Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0623 Trochodendron aralioides HOM05D003914 ORTHO05D001189 0.0e+00 1517.3 746 100.0
TAR625G0765 Trochodendron aralioides HOM05D003914 ORTHO05D001189 0.0e+00 1309.7 748 86.8
Nn5g28958 Nelumbo nucifera HOM05D003914 ORTHO05D001189 0.0e+00 1158.3 750 74.9
CSS0032385 Camellia sinensis var. sinensis HOM05D003914 ORTHO05D001189 0.0e+00 1151.0 751 76.2
Rhsim08G0208100 Rhododendron simsii HOM05D003914 ORTHO05D001189 0.0e+00 1148.7 753 74.8
Dinv21395 Davidia involucrata HOM05D003914 ORTHO05D001189 0.0e+00 1146.7 752 75.9
vmacro19039 Vaccinium macrocarpon HOM05D003914 ORTHO05D001189 0.0e+00 1136.3 753 73.8
Thecc.06G038600 Theobroma cacao HOM05D003914 ORTHO05D001189 0.0e+00 1104.7 753 70.9
Duzib235G0729 Durio zibethinus HOM05D003914 ORTHO05D001189 0.0e+00 1103.6 750 71.7
QL05p034889 Quercus lobata HOM05D003914 ORTHO05D001189 0.0e+00 1100.9 754 72.3
Aqoxy7G03430 Aquilegia oxysepala HOM05D003914 ORTHO05D001189 0.0e+00 1099.7 750 71.2
Gohir.D10G082300 Gossypium hirsutum HOM05D003914 ORTHO05D001189 0.0e+00 1095.9 753 71.6
Gorai.011G089200 Gossypium raimondii HOM05D003914 ORTHO05D001189 0.0e+00 1094.0 753 71.6
Cfa001895 Carpinus fangiana HOM05D003914 ORTHO05D001189 0.0e+00 1093.6 754 71.0
Cc04_g04890 Coffea canephora HOM05D003914 ORTHO05D001189 0.0e+00 1090.1 749 70.0
Gohir.A10G069101 Gossypium hirsutum HOM05D003914 ORTHO05D001189 0.0e+00 1089.7 753 71.0
Manes.04G104700 Manihot esculenta HOM05D003914 ORTHO05D001189 0.0e+00 1088.9 753 70.9
Lj5A78T80 Lonicera japonica HOM05D003914 ORTHO05D001189 0.0e+00 1085.9 749 70.6
MD08G1215300 Malus domestica HOM05D003914 ORTHO05D001189 0.0e+00 1083.2 753 71.0
Ciclev10024784m.g Citrus clementina HOM05D003914 ORTHO05D001189 0.0e+00 1080.5 753 70.0
COL.COLO4_26660 Corchorus olitorius HOM05D003914 ORTHO05D001189 0.0e+00 1080.1 750 69.7
Oeu010367.1 Olea europaea HOM05D003914 ORTHO05D001189 5.1e-312 1074.3 754 69.0
MD15G1399200 Malus domestica HOM05D003914 ORTHO05D001189 5.1e-312 1073.9 753 70.3
PSO210G6726 Papaver somniferum HOM05D003914 ORTHO05D001189 1.1e-309 1066.2 749 69.4
Sc26g0002670 Simmondsia chinensis HOM05D003914 ORTHO05D001189 4.3e-309 1064.3 745 70.2
PSO447G0077 Papaver somniferum HOM05D003914 ORTHO05D001189 1.6e-308 1062.4 749 69.3
TWI12G1414 Tripterygium wilfordii HOM05D003914 ORTHO05D001189 2.8e-308 1061.6 750 68.7
Potri.003G180100 Populus trichocarpa HOM05D003914 ORTHO05D001189 1.1e-307 1059.7 755 69.3
Prupe.2G099100 Prunus persica HOM05D003914 ORTHO05D001189 1.9e-304 1048.9 753 68.7
Haze_16646 Corylus avellana HOM05D003914 ORTHO05D001189 3.5e-303 1044.6 859 62.2
CANSAT56G3222 Cannabis sativa HOM05D003914 ORTHO05D001189 8.6e-302 1040.0 754 67.2
