Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G1028 Trochodendron aralioides HOM05D003897 ORTHO05D005095 3.0e-148 528.5 265 100.0
Duzib248G1300 Durio zibethinus HOM05D003897 ORTHO05D005095 2.8e-37 159.8 92 87.0
Thecc.02G106100 Theobroma cacao HOM05D003897 ORTHO05D005095 3.7e-37 159.5 92 87.0
Gohir.A04G119600 Gossypium hirsutum HOM05D003897 ORTHO05D005095 4.8e-37 159.1 92 85.9
Gohir.A12G022600 Gossypium hirsutum HOM05D003897 ORTHO05D005095 4.8e-37 159.1 92 85.9
Gohir.D12G023000 Gossypium hirsutum HOM05D003897 ORTHO05D005095 4.8e-37 159.1 92 85.9
Gorai.008G023500 Gossypium raimondii HOM05D003897 ORTHO05D005095 4.8e-37 159.1 92 85.9
Nn3g20693 Nelumbo nucifera HOM05D003897 ORTHO05D005095 6.2e-37 158.7 93 86.0
PGR042G2465 Punica granatum HOM05D003897 ORTHO05D005095 6.2e-37 158.7 93 83.9
FvH4_2g05450 Fragaria vesca HOM05D003897 ORTHO05D005095 8.1e-37 158.3 92 87.0
FAN20G3196 Fragaria x ananassa HOM05D003897 ORTHO05D005095 8.1e-37 158.3 92 87.0
FAN24G2661 Fragaria x ananassa HOM05D003897 ORTHO05D005095 8.1e-37 158.3 92 87.0
FAN27G3036 Fragaria x ananassa HOM05D003897 ORTHO05D005095 8.1e-37 158.3 92 87.0
Actinidia17882 Actinidia chinensis HOM05D003897 ORTHO05D005095 1.1e-36 157.9 92 84.8
Actinidia27966 Actinidia chinensis HOM05D003897 ORTHO05D005095 1.4e-36 157.5 92 83.7
CSS0022988 Camellia sinensis var. sinensis HOM05D003897 ORTHO05D005095 1.4e-36 157.5 92 85.9
Dinv15751 Davidia involucrata HOM05D003897 ORTHO05D005095 1.4e-36 157.5 92 85.9
Prupe.8G132000 Prunus persica HOM05D003897 ORTHO05D005095 1.4e-36 157.5 95 82.1
CAN.G184.18 Capsicum annuum HOM05D003897 ORTHO05D005095 1.8e-36 157.1 92 83.7
Prupe.8G132400 Prunus persica HOM05D003897 ORTHO05D005095 1.8e-36 157.1 95 83.2
RcHm_v2.0_Chr6g0255731 Rosa chinensis HOM05D003897 ORTHO05D005095 1.8e-36 157.1 92 85.9
CiPaw.06G170300 Carya illinoinensis HOM05D003897 ORTHO05D005095 2.4e-36 156.8 92 85.9
COL.COLO4_32614 Corchorus olitorius HOM05D003897 ORTHO05D005095 2.4e-36 156.8 93 83.9
Gorai.012G149200 Gossypium raimondii HOM05D003897 ORTHO05D005095 2.4e-36 156.8 92 84.8
Eucgr.G01370 Eucalyptus grandis HOM05D003897 ORTHO05D005095 3.1e-36 156.4 92 84.8
Nn4g26537 Nelumbo nucifera HOM05D003897 ORTHO05D005095 3.1e-36 156.4 93 84.9
Atru.chr5.2594 Acer truncatum HOM05D003897 ORTHO05D005095 4.0e-36 156.0 92 85.9
Atru.chr9.455 Acer truncatum HOM05D003897 ORTHO05D005095 4.0e-36 156.0 92 85.9
Gohir.D10G077900 Gossypium hirsutum HOM05D003897 ORTHO05D011058 4.0e-36 156.0 92 83.7
Solyc05g010300.4 Solanum lycopersicum HOM05D003897 ORTHO05D005095 4.0e-36 156.0 92 82.6
ATR0782G093 Amborella trichopoda HOM05D003897 ORTHO05D005095 5.3e-36 155.6 92 85.9
