Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.6e-85 319.3 155 100.0
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 8.3e-74 280.4 155 85.2
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 1.4e-73 279.6 155 83.9
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 1.4e-73 279.6 155 84.5
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 1.6e-72 276.2 155 83.2
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 2.0e-72 275.8 155 83.2
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 3.5e-72 275.0 155 83.2
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 4.6e-72 274.6 155 82.6
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 7.8e-72 273.9 155 81.9
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.7e-71 272.7 145 89.7
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 2.3e-71 272.3 155 80.6
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 2.3e-71 272.3 155 80.6
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 3.9e-71 271.6 155 82.6
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 5.0e-71 271.2 154 81.8
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 6.6e-71 270.8 155 80.0
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.5e-70 269.6 155 81.9
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 5.6e-70 267.7 155 81.9
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 5.6e-70 267.7 155 78.7
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 9.5e-70 266.9 155 78.1
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 1.6e-69 266.2 155 77.4
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 2.1e-69 265.8 155 79.4
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 2.1e-69 265.8 155 80.6
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.8e-69 265.4 155 76.8
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 6.2e-69 264.2 155 77.4
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 1.1e-68 263.5 155 76.8
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 1.4e-68 263.1 155 76.8
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 1.4e-68 263.1 155 79.4
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.8e-68 262.7 155 78.1
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 2.3e-68 262.3 155 80.0
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 3.1e-68 261.9 155 78.7
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 5.2e-68 261.2 155 78.7
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 5.2e-68 261.2 155 78.1
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 6.8e-68 260.8 155 76.1
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 8.9e-68 260.4 155 78.1
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 1.5e-67 259.6 155 77.4
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 2.6e-67 258.8 155 78.7
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 4.4e-67 258.1 155 76.1
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 7.5e-67 257.3 155 75.5
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 9.8e-67 256.9 155 76.1
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 1.3e-66 256.5 155 75.5
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 3.7e-66 255.0 155 76.1
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 3.7e-66 255.0 155 74.8
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.4e-65 253.1 156 78.2
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.4e-65 253.1 156 78.2
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 1.4e-65 253.1 155 76.8
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 1.9e-65 252.7 155 75.5
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 4.1e-65 251.5 155 74.8
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 1.2e-64 250.0 155 74.2
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 1.2e-64 250.0 155 72.9
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 1.6e-64 249.6 155 73.5
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 2.7e-64 248.8 155 74.8
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 4.6e-64 248.1 155 73.5
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 4.6e-64 248.1 155 74.2
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 6.0e-64 247.7 155 75.5
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 6.0e-64 247.7 174 67.8
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 7.8e-64 247.3 155 72.9
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 1.0e-63 246.9 155 72.9
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 3.0e-63 245.4 152 75.0
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 5.1e-63 244.6 155 73.5
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 1.9e-62 242.7 155 72.9
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 3.3e-62 241.9 155 70.3
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.3e-62 241.9 155 71.6
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.3e-62 241.9 155 71.6
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 9.5e-62 240.4 155 71.0
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 9.5e-62 240.4 155 71.6
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 1.2e-61 240.0 153 73.9
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 1.2e-61 240.0 155 72.9
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.6e-61 239.6 155 71.0
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.1e-61 239.2 155 71.0
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 2.8e-61 238.8 155 71.6
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 3.6e-61 238.4 155 71.0
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 3.6e-61 238.4 155 71.6
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.6e-61 238.4 155 71.0
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 4.7e-61 238.0 155 71.0
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 6.2e-61 237.7 155 71.0
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 1.8e-60 236.1 155 71.6
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 3.1e-60 235.3 155 71.0
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 5.2e-60 234.6 155 69.7
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 8.9e-60 233.8 155 70.3
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 1.5e-59 233.0 155 69.7
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 2.0e-59 232.6 214 57.5
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 2.0e-59 232.6 152 72.4
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 2.6e-59 232.3 152 71.7
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 3.4e-59 231.9 145 73.8
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 7.5e-59 230.7 155 67.7
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 1.3e-58 229.9 155 67.7
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 2.2e-58 229.2 155 68.4
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 4.9e-58 228.0 144 72.2
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.9e-58 228.0 150 73.3
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 4.9e-58 228.0 151 70.2
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 4.9e-58 228.0 155 70.3
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 1.1e-57 226.9 154 67.5
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 7.1e-57 224.2 153 69.3
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 1.2e-56 223.4 147 70.1
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.6e-56 223.0 150 72.7
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 1.6e-56 223.0 147 71.4
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 3.5e-56 221.9 156 67.9
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 3.5e-56 221.9 131 77.9
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 2.3e-55 219.2 156 67.3
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 3.0e-55 218.8 156 67.3
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 1.1e-54 216.9 152 69.1
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 1.9e-54 216.1 146 72.6
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 2.5e-54 215.7 127 78.0
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 2.5e-54 215.7 127 78.0
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 4.3e-54 214.9 156 66.0
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 7.3e-54 214.2 156 65.4
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 2.4e-52 209.1 155 65.2
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 6.8e-52 207.6 155 65.2
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 2.6e-51 205.7 188 55.9
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 9.9e-51 203.8 148 64.9
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 2.2e-50 202.6 162 61.7
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 2.9e-50 202.2 156 61.5
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.1e-49 200.3 152 61.2
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 2.7e-48 195.7 154 59.1
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 3.5e-48 195.3 154 58.4
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 4.6e-48 194.9 154 59.1
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 6.0e-48 194.5 154 59.1
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.0e-47 193.7 114 85.1
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 2.3e-47 192.6 153 58.2
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 2.1e-45 186.0 128 66.4
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 2.4e-44 182.6 153 56.9
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 3.1e-44 182.2 146 61.0
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 3.5e-40 168.7 99 82.8
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 1.3e-39 166.8 144 54.9
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 5.1e-39 164.9 103 73.8
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 3.6e-37 158.7 148 56.1
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 3.6e-37 158.7 91 81.3
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 5.3e-36 154.8 106 63.2
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 6.9e-36 154.5 106 64.2
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.0e-35 152.9 104 65.4
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 1.4e-33 146.7 109 65.1
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 1.0e-31 140.6 83 78.3
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 8.7e-31 137.5 148 45.9
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 2.0e-27 126.3 128 49.2
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 2.0e-27 126.3 152 47.4
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 3.1e-20 102.4 130 46.2
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 5.3e-20 101.7 143 39.2
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.5e-19 100.1 68 67.6
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.5e-19 98.6 61 72.1
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.5e-19 98.6 61 72.1
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 5.5e-17 91.7 68 63.2
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 3.5e-16 89.0 50 80.0
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 1.1e-14 84.0 129 34.9
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 1.3e-10 70.5 118 33.9
Hund09752 Selenicereus undatus HOM05D005446 ORTHO05D006597 2.0e-06 56.6 40 60.0


User provided reference genes

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