Eucgr.F03948 Eucalyptus grandis HOM05D003914 ORTHO05D001189 8.6e-302 1040.0 753 67.1
SGA_v2.0_scaffold5G02755 Striga asiatica HOM05D003914 ORTHO05D001189 7.3e-301 1036.9 750 67.5
Sopen03g036030 Solanum pennellii HOM05D003914 ORTHO05D001189 2.1e-300 1035.4 749 66.8
PGSC0003DMG400014195 Solanum tuberosum HOM05D003914 ORTHO05D001189 2.3e-299 1031.9 749 66.6
CAN.G407.47 Capsicum annuum HOM05D003914 ORTHO05D001189 4.0e-299 1031.2 750 65.9
RcHm_v2.0_Chr1g0336931 Rosa chinensis HOM05D003914 ORTHO05D001189 7.6e-298 1026.9 753 67.7
Migut.I00709 Erythranthe guttata HOM05D003914 ORTHO05D001189 1.7e-297 1025.8 749 66.8
PGR102G3368 Punica granatum HOM05D003914 ORTHO05D001189 1.7e-297 1025.8 750 65.7
SalBow7G0967 Salvia bowleyana HOM05D003914 ORTHO05D001189 2.7e-295 1018.5 753 66.3
CiPaw.01G252800 Carya illinoinensis HOM05D003914 ORTHO05D001189 4.6e-295 1017.7 755 67.7
SalBow5G0986 Salvia bowleyana HOM05D003914 ORTHO05D001189 4.6e-295 1017.7 753 66.3
SalBow5G5560 Salvia bowleyana HOM05D003914 ORTHO05D001189 4.6e-295 1017.7 753 66.3
FAN08G1096 Fragaria x ananassa HOM05D003914 ORTHO05D001189 5.1e-294 1014.2 750 67.2
FAN18G0022 Fragaria x ananassa HOM05D003914 ORTHO05D001189 1.1e-293 1013.1 751 67.0
FvH4_5g27200 Fragaria vesca HOM05D003914 ORTHO05D001189 5.6e-293 1010.7 751 66.8
FAN13G1654 Fragaria x ananassa HOM05D003914 ORTHO05D001189 9.6e-293 1010.0 751 67.0
DCAR_025582 Daucus carota HOM05D003914 ORTHO05D001189 1.2e-292 1009.6 750 64.7
EL10Ac3g05211 Beta vulgaris HOM05D003914 ORTHO05D001189 1.6e-292 1009.2 753 65.6
Peaxi162Scf00332g00329 Petunia axillaris HOM05D003914 ORTHO05D001189 4.7e-292 1007.7 750 65.9
Glyma.14G005800 Glycine max HOM05D003914 ORTHO05D001189 1.2e-290 1003.0 753 63.9
MELO3C014532.2 Cucumis melo HOM05D003914 ORTHO05D001189 1.4e-288 996.1 746 66.8
MBI05_g01294_MAGBIO Magnolia biondii HOM05D003914 ORTHO05D001189 1.9e-288 995.7 654 74.8
Phvul.008G287100 Phaseolus vulgaris HOM05D003914 ORTHO05D001189 4.2e-288 994.6 753 62.9
arahy.Tifrunner.gnm1.ann1.39XWEQ Arachis hypogaea HOM05D003914 ORTHO05D001189 2.1e-287 992.3 753 63.1
Solyc03g117120.4 Solanum lycopersicum HOM05D003914 ORTHO05D001189 3.5e-287 991.5 749 64.6
arahy.Tifrunner.gnm1.ann1.E1J0LN Arachis hypogaea HOM05D003914 ORTHO05D001189 4.6e-287 991.1 753 62.9
CsaV3_6G038690 Cucumis sativus L. HOM05D005551 ORTHO05D001189 7.8e-287 990.3 742 67.4
VMungo0647G1679 Vigna mungo HOM05D003914 ORTHO05D001189 7.8e-287 990.3 753 63.1
Nitab4.5_0011117g0010 Nicotiana tabacum HOM05D003914 ORTHO05D001189 6.6e-286 987.3 745 65.6
ClCG02G022560 Citrullus lanatus HOM05D003914 ORTHO05D001189 8.7e-286 986.9 755 66.0
LjContig00081g0020682 Lotus japonicus HOM05D003914 ORTHO05D001189 1.6e-284 982.6 749 63.0