CsaV3_2G010370 Cucumis sativus L. HOM05D003897 ORTHO05D005095 5.3e-36 155.6 93 82.8
Gohir.D07G187633 Gossypium hirsutum HOM05D003897 ORTHO05D005095 5.3e-36 155.6 92 81.5
Manes.07G075381 Manihot esculenta HOM05D003897 ORTHO05D005095 5.3e-36 155.6 92 85.9
Nitab4.5_0000027g0450 Nicotiana tabacum HOM05D003897 ORTHO05D005095 5.3e-36 155.6 92 80.4
AL3G47140 Arabidopsis lyrata HOM05D003897 ORTHO05D005095 6.9e-36 155.2 92 79.3
Ciclev10028849m.g Citrus clementina HOM05D003897 ORTHO05D005095 6.9e-36 155.2 92 85.9
Gohir.D04G161200 Gossypium hirsutum HOM05D003897 ORTHO05D005095 6.9e-36 155.2 92 83.7
Lsat_1_v5_gn_9_111421 Lactuca sativa HOM05D003897 ORTHO05D005095 6.9e-36 155.2 92 83.7
Rhsim05G0087400 Rhododendron simsii HOM05D003897 ORTHO05D005095 6.9e-36 155.2 92 83.7
RhsimUnG0060800 Rhododendron simsii HOM05D003897 ORTHO05D005095 6.9e-36 155.2 92 83.7
Sed0005062 Sechium edule HOM05D003897 ORTHO05D005095 6.9e-36 155.2 93 82.8
Dinv42183 Davidia involucrata HOM05D003897 ORTHO05D005095 9.0e-36 154.8 92 83.7
Sopen05g006070 Solanum pennellii HOM05D003897 ORTHO05D005095 9.0e-36 154.8 92 81.5
Manes.10G077334 Manihot esculenta HOM05D003897 ORTHO05D005095 1.2e-35 154.5 92 87.0
MELO3C008589.2 Cucumis melo HOM05D003897 ORTHO05D005095 1.5e-35 154.1 93 81.7
Lj5C213T4 Lonicera japonica HOM05D003897 ORTHO05D005095 1.5e-35 154.1 92 81.5
Potri.009G097600 Populus trichocarpa HOM05D003897 ORTHO05D005095 1.5e-35 154.1 92 84.8
vmacro19519 Vaccinium macrocarpon HOM05D003897 ORTHO05D005095 1.5e-35 154.1 92 83.7
Aqoxy6G02891 Aquilegia oxysepala HOM05D003897 ORTHO05D005095 2.0e-35 153.7 92 83.7
CANSAT25G1851 Cannabis sativa HOM05D003897 ORTHO05D005095 2.0e-35 153.7 93 83.9
Thhalv10022739m.g Eutrema salsugineum HOM05D003897 ORTHO05D005095 2.0e-35 153.7 92 81.5
GSVIVG01003174001 Vitis vinifera HOM05D003897 ORTHO05D005095 2.0e-35 153.7 92 83.7
ClCG11G007460 Citrullus lanatus HOM05D003897 ORTHO05D005095 2.6e-35 153.3 91 84.6
MD10G1096200 Malus domestica HOM05D003897 ORTHO05D005095 2.6e-35 153.3 92 84.8
AL3G47150 Arabidopsis lyrata HOM05D003897 ORTHO05D005095 3.4e-35 152.9 92 80.4
Haze_10156 Corylus avellana HOM05D003897 ORTHO05D005095 3.4e-35 152.9 91 84.6
Nitab4.5_0010998g0010 Nicotiana tabacum HOM05D003897 ORTHO05D005095 4.5e-35 152.5 92 79.3
Sabra09G0074900 Salix brachista HOM05D003897 ORTHO05D005095 4.5e-35 152.5 98 79.6
Sp3g28700 Schrenkiella parvula HOM05D003897 ORTHO05D005095 4.5e-35 152.5 92 79.3
ECA240G4340 Erigeron canadensis HOM05D003897 ORTHO05D005095 5.8e-35 152.1 92 81.5
HanXRQChr03g0070231 Helianthus annuus HOM05D003897 ORTHO05D005095 5.8e-35 152.1 92 81.5
