4 639 57.0
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 4.3e-161 572.4 637 56.0
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 4.8e-160 568.9 406 75.9
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 2.6e-158 563.1 643 62.7
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 1.7e-157 560.5 510 67.6
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 2.2e-157 560.1 440 69.8
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 2.9e-157 559.7 633 58.1
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 8.4e-157 558.1 425 72.9
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 2.4e-156 556.6 550 68.9
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 9.3e-156 554.7 481 71.3
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 1.3e-152 544.3 678 54.0
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 2.4e-151 540.0 630 59.5
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 4.0e-151 539.3 640 59.8
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 2.7e-147 526.6 512 67.6
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 1.3e-146 524.2 588 57.7
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 5.6e-145 518.8 475 68.4
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 9.6e-145 518.1 655 58.0
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 1.4e-143 514.2 701 52.2
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 5.3e-143 512.3 563 55.4
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 5.8e-142 508.8 475 68.0
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 2.2e-141 506.9 359 75.5
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 6.5e-141 505.4 433 67.0
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 1.3e-138 497.7 646 55.9
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 1.3e-136 491.1 493 60.2
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 3.1e-135 486.5 497 57.9
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.2e-134 484.6 370 78.1
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 7.6e-134 481.9 666 55.6
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 1.3e-133 481.1 599 53.6
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 6.5e-133 478.8 511 59.9
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 1.9e-132 477.2 540 60.2
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 4.1e-127 459.5 631 48.0
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 5.3e-127 459.1 642 57.9
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 9.0e-127 458.4 641 54.1
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 1.5e-126 457.6 639 55.6
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 3.4e-126 456.4 649 56.9
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 1.3e-125 454.5 642 57.6
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 1.1e-124 451.4 654 54.9
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 3.2e-124 449.9 648 54.2
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 4.3e-121 439.5 313 84.0
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 3.7e-120 436.4 640 55.5
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 2.0e-118 430.6 655 52.7
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 3.8e-117 426.4 514 53.9
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 8.5e-117 425.2 373 68.9
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.1e-116 424.9 373 68.6
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.1e-116 424.9 373 68.6
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.4e-116 424.5 373 68.9
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 4.2e-116 422.9 535 56.3
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 2.4e-111 407.1 531 56.9
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 4.1e-111 406.4 473 57.7
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 4.2e-108 396.4 474 57.0
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 8.0e-107 392.1 641 49.8
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 1.5e-97 361.3 343 58.0
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 9.8e-97 358.6 356 57.3
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 2.8e-96 357.1 337 58.2
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 1.0e-90 338.6 342 56.7
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 3.7e-80 303.5 552 45.5
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 1.8e-74 284.6 388 49.0
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 2.9e-72 277.3 477 43.0
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 6.4e-72 276.2 480 42.3
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 8.6e-69 265.8 397 43.1
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 7.3e-60 236.1 349 46.1
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 7.6e-57 226.1 269 62.8
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 1.2e-54 218.8 319 43.6
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.6e-51 208.4 337 49.6
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 9.9e-49 199.1 200 57.5
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 8.1e-43 179.5 136 72.8
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 9.9e-41 172.6 190 54.2
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 8.4e-40 169.5 103 77.7
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 6.0e-30 136.7 283 37.5
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 1.4e-26 125.6 456 35.1
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 1.2e-25 122.5 359 31.5
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 3.8e-24 117.5 132 58.3
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 1.0e-21 109.4 257 31.1
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 6.3e-19 100.1 90 56.7
MD06G1200900 Malus domestica HOM05D004839 ORTHO05D006012 2.4e-18 98.2 240 46.7
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 6.9e-18 96.7 61 80.3
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 3.2e-15 87.8 53 75.5
Cpa.g.c34487 Carica papaya HOM05D004839 ORTHO05D006012 2.3e-13 81.6 154 58.4
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 2.2e-11 75.1 41 82.9
Gorai.011G032300 Gossypium raimondii HOM05D004839 ORTHO05D006012 1.9e-07 62.0 138 50.0
FAN18G1977 Fragaria x ananassa HOM05D004839 ORTHO05D006012 2.5e-07 61.6 208 44.2
arahy.Tifrunner.gnm1.ann1.EPA5QP Arachis hypogaea HOM05D004839 ORTHO05D004485 7.2e-07 60.1 43 69.8
Actinidia21317 Actinidia chinensis HOM05D004839 ORTHO05D006012 1.2e-06 59.3 39 71.8


User provided reference genes

Program Settings