THA.LOC104812443 Tarenaya hassleriana HOM05D003914 ORTHO05D001189 2.1e-284 982.2 747 64.1
Ca_06471_v3 Cicer arietinum L. HOM05D003914 ORTHO05D001189 9.0e-283 976.9 762 62.9
Medtr5g097890 Medicago truncatula HOM05D003914 ORTHO05D001189 2.6e-282 975.3 751 62.8
ATR0048G029 Amborella trichopoda HOM05D003914 ORTHO05D001189 4.4e-282 974.5 738 65.4
Ah.02g130190 Amaranthus hybridus HOM05D003914 ORTHO05D001189 1.3e-281 973.0 778 62.3
TPR.G15053 Trifolium pratense HOM05D003914 ORTHO05D001189 3.2e-280 968.4 747 62.8
Nitab4.5_0001454g0080 Nicotiana tabacum HOM05D003914 ORTHO05D001189 5.4e-280 967.6 774 62.5
Lalb_Chr04g0247201 Lupinus albus HOM05D003914 ORTHO05D001189 7.1e-280 967.2 754 62.5
Thhalv10018057m.g Eutrema salsugineum HOM05D003914 ORTHO05D001189 2.3e-278 962.2 747 62.5
CDE05G2347 Ceratophyllum demersum HOM05D003914 ORTHO05D001189 3.9e-278 961.4 757 61.3
Sed0002099 Sechium edule HOM05D003914 ORTHO05D001189 7.3e-277 957.2 747 63.6
AT1G80680 Arabidopsis thaliana HOM05D003914 ORTHO05D001189 2.8e-276 955.3 747 62.9
AUR62019191 Chenopodium quinoa HOM05D003914 ORTHO05D001189 4.8e-276 954.5 723 64.7
BcaB02g07257 Brassica carinata HOM05D003914 ORTHO05D001189 9.0e-275 950.3 740 62.6
ECA247G0583 Erigeron canadensis HOM05D003914 ORTHO05D001189 1.5e-274 949.5 749 62.8
SalBow5G1255 Salvia bowleyana HOM05D003914 ORTHO05D001189 1.5e-274 949.5 753 62.7
Carub.0002s2688 Capsella rubella HOM05D003914 ORTHO05D001189 4.5e-274 948.0 748 62.2
Sp5g35080 Schrenkiella parvula HOM05D003914 ORTHO05D001189 9.9e-274 946.8 748 62.0
BcaB05g25235 Brassica carinata HOM05D003914 ORTHO05D001189 1.3e-273 946.4 748 62.2
AL2G40760 Arabidopsis lyrata HOM05D003914 ORTHO05D001189 3.2e-272 941.8 749 61.5
BcaC08g45332 Brassica carinata HOM05D003914 ORTHO05D001189 4.2e-272 941.4 747 61.8
A07p26790 Brassica napus HOM05D003914 ORTHO05D001189 2.7e-271 938.7 747 61.4
BraA07t30322Z Brassica rapa HOM05D003914 ORTHO05D001189 2.7e-271 938.7 747 61.4
Aa31LG7G450 Aethionema arabicum HOM05D003914 ORTHO05D001189 8.7e-270 933.7 750 60.7
A02p23230 Brassica napus HOM05D003914 ORTHO05D001189 5.6e-269 931.0 747 61.8
Os03g0172000 Oryza sativa ssp. japonica HOM05D003914 ORTHO05D001189 9.6e-269 930.2 738 60.6
C06p29420 Brassica napus HOM05D003914 ORTHO05D001189 2.1e-268 929.1 747 60.9
BolC6t38107H Brassica oleracea HOM05D003914 ORTHO05D001189 2.1e-268 929.1 747 60.9
Zm00001eb402160 Zea mays HOM05D003914 ORTHO05D001189 1.3e-262 909.8 742 59.7
HanXRQChr03g0080251 Helianthus annuus HOM05D003914 ORTHO05D001189 1.8e-262 909.4 751 61.1
C02p36990 Brassica napus HOM05D003914 ORTHO05D001189 1.4e-259 899.8 734 61.0
Lsat_1_v5_gn_1_32000 Lactuca sativa HOM05D003914 ORTHO05D001189 1.2e-258 896.7 751 59.4