HanXRQChr16g0530591 Helianthus annuus HOM05D003897 ORTHO05D005095 5.8e-35 152.1 92 81.5
Sc18g0005670 Simmondsia chinensis HOM05D003897 ORTHO05D005095 5.8e-35 152.1 93 82.8
TWI31G0147 Tripterygium wilfordii HOM05D003897 ORTHO05D005095 5.8e-35 152.1 94 78.7
Peaxi162Scf00188g00619 Petunia axillaris HOM05D003897 ORTHO05D005095 7.6e-35 151.8 94 78.7
TAR636G1512 Trochodendron aralioides HOM05D001570 ORTHO05D001566 7.6e-35 151.8 116 67.2
DCAR_021998 Daucus carota HOM05D003897 ORTHO05D005095 1.0e-34 151.4 92 80.4
Carub.0003s2927 Capsella rubella HOM05D003897 ORTHO05D005095 1.3e-34 151.0 92 79.3
CDE04G0824 Ceratophyllum demersum HOM05D003897 ORTHO05D005095 1.3e-34 151.0 91 84.6
Ca_18755_v3 Cicer arietinum L. HOM05D003897 ORTHO05D005095 1.3e-34 151.0 92 80.4
Lalb_Chr09g0328701 Lupinus albus HOM05D003897 ORTHO05D005095 1.3e-34 151.0 92 82.6
MD05G1087400 Malus domestica HOM05D003897 ORTHO05D005095 1.3e-34 151.0 92 83.7
PSO541G0439 Papaver somniferum HOM05D003897 ORTHO05D005095 1.3e-34 151.0 92 81.5
PSO675G0875 Papaver somniferum HOM05D003897 ORTHO05D005095 1.3e-34 151.0 92 81.5
TWI79G1683 Tripterygium wilfordii HOM05D003897 ORTHO05D005095 1.3e-34 151.0 94 77.7
AT2G15430 Arabidopsis thaliana HOM05D003897 ORTHO05D005095 1.7e-34 150.6 92 80.4
Thhalv10011661m.g Eutrema salsugineum HOM05D003897 ORTHO05D005095 1.7e-34 150.6 92 78.3
Lalb_Chr05g0219651 Lupinus albus HOM05D003897 ORTHO05D005095 1.7e-34 150.6 92 80.4
QL11p034241 Quercus lobata HOM05D003897 ORTHO05D005095 1.7e-34 150.6 91 83.5
CARHR105780 Cardamine hirsuta HOM05D003897 ORTHO05D005095 3.8e-34 149.4 91 79.1
Medtr4g084150 Medicago truncatula HOM05D003897 ORTHO05D005095 3.8e-34 149.4 92 78.3
TAR628G0435 Trochodendron aralioides HOM05D003897 ORTHO05D005095 3.8e-34 149.4 92 83.7
CDE06G1902 Ceratophyllum demersum HOM05D003897 ORTHO05D005095 4.9e-34 149.1 93 79.6
Glyma.07G220900 Glycine max HOM05D003897 ORTHO05D005095 4.9e-34 149.1 92 79.3
Glyma.20G019200 Glycine max HOM05D003897 ORTHO05D005095 4.9e-34 149.1 92 79.3
arahy.Tifrunner.gnm1.ann1.7FBU4T Arachis hypogaea HOM05D003897 ORTHO05D005095 6.5e-34 148.7 92 80.4
arahy.Tifrunner.gnm1.ann1.9R7E2G Arachis hypogaea HOM05D003897 ORTHO05D005095 6.5e-34 148.7 92 80.4
Rhsim11G0160900 Rhododendron simsii HOM05D003897 ORTHO05D005095 6.5e-34 148.7 92 77.2
Hma1.2p1_0796F.1_g219060 Hydrangea macrophylla HOM05D003897 ORTHO05D005095 1.1e-33 147.9 92 79.3
PSO782G0863 Papaver somniferum HOM05D003897 ORTHO05D005095 1.1e-33 147.9 92 81.5
Pp3c14_9440 Physcomitrium patens HOM05D003897 ORTHO05D005095 1.1e-33 147.9 91 80.2
BcaB03g16292 Brassica carinata HOM05D003897 ORTHO05D005095 1.4e-33 147.5 92 79.3
