Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 0.0e+00 1219.9 706 100.0
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 3.0e-288 995.0 707 84.0
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.1e-226 790.4 708 62.7
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 2.2e-222 776.2 711 68.1
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 5.4e-221 771.5 708 60.5
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 5.6e-218 761.5 708 66.9
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 9.6e-218 760.8 670 69.3
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.3e-214 750.4 654 72.9
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.3e-214 750.4 704 66.1
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 1.1e-213 747.3 707 58.8
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 7.1e-213 744.6 711 64.6
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.5e-210 736.1 712 64.2
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 3.6e-209 732.3 707 63.6
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 2.9e-206 722.6 707 58.0
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 4.2e-205 718.8 708 64.0
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 1.5e-202 710.3 709 65.4
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 1.3e-201 707.2 703 61.0
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 2.1e-201 706.4 715 61.0
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 1.1e-200 704.1 705 62.4
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 6.4e-198 694.9 704 62.9
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 5.1e-195 685.3 706 60.6
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 8.7e-195 684.5 704 63.2
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.1e-194 684.1 704 63.1
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 1.5e-194 683.7 634 71.0
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 2.8e-193 679.5 704 63.6
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.8e-193 679.5 715 60.0
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.8e-193 679.5 704 62.4
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 1.1e-192 677.6 710 58.2
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.4e-192 677.2 704 62.9
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 3.1e-192 676.0 704 62.6
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 5.3e-192 675.2 715 60.4
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 9.0e-192 674.5 711 60.6
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.5e-191 673.7 704 62.5
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 1.5e-191 673.7 716 57.7
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 3.4e-191 672.5 703 61.7
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 2.2e-190 669.8 772 48.8
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 1.4e-189 667.2 713 61.0
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 5.5e-189 665.2 711 57.1
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 3.0e-187 659.4 711 57.8
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 5.7e-186 655.2 710 59.3
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 7.4e-186 654.8 710 58.6
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.8e-184 650.2 709 56.4
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 3.1e-184 649.4 705 58.2
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 5.3e-184 648.7 709 61.2
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 2.0e-183 646.7 706 59.3
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 4.5e-183 645.6 706 59.3
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.5e-183 645.6 766 51.4
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.4e-181 640.6 738 55.6
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 3.2e-181 639.4 707 57.0
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 3.0e-179 632.9 705 59.4
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 6.7e-179 631.7 711 59.2
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 8.7e-179 631.3 705 59.0
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 1.9e-178 630.2 707 59.1
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 3.3e-178 629.4 742 58.0
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 4.3e-178 629.0 707 59.7
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 4.3e-178 629.0 710 58.9
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 9.7e-178 627.9 708 58.5
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 3.7e-177 625.9 705 58.3
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 5.0e-174 615.5 725 55.7
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 6.5e-174 615.1 707 58.8
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 3.2e-173 612.8 707 58.7
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 2.1e-172 610.1 714 58.3
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 2.7e-172 609.8 709 59.9
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 3.6e-172 609.4 742 53.6
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 3.0e-171 606.3 709 56.7
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 7.4e-170 601.7 704 56.4
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 2.2e-169 600.1 708 58.8
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 2.9e-166 589.7 735 53.7
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 5.5e-165 585.5 723 52.4
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 1.6e-164 583.9 715 56.4
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 1.6e-164 583.9 708 58.1
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 3.9e-163 579.3 701 51.5
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 6.7e-163 578.6 633 59.4
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 5.7e-162 575.5 705 56.3
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 1.7e-161 573.9 706 56.2
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 6.3e-161 572.0 711 56.7
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 2.0e-159 567.0 704 55.4
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-158 564.3 528 62.3
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 8.5e-158 561.6 702 48.4
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 5.5e-157 558.9 705 55.2
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 1.2e-156 557.8 708 54.5
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 6.1e-156 555.4 707 54.3
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 6.1e-156 555.4 717 45.2
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 8.0e-156 555.1 710 56.2
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 1.4e-155 554.3 708 54.4
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 6.7e-155 552.0 704 56.2
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 8.8e-155 551.6 704 55.1
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 8.8e-155 551.6 715 55.5
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 8.8e-155 551.6 704 51.6
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.1e-154 551.2 704 54.0
