Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 1.1e-297 1025.8 504 100.0
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 5.5e-175 618.2 409 72.9
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 2.9e-168 595.9 406 70.0
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 1.1e-167 594.0 404 69.8
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 6.1e-166 588.2 409 70.7
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 1.3e-165 587.0 406 70.0
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 1.1e-164 583.9 412 69.7
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 1.5e-164 583.6 409 70.9
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 5.3e-162 575.1 409 68.9
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 3.8e-160 568.9 406 68.7
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 8.5e-160 567.8 409 69.2
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 6.1e-158 561.6 408 66.7
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 1.4e-157 560.5 406 67.2
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 6.7e-157 558.1 377 72.4
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 7.4e-156 554.7 406 68.5
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 4.8e-155 552.0 410 65.6
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 1.1e-154 550.8 418 65.1
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 1.2e-153 547.4 407 65.1
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 1.2e-153 547.4 473 60.3
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 1.5e-153 547.0 413 65.6
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 1.3e-152 543.9 408 65.0
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.9e-151 540.0 413 63.9
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 3.2e-151 539.3 406 65.8
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 1.2e-150 537.3 409 65.3
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 1.6e-150 537.0 410 64.6
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 1.0e-149 534.3 406 65.3
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 1.4e-149 533.9 406 63.8
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 1.8e-149 533.5 418 63.6
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 3.0e-149 532.7 406 65.0
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 3.0e-149 532.7 406 63.5
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 5.2e-149 531.9 406 63.5
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 5.2e-149 531.9 420 63.3
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 1.1e-148 530.8 481 57.2
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 2.0e-148 530.0 421 62.9
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 2.0e-148 530.0 408 64.5
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 4.4e-148 528.9 406 64.5
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 9.7e-148 527.7 432 60.4
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.3e-147 527.3 446 59.4
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 3.7e-147 525.8 408 63.2
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 3.7e-147 525.8 410 62.9
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 4.8e-147 525.4 403 64.3
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 8.2e-147 524.6 376 68.4
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 8.2e-147 524.6 442 59.7
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 1.1e-146 524.2 406 64.5
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 4.1e-146 522.3 404 62.9
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 9.1e-146 521.2 409 64.1
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 1.2e-145 520.8 406 64.5
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 2.0e-145 520.0 433 61.4
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 3.5e-145 519.2 404 62.9
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 4.5e-145 518.8 405 62.7
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 7.7e-145 518.1 405 62.5
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 2.2e-144 516.5 406 63.3
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 2.2e-144 516.5 405 62.7
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 2.2e-144 516.5 405 62.0
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 3.8e-144 515.8 405 63.0
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 5.0e-144 515.4 404 63.4
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 8.5e-144 514.6 516 53.1
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 9.4e-143 511.1 405 62.5
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 2.1e-142 510.0 405 61.7
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 3.6e-142 509.2 405 62.0
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 6.1e-142 508.4 407 62.2
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 1.4e-141 507.3 406 61.1
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 1.8e-141 506.9 405 61.2
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 2.3e-141 506.5 404 61.6
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 2.3e-141 506.5 404 61.6
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 5.2e-141 505.4 403 63.5
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 4.4e-140 502.3 406 61.8
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 5.7e-140 501.9 407 61.4
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 9.7e-140 501.1 410 63.4
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 4.8e-139 498.8 406 59.9
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 1.4e-138 497.3 407 60.7
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 6.5e-136 488.4 376 64.6
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 8.5e-136 488.0 406 62.1
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 1.4e-133 480.7 387 62.3
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 1.8e-133 480.3 409 60.6
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 1.3e-131 474.2 408 56.1
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 8.0e-126 454.9 407 56.0
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 2.6e-124 449.9 407 57.5
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 1.3e-123 447.6 396 57.8
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 2.8e-123 446.4 408 53.4
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 6.6e-120 435.3 407 53.6
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 7.3e-119 431.8 407 53.6
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 3.4e-116 422.9 521 47.8
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 7.5e-116 421.8 328 65.9
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 1.3e-115 421.0 407 56.8
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 4.1e-114 416.0 400 55.5
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 4.9e-107 392.5 301 64.1
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.1e-103 381.3 436 48.9
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 2.8e-102 376.7 356 54.2
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 1.9e-95 354.0 239 70.3
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 7.3e-87 325.5 406 44.6
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 1.4e-85 321.2 408 42.9
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 6.0e-81 305.8 315 52.7
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 5.1e-80 302.8 370 48.4
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 9.6e-79 298.5 216 65.7
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 3.1e-77 293.5 412 39.1
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 4.0e-77 293.1 431 44.3
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 6.9e-77 292.4 172 76.7
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 1.7e-75 287.7 258 57.8
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 4.9e-75 286.2 169 74.6
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 6.0e-73 279.3 413 43.6
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 4.2e-66 256.5 260 51.9
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 2.1e-65 254.2 150 76.0
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 3.9e-64 250.0 287 46.7
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 1.0e-59 235.3 141 73.8
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 8.7e-56 222.2 563 29.0
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 8.2e-54 215.7 406 36.5
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 8.5e-51 205.7 178 56.2
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 5.5e-50 203.0 138 69.6
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 2.7e-49 200.7 121 77.7
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 7.4e-47 192.6 114 78.1
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 8.2e-46 189.1 151 57.6
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 1.4e-45 188.3 222 43.7
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 3.4e-44 183.7 245 43.7
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 1.7e-43 181.4 97 80.4
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 2.2e-43 181.0 269 39.4
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 5.3e-37 159.8 179 49.2
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 3.8e-35 153.7 438 27.6
Lj4C790T17 Lonicera japonica HOM05D005790 ORTHO05D007464 1.4e-32 145.2 77 80.5
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 1.3e-27 128.6 170 41.8
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 7.2e-26 122.9 252 34.1
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 7.2e-26 122.9 252 34.1
Cfa025606 Carpinus fangiana HOM05D005790 ORTHO05D007464 3.0e-24 117.5 394 27.4
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 4.8e-22 110.2 475 26.1
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 6.3e-22 109.8 184 41.8
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 2.9e-19 100.9 440 27.7
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 2.9e-19 100.9 55 76.4
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 1.6e-17 95.1 51 82.4
Cpa.g.sc140.30 Carica papaya HOM05D005790 ORTHO05D007464 2.7e-17 94.4 54 81.5
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 8.0e-17 92.8 59 64.4
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 1.3e-11 75.5 52 67.3
CDE05G1505 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 4.7e-09 67.0 57 59.6
COL.COLO4_38433 Corchorus olitorius HOM05D005790 ORTHO05D030850 1.5e-07 62.0 31 71.0
VMungo0331G1008 Vigna mungo HOM05D005790 ORTHO05D007464 5.7e-07 60.1 27 85.2
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 7.5e-07 59.7 35 82.9
Actinidia29794 Actinidia chinensis HOM05D005790 ORTHO05D030850 1.3e-06 58.9 31 67.7
Cre10.g460100 Chlamydomonas reinhardtii HOM05D010245 ORTHO05D017828 1.7e-06 58.5 88 36.4
CBR_g8695 Chara braunii HOM05D000163 ORTHO05D009137 3.7e-06 57.4 97 30.9


User provided reference genes

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