BcaC06g36057 Brassica carinata HOM05D003897 ORTHO05D005095 1.4e-33 147.5 92 79.3
A07p05280 Brassica napus HOM05D003897 ORTHO05D005095 1.4e-33 147.5 92 79.3
C07p08400 Brassica napus HOM05D003897 ORTHO05D005095 1.4e-33 147.5 92 79.3
BraA09t36718Z Brassica rapa HOM05D003897 ORTHO05D005095 1.4e-33 147.5 92 80.4
Cfa004562 Carpinus fangiana HOM05D003897 ORTHO05D005095 1.4e-33 147.5 92 80.4
PSO063G1051 Papaver somniferum HOM05D003897 ORTHO05D005095 1.4e-33 147.5 91 81.3
Phvul.002G097400 Phaseolus vulgaris HOM05D003897 ORTHO05D005095 1.4e-33 147.5 92 79.3
BcaC04g23047 Brassica carinata HOM05D003897 ORTHO05D005095 1.9e-33 147.1 92 79.3
C09p12730 Brassica napus HOM05D003897 ORTHO05D005095 1.9e-33 147.1 92 79.3
TPR.G38266 Trifolium pratense HOM05D003897 ORTHO05D005095 1.9e-33 147.1 90 81.1
VMungo0251G0352 Vigna mungo HOM05D003897 ORTHO05D005095 1.9e-33 147.1 92 79.3
DCAR_012421 Daucus carota HOM05D003897 ORTHO05D005095 3.2e-33 146.4 93 75.3
Aa31LG8G13200 Aethionema arabicum HOM05D003897 ORTHO05D005095 4.2e-33 146.0 92 76.1
AT2G15400 Arabidopsis thaliana HOM05D003897 ORTHO05D005095 4.2e-33 146.0 92 76.1
A09p10760 Brassica napus HOM05D003897 ORTHO05D005095 4.2e-33 146.0 92 80.4
FAN15G0415 Fragaria x ananassa HOM05D003897 ORTHO05D005095 4.2e-33 146.0 94 79.8
vmacro02010 Vaccinium macrocarpon HOM05D003897 ORTHO05D005095 5.5e-33 145.6 91 79.1
SGA_v2.0_scaffold393G50705 Striga asiatica HOM05D003897 ORTHO05D005095 7.1e-33 145.2 92 80.4
BcaB07g31789 Brassica carinata HOM05D003897 ORTHO05D005095 9.3e-33 144.8 92 78.3
Hund06327 Selenicereus undatus HOM05D003897 ORTHO05D005095 1.6e-32 144.1 101 77.2
Migut.N01173 Erythranthe guttata HOM05D003897 ORTHO05D005095 2.1e-32 143.7 92 76.1
THA.LOC104804386 Tarenaya hassleriana HOM05D003897 ORTHO05D005095 2.1e-32 143.7 115 64.3
MSTRG.27740 Avicennia marina HOM05D003897 ORTHO05D005095 2.7e-32 143.3 92 79.3
EL10Ac9g22306 Beta vulgaris HOM05D003897 ORTHO05D005095 2.7e-32 143.3 92 78.3
SGA_v2.0_scaffold13G06605 Striga asiatica HOM05D003897 ORTHO05D005095 3.5e-32 142.9 92 79.3
AUR62010272 Chenopodium quinoa HOM05D003897 ORTHO05D005095 6.0e-32 142.1 92 79.3
AUR62013252 Chenopodium quinoa HOM05D003897 ORTHO05D005095 6.0e-32 142.1 92 79.3
Lj9C321G13 Lonicera japonica HOM05D003897 ORTHO05D005095 7.9e-32 141.7 91 73.6
Oeu010392.2 Olea europaea HOM05D003897 ORTHO05D005095 1.0e-31 141.4 93 75.3
AUR62026162 Chenopodium quinoa HOM05D003897 ORTHO05D005095 1.3e-31 141.0 92 78.3
unitig_26.g10235 Utricularia gibba HOM05D003897 ORTHO05D005095 1.3e-31 141.0 93 76.3
Oeu028249.2 Olea europaea HOM05D003897 ORTHO05D005095 1.8e-31 140.6 92 77.2
