Gene: Sopen05g006070

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g006070
  • Transcript Identifier Sopen05g006070.1
  • Gene Type Coding gene
  • Location Spenn-ch05 : 4962031-4967173 : positive

Gene Family Information

  • ID HOM05D003897
  • #Genes/#Species 179/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g006070.1

Descriptions

  • Description Non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V | homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog, encoded by At2g15400, can substitute for At2g15430 in the context of Pol V. | NRPB3 | FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding | INVOLVED IN: transcription | LOCATED IN: in 6 components | CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain , DNA-directed RNA polymerase, dimerisation , DNA-directed RNA polymerase, RpoA/D/Rpb3-type , DNA-directed RNA polymerase, 30-40kDa subunit, conserved site , DNA-directed RNA polymerase, RBP11-like | BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase family protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0010374
ISO
PLAZA Integrative Orthologystomatal complex development AT2G15430
GO:0010375
ISO
PLAZA Integrative Orthologystomatal complex patterning AT2G15430

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003899
IEA
InterProDNA-directed 5'-3' RNA polymerase activity
GO:0046983
IEA
InterProprotein dimerization activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G15400

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G15430
GO:0000419
ISO
PLAZA Integrative OrthologyRNA polymerase V complex AT2G15400
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G15430
GO:0000418
ISO
PLAZA Integrative OrthologyRNA polymerase IV complex AT2G15400
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT2G15430
GO:0005665
ISO
PLAZA Integrative OrthologyRNA polymerase II, core complex AT2G15400

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type
IPR036603 RNA polymerase, RBP11-like subunit
IPR036643 DNA-directed RNA polymerase, insert domain superfamily
IPR011262 DNA-directed RNA polymerase, insert domain
Mapman id Description
15.1.6.1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 3