Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0221 Trochodendron aralioides HOM05D003302 ORTHO05D003785 9.5e-71 270.0 131 100.0
Haze_08314 Corylus avellana HOM05D003302 ORTHO05D003785 2.5e-47 192.2 131 69.5
Haze_08315 Corylus avellana HOM05D003302 ORTHO05D003785 2.5e-47 192.2 131 69.5
GSVIVG01023127001 Vitis vinifera HOM05D003302 ORTHO05D003785 7.3e-47 190.7 131 70.2
Aqoxy3G02548 Aquilegia oxysepala HOM05D003302 ORTHO05D003785 4.7e-46 188.0 131 67.9
Duzib205G0194 Durio zibethinus HOM05D003302 ORTHO05D003785 1.4e-45 186.4 131 66.4
Cfa012369 Carpinus fangiana HOM05D003302 ORTHO05D003785 2.4e-45 185.7 131 67.9
Dinv28907 Davidia involucrata HOM05D003302 ORTHO05D003785 8.9e-45 183.7 130 66.9
Nn1g00641 Nelumbo nucifera HOM05D003302 ORTHO05D003785 9.9e-44 180.3 128 69.5
PGR142G3064 Punica granatum HOM05D003302 ORTHO05D003785 1.3e-43 179.9 131 67.9
CiPaw.12G059400 Carya illinoinensis HOM05D003302 ORTHO05D003785 2.2e-43 179.1 131 65.6
Thecc.03G235300 Theobroma cacao HOM05D003302 ORTHO05D003785 3.8e-43 178.3 130 63.8
Actinidia03397 Actinidia chinensis HOM05D003302 ORTHO05D003785 6.4e-43 177.6 130 64.6
MSTRG.1965 Avicennia marina HOM05D003302 ORTHO05D003785 1.9e-42 176.0 130 65.4
Duzib084G0162 Durio zibethinus HOM05D003302 ORTHO05D003785 4.2e-42 174.9 130 62.3
RcHm_v2.0_Chr7g0208021 Rosa chinensis HOM05D003302 ORTHO05D003785 5.4e-42 174.5 131 62.6
Potri.001G147801 Populus trichocarpa HOM05D003302 ORTHO05D003785 7.1e-42 174.1 131 64.1
Prupe.5G048500 Prunus persica HOM05D003302 ORTHO05D003785 7.1e-42 174.1 132 64.4
QL12p007349 Quercus lobata HOM05D003302 ORTHO05D003785 7.1e-42 174.1 130 66.2
Potri.003G086801 Populus trichocarpa HOM05D003302 ORTHO05D003785 2.1e-41 172.6 131 62.6
COL.COLO4_17129 Corchorus olitorius HOM05D003302 ORTHO05D003785 3.5e-41 171.8 131 61.8
Atru.chr6.1790 Acer truncatum HOM05D003302 ORTHO05D003785 4.6e-41 171.4 131 63.4
Cpa.g.sc29.6 Carica papaya HOM05D003302 ORTHO05D003785 4.6e-41 171.4 131 63.4
Sabra03G0056500 Salix brachista HOM05D003302 ORTHO05D003785 4.6e-41 171.4 131 63.4
TWI60G1391 Tripterygium wilfordii HOM05D003302 ORTHO05D003785 6.0e-41 171.0 131 63.4
Manes.15G171966 Manihot esculenta HOM05D003302 ORTHO05D003785 3.0e-40 168.7 131 62.6
Glyma.15G129400 Glycine max HOM05D003302 ORTHO05D003785 3.9e-40 168.3 131 63.4
Oeu037876.2 Olea europaea HOM05D003302 ORTHO05D003785 1.9e-39 166.0 131 60.3
PSO063G6934 Papaver somniferum HOM05D003302 ORTHO05D003785 3.3e-39 165.2 131 62.6
Ca_00809_v3 Cicer arietinum L. HOM05D003302 ORTHO05D003785 5.6e-39 164.5 131 60.3
Glyma.09G023300 Glycine max HOM05D003302 ORTHO05D003785 5.6e-39 164.5 131 63.4