CARHR073840 Cardamine hirsuta HOM05D003914 ORTHO05D001189 9.1e-243 844.0 637 64.1
HanXRQChr08g0217431 Helianthus annuus HOM05D003914 ORTHO05D001189 4.5e-242 841.6 686 61.5
HanXRQChr02g0034961 Helianthus annuus HOM05D003914 ORTHO05D001189 4.2e-240 835.1 697 60.8
SEGI_18885 Sequoiadendron giganteum HOM05D003914 ORTHO05D001189 7.0e-235 817.8 741 55.7
Psat2g003960 Pisum sativum HOM05D003914 ORTHO05D001189 1.2e-231 807.0 603 63.7
HPP92_024673 Vanilla planifolia HOM05D003914 ORTHO05D001189 2.0e-213 746.5 719 53.7
SalBow5G5111 Salvia bowleyana HOM05D003914 ORTHO05D001189 7.5e-213 744.6 607 60.6
BraA02t07320Z Brassica rapa HOM05D003914 ORTHO05D001189 5.2e-206 721.8 542 65.7
Oeu008404.1 Olea europaea HOM05D003914 ORTHO05D001189 2.0e-189 666.8 481 67.8
Cpa.g.sc2.93 Carica papaya HOM05D003914 ORTHO05D001189 1.8e-182 643.7 437 71.2
Mapoly0028s0046 Marchantia polymorpha HOM05D003914 ORTHO05D001189 7.8e-178 628.2 709 46.0
MD16G1257100 Malus domestica HOM05D003914 ORTHO05D001189 8.9e-174 614.8 563 56.3
Pp3c26_7720 Physcomitrium patens HOM05D003914 ORTHO05D001189 6.0e-170 602.1 728 43.3
AUR62026733 Chenopodium quinoa HOM05D003914 ORTHO05D001189 1.8e-166 590.5 488 60.5
SMO367G0807 Selaginella moellendorffii HOM05D003914 ORTHO05D001189 4.2e-155 552.7 710 42.4
AagrBONN_evm.TU.Sc2ySwM_340.72 Anthoceros agrestis HOM05D003914 ORTHO05D001189 5.3e-150 535.8 706 42.8
Actinidia28303 Actinidia chinensis HOM05D003914 ORTHO05D001189 1.6e-138 497.7 745 42.4
Actinidia18235 Actinidia chinensis HOM05D003914 ORTHO05D001189 3.8e-132 476.5 356 64.0
ATR0564G275 Amborella trichopoda HOM05D003914 ORTHO05D001189 1.0e-129 468.4 456 53.9
AUR62013548 Chenopodium quinoa HOM05D003914 ORTHO05D001189 2.8e-127 460.3 620 42.1
arahy.Tifrunner.gnm1.ann1.448EM4 Arachis hypogaea HOM05D003914 ORTHO05D001189 3.1e-118 430.3 315 65.4
unitig_61.g26230 Utricularia gibba HOM05D003914 ORTHO05D001189 1.0e-116 425.2 370 57.8
Zm00001eb242170 Zea mays HOM05D003914 ORTHO05D001189 7.2e-115 419.1 363 55.1
unitig_61.g26229 Utricularia gibba HOM05D003914 ORTHO05D001189 2.1e-114 417.5 316 63.9
CBR_g34675 Chara braunii HOM05D003914 ORTHO05D001189 3.3e-112 410.2 691 36.8
Actinidia25447 Actinidia chinensis HOM05D003914 ORTHO05D001189 1.1e-94 352.1 241 71.8
FAN27G3525 Fragaria x ananassa HOM05D003914 ORTHO05D001189 1.6e-90 338.2 275 61.5
FAN08G1181 Fragaria x ananassa HOM05D003914 ORTHO05D001189 6.8e-89 332.8 275 60.7
arahy.Tifrunner.gnm1.ann1.AIB04B Arachis hypogaea HOM05D003914 ORTHO05D001189 3.9e-84 317.0 347 47.6
Atru.chr10.2395 Acer truncatum HOM05D003914 ORTHO05D001189 1.2e-77 295.4 226 67.3
FAN02G0445 Fragaria x ananassa HOM05D003914 ORTHO05D001189 1.3e-76 292.0 232 62.9
GSVIVG01017553001 Vitis vinifera HOM05D003914 ORTHO05D001189 1.3e-76 292.0 200 71.0
