Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 2377.8 1181 100.0
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1801.9 1185 75.5
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1719.1 1179 72.5
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1662.1 1185 70.1
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1651.7 1219 68.5
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1620.9 1171 69.3
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1614.4 1178 68.5
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1609.3 1178 68.3
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1601.3 1176 68.6
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1595.1 1174 67.8
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1580.1 1176 67.1
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1570.4 1181 65.5
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1567.0 1181 67.3
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1565.1 1179 66.3
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1553.5 1170 65.6
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1553.1 1399 58.8
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1545.0 1127 69.7
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1526.9 1175 64.6
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1526.1 1181 67.1
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1523.1 1167 65.7
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1512.3 1383 58.6
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1503.4 1171 62.8
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1495.7 1180 64.1
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1490.3 1194 63.2
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1485.7 1177 62.8
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1484.5 1181 64.2
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1482.6 1178 63.1
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1477.6 1175 62.7
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1476.8 1177 62.4
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1471.8 1175 62.2
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1471.8 1211 60.2
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1467.2 1179 63.8
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1466.1 1179 63.8
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1462.2 1175 61.9
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1460.7 1179 62.1
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1460.3 1184 63.3
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1460.3 1179 62.5
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1458.7 1179 63.3
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1458.4 1185 62.6
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1458.4 1185 62.4
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1458.4 1178 62.1
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1436.4 1175 61.1
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1434.1 1177 60.9
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1431.4 1173 60.6
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1420.6 1185 60.8
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1419.8 1179 61.9
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1416.7 1176 59.9
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 1416.4 1167 60.2
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1415.6 1178 61.0
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1409.8 1179 60.6
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 1409.4 1167 59.7
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1398.3 1205 59.8
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1395.2 1189 59.2
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1394.4 1180 60.6
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1394.0 1178 61.5
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 1387.1 1169 59.3
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1385.9 1167 59.0
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1384.4 1168 59.3
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1384.0 1169 59.4
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1378.6 1167 59.1
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 1377.5 1168 59.0
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1374.8 1164 60.3
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 1359.0 1168 59.8
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1355.9 1180 58.7
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1355.5 1168 58.2
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 1349.0 1170 57.9
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 1345.1 1168 59.2
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1341.3 1180 58.1
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1335.9 1055 63.7
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1335.5 1054 63.7
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 1333.9 1172 57.3
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1333.2 1036 65.2
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 1325.1 1167 57.3
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 0.0e+00 1314.3 1181 56.6
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1309.7 1171 57.4
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1303.1 1175 57.0
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 0.0e+00 1295.8 1122 59.6
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 0.0e+00 1292.3 1135 59.0
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 0.0e+00 1245.3 1169 54.7
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 0.0e+00 1239.9 1185 53.2
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 0.0e+00 1237.6 1189 52.8
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 0.0e+00 1221.5 1116 56.5
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 0.0e+00 1207.2 1215 52.7
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 0.0e+00 1193.7 1169 51.8
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1151.3 1167 53.1
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1114.0 1107 54.4
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 0.0e+00 1102.0 758 72.4
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 8.8e-309 1063.9 839 64.1
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 8.1e-262 907.9 784 60.6
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 4.8e-254 882.1 715 62.7
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 2.3e-248 863.2 1106 45.6
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 1.8e-237 827.0 764 56.4
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 4.1e-221 772.7 1191 39.8
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 3.8e-203 713.0 577 63.1
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 2.4e-189 667.2 1190 36.3
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 3.5e-180 636.7 651 52.8
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 1.0e-176 625.2 432 71.3
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 6.6e-171 605.9 466 64.8
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 2.1e-145 521.2 1112 33.1
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 1.3e-142 511.9 391 65.2
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 2.8e-137 494.2 845 37.4
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 2.9e-126 457.6 432 55.3
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 2.4e-112 411.4 522 41.4
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 3.2e-101 374.4 218 81.2
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 1.3e-94 352.4 419 43.2
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 1.3e-94 352.4 289 60.2
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 7.7e-79 300.1 183 75.4
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 2.9e-70 271.6 204 66.7
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 1.5e-69 269.2 176 77.8
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 6.8e-67 260.4 309 46.0
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-64 252.7 1131 25.9
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 5.6e-53 214.2 231 51.5
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 4.1e-40 171.4 121 72.7
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 6.2e-36 157.5 326 33.7
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 7.3e-29 134.0 151 45.0
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 3.4e-26 125.2 598 24.1
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 3.4e-26 125.2 61 98.4
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 1.3e-20 106.7 470 24.3
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 2.1e-20 105.9 107 55.1
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 2.2e-17 95.9 67 65.7
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 3.9e-14 85.1 53 73.6
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 5.6e-13 81.3 53 73.6
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 2.4e-11 75.9 115 42.6
CDE04G1982 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 5.3e-11 74.7 66 53.0
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 5.3e-11 74.7 77 50.6
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 1.5e-10 73.2 46 71.7
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 2.0e-10 72.8 46 71.7
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 8.4e-09 67.4 64 59.4
arahy.Tifrunner.gnm1.ann1.5RG0UU Arachis hypogaea HOM05D006523 ORTHO05D008212 1.0e-06 60.5 57 57.9
HanXRQChr05g0142631 Helianthus annuus HOM05D001310 ORTHO05D023385 5.1e-06 58.2 130 30.8


User provided reference genes

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