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 1.5e-154 550.8 708 53.8
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 1.5e-154 550.8 704 53.0
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 2.0e-154 550.4 708 54.7
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 9.7e-154 548.1 703 55.5
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 9.7e-154 548.1 700 56.7
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 4.8e-153 545.8 708 54.2
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 1.8e-152 543.9 704 53.1
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 4.1e-152 542.7 705 55.7
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 6.5e-150 535.4 704 52.7
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 4.8e-145 519.2 637 59.0
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 1.2e-143 514.6 709 44.0
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 1.0e-142 511.5 711 44.6
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.2e-141 506.1 520 62.9
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 3.0e-139 500.0 526 60.3
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 8.8e-139 498.4 706 45.8
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 6.3e-137 492.3 710 46.3
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 2.5e-133 480.3 478 65.7
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 7.2e-133 478.8 712 43.1
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 2.8e-132 476.9 627 56.9
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 2.8e-132 476.9 535 48.8
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 4.0e-131 473.0 716 48.6
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 8.3e-129 465.3 708 49.6
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 7.8e-127 458.8 575 54.6
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.8e-116 423.7 730 42.6
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 3.2e-112 410.2 520 55.2
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.5e-109 401.4 728 38.6
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.3e-105 388.3 319 71.2
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 4.9e-97 359.8 461 49.2
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.0e-94 352.1 490 43.9
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.3e-94 350.9 479 45.3
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 1.2e-90 338.6 540 44.4
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 5.8e-90 336.3 542 39.5
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 1.5e-82 311.6 722 41.7
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 1.1e-80 305.4 347 47.6
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 6.0e-79 299.7 426 51.9
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 3.4e-74 283.9 254 77.6
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.9e-65 254.2 435 38.2
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 4.2e-64 250.4 277 63.2
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.1e-61 242.3 256 62.9
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 2.9e-49 201.1 203 52.7
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 7.2e-48 196.4 286 50.0
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 6.3e-44 183.3 653 31.2
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 4.1e-43 180.6 130 69.2
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 7.0e-43 179.9 124 68.5
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 2.0e-42 178.3 574 26.8
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 5.5e-40 170.2 122 65.6
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 2.3e-38 164.9 189 58.7
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 3.1e-35 154.5 216 55.1
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 2.0e-34 151.8 134 59.7
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.5e-32 145.6 122 59.0
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.9e-32 145.2 136 69.9
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 2.1e-31 141.7 121 60.3
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 6.1e-31 140.2 534 30.0
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 2.7e-26 124.8 139 64.0
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 1.7e-25 122.1 122 47.5
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 5.0e-25 120.6 109 55.0
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 7.2e-24 116.7 107 52.3
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 1.6e-23 115.5 164 43.3
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.6e-23 114.4 98 64.3
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.4e-19 101.7 93 50.5
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.1e-19 101.3 97 50.5
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.0e-19 100.1 93 58.1
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 1.2e-18 99.4 71 63.4
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.9e-17 94.7 52 76.9
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 6.6e-17 93.6 258 28.7
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.9e-16 92.0 92 47.8
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.3e-16 91.3 97 45.4
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.3e-16 91.3 97 45.4
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 7.3e-16 90.1 141 36.9
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.3e-14 85.1 56 76.8
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.3e-14 85.1 97 43.3
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 2.3e-14 85.1 287 28.2
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 8.9e-14 83.2 76 59.2
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.0e-13 82.0 97 42.3
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.6e-13 81.6 97 44.3
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.6e-13 81.6 56 73.2
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 2.6e-13 81.6 59 71.2
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.4e-13 80.9 56 73.2
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 4.4e-13 80.9 259 27.8
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.7e-13 80.5 56 73.2
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.5e-13 80.1 56 73.2
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.5e-13 80.1 97 43.3
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.5e-13 80.1 56 73.2
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 8.3e-12 76.6 276 44.9
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 2.4e-11 75.1 132 39.4
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 2.0e-10 72.0 121 41.3
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 5.0e-09 67.4 66 51.5
Actinidia36898 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.1e-08 66.2 133 38.3
CAN.G475.12 Capsicum annuum HOM05D003682 ORTHO05D004224 1.1e-08 66.2 51 54.9
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 1.9e-08 65.5 75 48.0
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 1.4e-06 59.3 31 77.4


User provided reference genes

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