Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 0.0e+00 1326.6 709 100.0
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 3.8e-150 536.2 687 52.8
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 1.1e-115 421.8 736 44.8
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 4.6e-111 406.4 624 46.8
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 5.8e-98 362.8 734 39.9
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 9.3e-96 355.5 717 40.3
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 1.8e-94 351.3 714 39.2
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 1.3e-92 345.1 625 44.2
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 4.8e-92 343.2 730 39.3
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 2.6e-90 337.4 732 37.7
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 8.4e-89 332.4 748 38.9
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 1.2e-87 328.6 754 39.7
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 1.9e-85 321.2 608 41.6
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 5.7e-85 319.7 719 37.3
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 1.8e-78 298.1 817 36.1
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 1.9e-77 294.7 741 36.7
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 1.3e-73 282.0 390 51.3
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 3.8e-73 280.4 610 38.2
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 2.7e-71 274.2 716 36.0
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 3.6e-71 273.9 714 36.7
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 1.1e-69 268.9 761 33.9
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 1.3e-68 265.4 562 38.8
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 5.3e-67 260.0 719 36.0
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 1.2e-66 258.8 501 39.7
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.5e-66 258.5 432 44.4
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 5.9e-66 256.5 432 43.3
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 1.0e-65 255.8 733 35.9
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 1.0e-65 255.8 725 34.5
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.7e-65 255.0 430 42.8
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 1.7e-65 255.0 715 34.5
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 2.9e-65 254.2 757 35.1
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 1.1e-64 252.3 724 36.2
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 3.2e-64 250.8 711 34.2
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 3.6e-63 247.3 434 43.1
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 1.4e-62 245.4 710 34.2
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 2.0e-61 241.5 539 38.8
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 2.6e-61 241.1 741 36.6
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 3.3e-61 240.7 716 33.9
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 5.7e-61 240.0 391 46.8
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 1.7e-60 238.4 724 33.3
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 1.7e-60 238.4 708 35.2
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 3.7e-60 237.3 717 34.2
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 4.8e-60 236.9 423 43.7
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 4.8e-60 236.9 708 35.2
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 1.4e-59 235.3 437 43.7
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 1.4e-59 235.3 719 33.2
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 5.9e-58 229.9 425 44.5
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 5.0e-57 226.9 379 45.6
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 5.0e-57 226.9 703 35.3
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 4.2e-56 223.8 414 44.0
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 9.4e-56 222.6 702 32.1
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 3.6e-55 220.7 709 35.1
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 1.4e-54 218.8 446 37.2
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 4.0e-54 217.2 716 34.5
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 4.0e-54 217.2 672 33.0
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 1.1e-53 215.7 692 35.0
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.5e-53 215.3 671 34.6
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 1.3e-52 212.2 672 33.8
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 2.8e-52 211.1 489 35.4
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 1.1e-51 209.1 585 34.2
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 3.1e-51 207.6 701 31.1
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 7.0e-51 206.5 336 46.7
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 2.7e-50 204.5 707 33.1
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 4.5e-50 203.8 708 32.5
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 5.9e-50 203.4 707 30.6
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 1.0e-49 202.6 711 32.2
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 1.3e-49 202.2 247 46.2
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 2.5e-48 198.0 414 39.1
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 2.7e-47 194.5 708 30.8
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 1.0e-46 192.6 354 41.2
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 2.3e-46 191.4 404 36.1
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 6.8e-46 189.9 336 45.5
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 7.5e-45 186.4 377 40.3
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 3.7e-44 184.1 368 37.2
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 4.8e-44 183.7 592 32.3
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 6.3e-44 183.3 565 30.6
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 1.4e-43 182.2 341 43.4
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 1.8e-43 181.8 337 41.8