PSO782G0278 Papaver somniferum HOM05D003302 ORTHO05D003785 7.3e-39 164.1 131 62.6
Gohir.A03G002901 Gossypium hirsutum HOM05D003302 ORTHO05D003785 1.6e-38 162.9 130 60.8
Rhsim04G0067200 Rhododendron simsii HOM05D003302 ORTHO05D003785 2.1e-38 162.5 131 62.6
FvH4_5g21000 Fragaria vesca HOM05D003302 ORTHO05D003785 2.8e-38 162.2 131 58.0
FAN08G3359 Fragaria x ananassa HOM05D003302 ORTHO05D003785 2.8e-38 162.2 123 61.0
vmacro00359 Vaccinium macrocarpon HOM05D003302 ORTHO05D003785 2.8e-38 162.2 131 62.6
arahy.Tifrunner.gnm1.ann1.K481AV Arachis hypogaea HOM05D003302 ORTHO05D003785 4.8e-38 161.4 131 62.6
Gohir.D03G169466 Gossypium hirsutum HOM05D003302 ORTHO05D003785 4.8e-38 161.4 131 59.5
VMungo0540G1460 Vigna mungo HOM05D003302 ORTHO05D003785 6.2e-38 161.0 131 60.3
FAN04G2497 Fragaria x ananassa HOM05D003302 ORTHO05D003785 8.1e-38 160.6 123 60.2
Lj8P288T36 Lonicera japonica HOM05D003302 ORTHO05D003785 8.1e-38 160.6 131 61.8
FAN18G0007 Fragaria x ananassa HOM05D003302 ORTHO05D003785 1.1e-37 160.2 123 59.3
EL10Ac5g11380 Beta vulgaris HOM05D003302 ORTHO05D003785 1.8e-37 159.5 131 59.5
Solyc08g077385.1 Solanum lycopersicum HOM05D003302 ORTHO05D003785 2.4e-37 159.1 131 63.4
Psat1g168040 Pisum sativum HOM05D003302 ORTHO05D003785 3.1e-37 158.7 131 60.3
CANSAT11G1544 Cannabis sativa HOM05D003302 ORTHO05D003785 5.3e-37 157.9 119 66.4
PGSC0003DMG400001864 Solanum tuberosum HOM05D003302 ORTHO05D003785 5.3e-37 157.9 131 62.6
TPR.G26325 Trifolium pratense HOM05D003302 ORTHO05D003785 5.3e-37 157.9 131 60.3
Phvul.006G128900 Phaseolus vulgaris HOM05D003302 ORTHO05D003785 6.9e-37 157.5 131 60.3
THA.LOC104798339 Tarenaya hassleriana HOM05D003302 ORTHO05D003785 6.9e-37 157.5 131 58.8
Lalb_Chr18g0057931 Lupinus albus HOM05D003302 ORTHO05D003785 9.0e-37 157.1 121 60.3
FAN13G0755 Fragaria x ananassa HOM05D003302 ORTHO05D003785 1.2e-36 156.8 123 59.3
Sopen08g025970 Solanum pennellii HOM05D003302 ORTHO05D003785 1.2e-36 156.8 129 62.8
unitig_62.g23447 Utricularia gibba HOM05D003302 ORTHO05D003785 1.2e-36 156.8 137 59.1
unitig_65.g29877 Utricularia gibba HOM05D003302 ORTHO05D003785 1.2e-36 156.8 137 59.1
AUR62029877 Chenopodium quinoa HOM05D003302 ORTHO05D003785 1.5e-36 156.4 131 57.3
Nitab4.5_0004832g0030 Nicotiana tabacum HOM05D003302 ORTHO05D003785 4.4e-36 154.8 131 59.5
Nitab4.5_0008694g0030 Nicotiana tabacum HOM05D003302 ORTHO05D003785 4.4e-36 154.8 131 59.5
arahy.Tifrunner.gnm1.ann1.HY98G0 Arachis hypogaea HOM05D003302 ORTHO05D003785 9.9e-36 153.7 130 60.0
Sc25g0000590 Simmondsia chinensis HOM05D003302 ORTHO05D003785 9.9e-36 153.7 131 56.5