Lj4g0008450 Lotus japonicus HOM05D003897 ORTHO05D005095 3.0e-31 139.8 92 76.1
Cc02_g19130 Coffea canephora HOM05D003897 ORTHO05D005095 8.7e-31 138.3 92 73.9
Mapoly0027s0025 Marchantia polymorpha HOM05D003897 ORTHO05D005095 3.3e-30 136.3 91 74.7
SMO367G1036 Selaginella moellendorffii HOM05D003897 ORTHO05D005095 3.3e-30 136.3 91 72.5
SEGI_05463 Sequoiadendron giganteum HOM05D003897 ORTHO05D005095 5.7e-30 135.6 90 76.7
AagrBONN_evm.TU.Sc2ySwM_117.2300 Anthoceros agrestis HOM05D003897 ORTHO05D005095 1.3e-29 134.4 91 70.3
Ah.01g018040 Amaranthus hybridus HOM05D003897 ORTHO05D005095 2.1e-29 133.7 88 78.4
Dinv12208 Davidia involucrata HOM05D003897 ORTHO05D000011 1.0e-26 124.8 84 77.4
BraA07t28320Z Brassica rapa HOM05D003897 ORTHO05D005095 1.7e-26 124.0 79 78.5
HPP92_020269 Vanilla planifolia HOM05D003897 ORTHO05D005095 7.1e-25 118.6 92 72.8
Os09g0110400 Oryza sativa ssp. japonica HOM05D003897 ORTHO05D005095 2.1e-24 117.1 92 68.5
TAR629G2321 Trochodendron aralioides HOM05D003675 ORTHO05D415849 2.3e-23 113.6 175 40.6
Zm00001eb095630 Zea mays HOM05D003897 ORTHO05D005095 1.1e-22 111.3 91 64.8
arahy.Tifrunner.gnm1.ann1.I4XWR0 Arachis hypogaea HOM05D003897 ORTHO05D005095 1.9e-22 110.5 79 73.4
TAR623G1462 Trochodendron aralioides HOM05D000087 ORTHO05D002585 1.1e-20 104.8 175 40.0
CBR_g49328 Chara braunii HOM05D003897 ORTHO05D005095 2.0e-19 100.5 89 62.9
AagrBONN_evm.TU.Sc2ySwM_362.1866 Anthoceros agrestis HOM05D003897 ORTHO05D005095 1.1e-17 94.7 71 64.8
SalBow3G0479 Salvia bowleyana HOM05D003897 ORTHO05D005095 6.1e-16 89.0 63 73.0
Actinidia00419 Actinidia chinensis HOM05D003897 ORTHO05D005095 1.0e-15 88.2 60 75.0
MCO13G208 Micromonas commoda HOM05D003897 ORTHO05D005095 1.8e-12 77.4 66 59.1
Mapoly0084s0037 Marchantia polymorpha HOM05D003897 ORTHO05D005095 2.4e-12 77.0 68 55.9
arahy.Tifrunner.gnm1.ann1.X9ZCKB Arachis hypogaea HOM05D003897 ORTHO05D003000 2.6e-11 73.6 67 59.7
TAR626G0983 Trochodendron aralioides HOM05D003675 ORTHO05D004318 3.4e-11 73.2 137 35.0
PRCOL_00001769 Prasinoderma coloniale HOM05D003897 ORTHO05D005095 1.4e-09 67.8 66 50.0
C07p08390 Brassica napus HOM05D003897 ORTHO05D039781 6.1e-08 62.4 39 74.4
BolC7t41254H Brassica oleracea HOM05D003897 ORTHO05D005095 6.1e-08 62.4 39 74.4
Pp3c5_19460 Physcomitrium patens HOM05D003897 ORTHO05D005095 1.8e-07 60.8 81 43.2
Dinv23062 Davidia involucrata HOM05D003897 ORTHO05D038990 2.6e-06 57.0 34 82.4
CSS0025199 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 7.4e-06 55.5 70 45.7
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 9.7e-06 55.1 145 32.4


User provided reference genes

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