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 7.0e-43 179.9 337 41.8
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 7.0e-43 179.9 588 32.0
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 9.1e-43 179.5 337 41.8
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 9.1e-43 179.5 337 41.8
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 5.9e-42 176.8 404 39.9
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 5.9e-42 176.8 367 37.3
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 1.1e-40 172.6 350 39.4
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 1.5e-40 172.2 424 34.7
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 4.2e-40 170.6 392 39.3
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 7.2e-40 169.9 404 37.1
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 7.2e-40 169.9 337 38.6
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 7.2e-40 169.9 503 35.6
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 2.1e-39 168.3 337 40.7
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 2.1e-39 168.3 485 33.6
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 2.7e-39 167.9 346 39.9
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 2.7e-39 167.9 373 37.0
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 3.6e-39 167.5 428 37.6
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 6.1e-39 166.8 343 39.1
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 6.1e-39 166.8 378 36.2
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 1.8e-38 165.2 338 39.9
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 2.3e-38 164.9 610 31.8
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 2.3e-38 164.9 610 31.8
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 8.8e-38 162.9 393 38.4
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 2.8e-36 157.9 703 30.4
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 3.7e-36 157.5 407 32.2
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 6.3e-36 156.8 622 32.3
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 8.3e-36 156.4 536 28.5
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 7.0e-35 153.3 320 37.2
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 1.0e-33 149.4 338 34.3
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 1.7e-33 148.7 434 30.6
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 1.1e-32 146.0 831 25.6
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 2.5e-32 144.8 617 30.1
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 3.6e-31 141.0 248 39.9
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 6.1e-31 140.2 140 52.1
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 1.7e-28 132.1 751 27.0
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 8.3e-28 129.8 394 29.7
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 1.8e-27 128.6 569 27.9
HPP92_018374 Vanilla planifolia HOM05D005642 ORTHO05D006672 2.4e-27 128.3 346 33.5
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 3.5e-26 124.4 221 38.0
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 5.0e-25 120.6 355 32.1
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 5.6e-24 117.1 247 33.6
Zm00001eb067810 Zea mays HOM05D005642 ORTHO05D006672 1.6e-23 115.5 467 26.8
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 3.1e-22 111.3 404 30.4
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 8.3e-20 103.2 161 54.0
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 3.5e-18 97.8 102 51.0
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 8.6e-17 93.2 249 32.5
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 1.1e-16 92.8 229 38.0
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 3.1e-14 84.7 344 31.4
arahy.Tifrunner.gnm1.ann1.T032QQ Arachis hypogaea HOM05D005642 ORTHO05D010845 8.3e-12 76.6 112 41.1
MELO3C019915.2 Cucumis melo HOM05D003044 ORTHO05D001869 1.1e-11 76.3 359 25.6
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 1.4e-11 75.9 284 31.7
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 4.1e-11 74.3 99 42.4
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 7.1e-11 73.6 159 36.5
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 4.6e-10 70.9 245 27.8
MD00G1205700 Malus domestica HOM05D005642 ORTHO05D006672 6.0e-10 70.5 77 54.5
DCAR_000668 Daucus carota HOM05D005642 ORTHO05D006672 5.1e-09 67.4 539 25.8
Lj6g0024518 Lotus japonicus HOM05D003044 ORTHO05D001869 6.6e-09 67.0 307 29.3
ATR0697G055 Amborella trichopoda HOM05D003044 ORTHO05D001869 8.6e-09 66.6 279 27.6
Nn2g12064 Nelumbo nucifera HOM05D006756 ORTHO05D001869 3.3e-08 64.7 352 25.3
Ciclev10014057m.g Citrus clementina HOM05D003044 ORTHO05D001869 9.5e-08 63.2 597 26.6
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 1.2e-07 62.8 290 26.2
TAR636G1345 Trochodendron aralioides HOM05D003044 ORTHO05D001869 2.1e-07 62.0 301 25.9
CDE07G1072 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 2.8e-07 61.6 323 28.5
Potri.010G244700 Populus trichocarpa HOM05D003044 ORTHO05D001869 2.8e-07 61.6 324 25.0
Solyc11g006390.2 Solanum lycopersicum HOM05D003044 ORTHO05D001869 2.8e-07 61.6 318 29.2
Lj7A752T55 Lonicera japonica HOM05D005642 ORTHO05D006672 3.6e-07 61.2 353 28.9
MD07G1063100 Malus domestica HOM05D003044 ORTHO05D001869 3.6e-07 61.2 286 27.3
Sed0023754 Sechium edule HOM05D003044 ORTHO05D001869 3.6e-07 61.2 329 26.1
Sopen11g002290 Solanum pennellii HOM05D003044 ORTHO05D001869 3.6e-07 61.2 304 29.3
MD02G1257800 Malus domestica HOM05D003044 ORTHO05D001869 1.4e-06 59.3 322 25.2
SEGI_30019 Sequoiadendron giganteum HOM05D003044 ORTHO05D006672 2.3e-06 58.5 300 31.7
CSS0000792 Camellia sinensis var. sinensis HOM05D003044 ORTHO05D001869 3.1e-06 58.2 279 28.7
CsaV3_6G004440 Cucumis sativus L. HOM05D003044 ORTHO05D001869 3.1e-06 58.2 346 24.3
Ca_10422_v3 Cicer arietinum L. HOM05D003044 ORTHO05D001869 4.0e-06 57.8 301 28.9
TAR633G1492 Trochodendron aralioides HOM05D003044 ORTHO05D001869 4.0e-06 57.8 292 27.4
Rhsim09G0062600 Rhododendron simsii HOM05D005642 ORTHO05D006672 5.2e-06 57.4 123 38.2


User provided reference genes

Program Settings