MELO3C003368.2 Cucumis melo HOM05D003302 ORTHO05D003785 1.7e-35 152.9 123 63.4
ClCG09G012410 Citrullus lanatus HOM05D003302 ORTHO05D003785 3.8e-35 151.8 129 59.7
CAN.G289.41 Capsicum annuum HOM05D003302 ORTHO05D003785 8.4e-35 150.6 131 60.3
AUR62025829 Chenopodium quinoa HOM05D003302 ORTHO05D003785 8.4e-35 150.6 96 69.8
Rhsim11G0009600 Rhododendron simsii HOM05D003302 ORTHO05D003785 1.1e-34 150.2 130 60.0
CAN.G572.44 Capsicum annuum HOM05D003302 ORTHO05D003785 1.9e-34 149.4 131 60.3
CsaV3_3G049580 Cucumis sativus L. HOM05D003302 ORTHO05D003785 2.4e-34 149.1 123 62.6
CAN.G572.50 Capsicum annuum HOM05D003302 ORTHO05D003785 5.4e-34 147.9 131 59.5
Sed0026531 Sechium edule HOM05D003302 ORTHO05D003785 1.3e-32 143.3 131 55.7
Os10g0567500 Oryza sativa ssp. japonica HOM05D003302 ORTHO05D003785 3.0e-32 142.1 94 68.1
HPP92_007162 Vanilla planifolia HOM05D003302 ORTHO05D003785 3.9e-32 141.7 120 58.3
DCAR_005601 Daucus carota HOM05D003302 ORTHO05D003785 6.6e-32 141.0 131 55.7
Aa31LG9G6000 Aethionema arabicum HOM05D003302 ORTHO05D003785 8.7e-32 140.6 131 51.9
SHI07509 Sapria himalayana HOM05D003302 ORTHO05D003785 8.7e-32 140.6 129 54.3
ATR0827G173 Amborella trichopoda HOM05D003302 ORTHO05D003785 3.3e-31 138.7 120 57.5
HanXRQChr16g0522971 Helianthus annuus HOM05D003302 ORTHO05D003785 3.3e-31 138.7 131 54.2
HanXRQChr07g0188531 Helianthus annuus HOM05D003302 ORTHO05D003785 7.4e-31 137.5 122 55.7
CDE12G0679 Ceratophyllum demersum HOM05D003302 ORTHO05D003785 1.3e-30 136.7 84 73.8
AT5G46920 Arabidopsis thaliana HOM05D003302 ORTHO05D003785 2.1e-30 136.0 137 49.6
A06p45460 Brassica napus HOM05D003302 ORTHO05D003785 2.1e-30 136.0 104 60.6
BraA06t27414Z Brassica rapa HOM05D003302 ORTHO05D003785 2.1e-30 136.0 90 66.7
CAN.G15328.1 Capsicum annuum HOM05D003302 ORTHO05D003785 2.1e-30 136.0 155 51.0
Zm00001eb004560 Zea mays HOM05D003302 ORTHO05D003785 6.2e-30 134.4 83 71.1
C07p30510 Brassica napus HOM05D003302 ORTHO05D003785 8.1e-30 134.0 104 60.6
BolC7t43592H Brassica oleracea HOM05D003302 ORTHO05D003785 8.1e-30 134.0 104 60.6
Lsat_1_v5_gn_4_38500 Lactuca sativa HOM05D003302 ORTHO05D003785 8.1e-30 134.0 79 75.9
AL8G11350 Arabidopsis lyrata HOM05D003302 ORTHO05D003785 1.1e-29 133.7 137 49.6
Sp2g11710 Schrenkiella parvula HOM05D003302 ORTHO05D003785 1.4e-29 133.3 90 65.6
Zm00001eb210180 Zea mays HOM05D003302 ORTHO05D003785 1.4e-29 133.3 130 52.3
ECA248G2391 Erigeron canadensis HOM05D003302 ORTHO05D003785 9.0e-29 130.6 130 51.5
SEGI_25417 Sequoiadendron giganteum HOM05D003302 ORTHO05D003785 7.1e-26 120.9 85 62.4