FAN15G1664 Fragaria x ananassa HOM05D003914 ORTHO05D001189 3.9e-76 290.4 232 62.5
FAN25G0399 Fragaria x ananassa HOM05D003914 ORTHO05D001189 3.9e-68 263.8 232 59.1
Zm00001eb206280 Zea mays HOM05D003914 ORTHO05D001189 3.3e-67 260.8 265 47.9
FAN12G2419 Fragaria x ananassa HOM05D003914 ORTHO05D001189 6.9e-57 226.5 232 53.0
Zm00001eb072150 Zea mays HOM05D003914 ORTHO05D001189 1.5e-56 225.3 205 51.2
Zm00001eb104230 Zea mays HOM05D003914 ORTHO05D001189 2.0e-56 224.9 208 51.4
Zm00001eb037140 Zea mays HOM05D003914 ORTHO05D001189 2.6e-56 224.6 205 51.2
Zm00001eb336550 Zea mays HOM05D003914 ORTHO05D001189 2.5e-51 208.0 183 54.1
Zm00001eb075600 Zea mays HOM05D003914 ORTHO05D001189 3.3e-51 207.6 183 54.1
HPP92_024664 Vanilla planifolia HOM05D003914 ORTHO05D001189 8.1e-50 203.0 129 65.1
arahy.Tifrunner.gnm1.ann1.W0G0JC Arachis hypogaea HOM05D000229 ORTHO05D001189 2.6e-48 198.0 232 44.4
Atru.chr10.2394 Acer truncatum HOM05D003914 ORTHO05D001189 1.2e-45 189.1 132 65.9
Zm00001eb386800 Zea mays HOM05D003914 ORTHO05D001189 2.0e-40 171.8 104 73.1
Nn1g04288 Nelumbo nucifera HOM05D003914 ORTHO05D001189 5.1e-36 157.1 114 66.7
SHI11253 Sapria himalayana HOM05D003914 ORTHO05D001189 1.6e-34 152.1 140 55.0
Zm00001eb052930 Zea mays HOM05D003914 ORTHO05D006988 1.9e-30 138.7 130 53.8
HanXRQChr02g0034921 Helianthus annuus HOM05D003914 ORTHO05D001189 3.2e-30 137.9 124 57.3
Zm00001eb059520 Zea mays HOM05D003914 ORTHO05D001189 3.2e-30 137.9 125 55.2
Zm00001eb421450 Zea mays HOM05D003914 ORTHO05D001189 3.2e-30 137.9 125 55.2
arahy.Tifrunner.gnm1.ann1.UV7GDF Arachis hypogaea HOM05D003914 ORTHO05D001189 3.0e-28 131.3 129 51.2
Zm00001eb236280 Zea mays HOM05D003914 ORTHO05D001189 5.7e-27 127.1 121 53.7
SalBow5G3025 Salvia bowleyana HOM05D003914 ORTHO05D001189 2.1e-26 125.2 106 61.3
Pp3c26_7670 Physcomitrium patens HOM05D003914 ORTHO05D001189 3.7e-26 124.4 147 42.9
PRCOL_00003883 Prasinoderma coloniale HOM05D003914 ORTHO05D001189 4.1e-25 120.9 536 25.0
Cre02.g086887 Chlamydomonas reinhardtii HOM05D003914 ORTHO05D001189 7.6e-24 116.7 598 23.4
Atru.chr10.2396 Acer truncatum HOM05D003914 ORTHO05D001189 1.1e-22 112.8 88 63.6
CARHR073830 Cardamine hirsuta HOM05D003914 ORTHO05D001189 4.6e-21 107.5 94 57.4
Zm00001eb154890 Zea mays HOM05D003914 ORTHO05D001189 6.1e-21 107.1 100 53.0
Zm00001eb386790 Zea mays HOM05D003914 ORTHO05D001189 8.7e-20 103.2 97 52.6
FAN15G0820 Fragaria x ananassa HOM05D000208 ORTHO05D000130 3.6e-13 81.3 71 57.7
SalBow7G2866 Salvia bowleyana HOM05D003914 ORTHO05D001189 1.2e-08 66.2 131 35.1
Cpa.g.sc2.90 Carica papaya HOM05D003914 ORTHO05D001189 5.9e-08 63.9 60 55.0


User provided reference genes

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