SEGI_34960 Sequoiadendron giganteum HOM05D003302 ORTHO05D003785 4.8e-22 108.2 91 49.5
CDE06G1020 Ceratophyllum demersum HOM05D003302 ORTHO05D003785 2.6e-20 102.4 70 67.1
Oeu034153.1 Olea europaea HOM05D003302 ORTHO05D003785 1.3e-19 100.1 104 44.2
QL10p038886 Quercus lobata HOM05D003302 ORTHO05D003785 4.9e-19 98.2 77 55.8
Sc05g0006220 Simmondsia chinensis HOM05D003302 ORTHO05D003785 1.1e-18 97.1 81 53.1
CiPaw.09G124000 Carya illinoinensis HOM05D003302 ORTHO05D003785 1.9e-18 96.3 77 55.8
Potri.004G132450 Populus trichocarpa HOM05D003302 ORTHO05D003785 2.5e-18 95.9 77 55.8
VMungo0540G2182 Vigna mungo HOM05D003302 ORTHO05D003785 2.5e-18 95.9 101 44.6
MBI07_g26352_MAGBIO Magnolia biondii HOM05D003302 ORTHO05D003785 3.2e-18 95.5 102 46.1
PGR083G1399 Punica granatum HOM05D003302 ORTHO05D003785 5.5e-18 94.7 81 51.9
Aqoxy1G01714 Aquilegia oxysepala HOM05D003302 ORTHO05D003785 7.1e-18 94.4 85 48.2
CDE11G0149 Ceratophyllum demersum HOM05D003302 ORTHO05D003785 9.3e-18 94.0 77 49.4
Manes.17G069108 Manihot esculenta HOM05D003302 ORTHO05D003785 1.2e-17 93.6 77 54.5
Cpa.g.sc166.10 Carica papaya HOM05D003302 ORTHO05D003785 1.6e-17 93.2 98 46.9
Lj1P1187T27 Lonicera japonica HOM05D003302 ORTHO05D003785 1.6e-17 93.2 77 53.2
Cfa000950 Carpinus fangiana HOM05D003302 ORTHO05D003785 2.1e-17 92.8 77 54.5
Glyma.15G094350 Glycine max HOM05D003302 ORTHO05D003785 2.1e-17 92.8 77 53.2
unitig_32.g11443 Utricularia gibba HOM05D003302 ORTHO05D003785 2.7e-17 92.4 77 54.5
Actinidia19525 Actinidia chinensis HOM05D003302 ORTHO05D003785 3.5e-17 92.0 77 51.9
CAN.G1235.21 Capsicum annuum HOM05D003302 ORTHO05D003785 3.5e-17 92.0 101 42.6
Gohir.A11G314450 Gossypium hirsutum HOM05D003302 ORTHO05D003785 3.5e-17 92.0 77 51.9
Gohir.D11G331550 Gossypium hirsutum HOM05D003302 ORTHO05D003785 3.5e-17 92.0 77 51.9
Sabra04G0085500 Salix brachista HOM05D003302 ORTHO05D003785 3.5e-17 92.0 77 53.2
BcaC05g27013 Brassica carinata HOM05D003302 ORTHO05D003785 4.6e-17 91.7 77 51.9
C05p28800 Brassica napus HOM05D003302 ORTHO05D003785 4.6e-17 91.7 77 51.9
BolC5t31597H Brassica oleracea HOM05D003302 ORTHO05D003785 4.6e-17 91.7 77 51.9
BraA09t39172Z Brassica rapa HOM05D003302 ORTHO05D003785 4.6e-17 91.7 77 51.9
COL.COLO4_29330 Corchorus olitorius HOM05D003302 ORTHO05D003785 4.6e-17 91.7 77 50.6
Sp1g25890 Schrenkiella parvula HOM05D003302 ORTHO05D003785 4.6e-17 91.7 77 51.9
Thecc.05G173100 Theobroma cacao HOM05D003302 ORTHO05D003785 4.6e-17 91.7 77 51.9
ClCG03G006880 Citrullus lanatus HOM05D003302 ORTHO05D003785 6.0e-17 91.3 77 51.9
Haze_05590 Corylus avellana HOM05D003302 ORTHO05D003785 6.0e-17 91.3 77 53.2
Nn3g20766 Nelumbo nucifera HOM05D003302 ORTHO05D003785 6.0e-17 91.3 81 49.4
PGSC0003DMG400018655 Solanum tuberosum HOM05D003302 ORTHO05D003785 6.0e-17 91.3 101 42.6
AUR62002753 Chenopodium quinoa HOM05D003302 ORTHO05D003785 7.9e-17 90.9 77 51.9
AUR62030203 Chenopodium quinoa HOM05D003302 ORTHO05D003785 7.9e-17 90.9 77 50.6
Dinv30741 Davidia involucrata HOM05D003302 ORTHO05D003785 7.9e-17 90.9 77 53.2
Nitab4.5_0000165g0160 Nicotiana tabacum HOM05D003302 ORTHO05D003785 7.9e-17 90.9 77 50.6
Psat1g190600 Pisum sativum HOM05D003302 ORTHO05D003785 7.9e-17 90.9 77 50.6
AL1G43900 Arabidopsis lyrata HOM05D003302 ORTHO05D003785 1.0e-16 90.5 77 50.6
arahy.Tifrunner.gnm1.ann1.JNH5N4 Arachis hypogaea HOM05D003302 ORTHO05D003785 1.0e-16 90.5 77 51.9
arahy.Tifrunner.gnm1.ann1.VBQQ6F Arachis hypogaea HOM05D003302 ORTHO05D003785 1.0e-16 90.5 77 51.9
Ca_00544_v3 Cicer arietinum L. HOM05D003302 ORTHO05D003785 1.0e-16 90.5 77 50.6
CsaV3_1G032460 Cucumis sativus L. HOM05D003302 ORTHO05D003785 1.0e-16 90.5 77 50.6
SHI24871 Sapria himalayana HOM05D003302 ORTHO05D003785 1.0e-16 90.5 77 46.8
Sopen01g054090 Solanum pennellii HOM05D003302 ORTHO05D003785 1.3e-16 90.1 100 43.0
THA.LOC104820647 Tarenaya hassleriana HOM05D003302 ORTHO05D003785 1.3e-16 90.1 77 50.6
EL10Ac4g07785 Beta vulgaris HOM05D003302 ORTHO05D003785 1.8e-16 89.7 77 49.4
CARHR029380 Cardamine hirsuta HOM05D003302 ORTHO05D003785 1.8e-16 89.7 77 50.6
DCAR_003918 Daucus carota HOM05D003302 ORTHO05D003785 1.8e-16 89.7 94 43.6
Hma1.2p1_0053F.1_g030960 Hydrangea macrophylla HOM05D003302 ORTHO05D003785 2.3e-16 89.4 100 46.0
Lalb_Chr15g0086841 Lupinus albus HOM05D003302 ORTHO05D003785 2.3e-16 89.4 77 50.6
TAR375G0955 Trochodendron aralioides HOM05D003302 ORTHO05D003785 2.3e-16 89.4 50 82.0
TAR629G3501 Trochodendron aralioides HOM05D003302 ORTHO05D003785 2.3e-16 89.4 77 50.6
EL10Ac8g19691 Beta vulgaris HOM05D003302 ORTHO05D003785 3.0e-16 89.0 77 49.4
CANSAT35G0225 Cannabis sativa HOM05D003302 ORTHO05D003785 3.0e-16 89.0 77 50.6
Solyc01g112025.1 Solanum lycopersicum HOM05D003302 ORTHO05D003785 3.0e-16 89.0 77 49.4
HPP92_002850 Vanilla planifolia HOM05D003302 ORTHO05D003785 3.9e-16 88.6 77 51.9
Atru.chr10.1237 Acer truncatum HOM05D003302 ORTHO05D003785 5.1e-16 88.2 77 50.6
A09p36490 Brassica napus HOM05D003302 ORTHO05D003785 5.1e-16 88.2 77 49.4
Nitab4.5_0011942g0010 Nicotiana tabacum HOM05D003302 ORTHO05D003785 5.1e-16 88.2 77 49.4
Aa31LG6G5650 Aethionema arabicum HOM05D003302 ORTHO05D003785 6.7e-16 87.8 77 49.4
AT1G30010 Arabidopsis thaliana HOM05D003302 ORTHO05D003785 6.7e-16 87.8 98 41.8
Zm00001eb006520 Zea mays HOM05D003302 ORTHO05D003785 6.7e-16 87.8 93 44.1
Actinidia25937 Actinidia chinensis HOM05D003302 ORTHO05D003785 8.7e-16 87.4 77 55.8
MD05G1284200 Malus domestica HOM05D003302 ORTHO05D003785 8.7e-16 87.4 77 48.1
HanXRQChr15g0486511 Helianthus annuus HOM05D003302 ORTHO05D003785 1.1e-15 87.0 77 45.5
RcHm_v2.0_Chr5g0014061 Rosa chinensis HOM05D003302 ORTHO05D003785 1.1e-15 87.0 77 49.4
Duzib128G1415 Durio zibethinus HOM05D003302 ORTHO05D003785 1.5e-15 86.7 77 50.6
PSO541G5669 Papaver somniferum HOM05D003302 ORTHO05D003785 1.5e-15 86.7 77 48.1
ECA232G0620 Erigeron canadensis HOM05D003302 ORTHO05D003785 1.9e-15 86.3 77 41.6
FvH4_3g05620 Fragaria vesca HOM05D003302 ORTHO05D003785 3.3e-15 85.5 77 48.1
FAN11G3285 Fragaria x ananassa HOM05D003302 ORTHO05D003785 3.3e-15 85.5 77 48.1
FAN21G1953 Fragaria x ananassa HOM05D003302 ORTHO05D003785 3.3e-15 85.5 77 48.1
Lsat_1_v5_gn_8_116740 Lactuca sativa HOM05D003302 ORTHO05D003785 3.3e-15 85.5 77 45.5
MD10G1262500 Malus domestica HOM05D003302 ORTHO05D003785 4.3e-15 85.1 77 46.8
MELO3C002733.2 Cucumis melo HOM05D003302 ORTHO05D003785 5.7e-15 84.7 77 48.1
Ah.09g232620 Amaranthus hybridus HOM05D003302 ORTHO05D003785 7.4e-15 84.3 77 46.8
SGA_v2.0_scaffold1G00170 Striga asiatica HOM05D003302 ORTHO05D003785 7.4e-15 84.3 77 46.8
PSO675G7265 Papaver somniferum HOM05D003302 ORTHO05D003785 9.6e-15 84.0 77 46.8
Actinidia16714 Actinidia chinensis HOM05D003302 ORTHO05D003785 1.3e-14 83.6 101 41.6
ATR0064G047 Amborella trichopoda HOM05D003302 ORTHO05D003785 1.6e-14 83.2 77 46.8
vmacro03962 Vaccinium macrocarpon HOM05D003302 ORTHO05D003785 1.6e-14 83.2 77 48.1
Os12g0407300 Oryza sativa ssp. japonica HOM05D003302 ORTHO05D003785 2.1e-14 82.8 77 48.1
Rhsim13G0194800 Rhododendron simsii HOM05D003302 ORTHO05D003785 4.8e-14 81.6 77 46.8
TWI38G0102 Tripterygium wilfordii HOM05D003302 ORTHO05D003785 8.2e-14 80.9 77 48.1
Glyma.13G218051 Glycine max HOM05D003302 ORTHO05D003785 1.4e-13 80.1 77 50.6
ATR0665G600 Amborella trichopoda HOM05D003302 ORTHO05D003785 4.1e-13 78.6 48 68.8
ATR1091G061 Amborella trichopoda HOM05D003302 ORTHO05D003785 4.1e-13 78.6 77 45.5
BraA02t08067Z Brassica rapa HOM05D003302 ORTHO05D003785 1.2e-12 77.0 68 55.9
A02p30490 Brassica napus HOM05D003302 ORTHO05D003785 4.5e-12 75.1 68 54.4
BolC2t10839H Brassica oleracea HOM05D003302 ORTHO05D003785 5.5e-10 68.2 62 53.2
BcaC03g16905 Brassica carinata HOM05D018638 ORTHO05D019917 1.2e-09 67.0 58 55.2


User provided reference genes

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