Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 4.8e-166 587.8 303 100.0
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 1.6e-142 509.6 303 88.8
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 1.5e-132 476.5 303 82.5
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 2.5e-130 469.2 303 78.5
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 1.2e-129 466.8 303 78.9
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 1.6e-129 466.5 303 77.9
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 2.3e-128 462.6 305 80.3
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 3.8e-123 445.3 305 76.4
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 3.2e-122 442.2 300 78.0
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 7.9e-121 437.6 300 75.3
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 1.0e-120 437.2 301 75.7
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 2.3e-120 436.0 298 77.2
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 3.9e-120 435.3 303 76.2
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 3.9e-120 435.3 303 76.6
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 6.7e-120 434.5 301 75.4
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 6.7e-120 434.5 301 74.8
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 1.1e-119 433.7 304 77.6
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 1.1e-119 433.7 303 75.9
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 2.0e-119 433.0 302 75.8
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 1.3e-118 430.3 303 74.3
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 1.3e-118 430.3 300 74.0
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 1.3e-118 430.3 302 74.5
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 1.7e-118 429.9 306 74.5
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 3.7e-118 428.7 300 75.0
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 4.8e-118 428.3 300 73.7
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 4.8e-118 428.3 351 67.8
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 2.4e-117 426.0 304 76.3
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 4.1e-117 425.2 301 73.8
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 7.0e-117 424.5 302 75.8
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 7.0e-117 424.5 300 73.0
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 9.1e-117 424.1 300 73.7
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 2.0e-116 422.9 305 72.1
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 2.0e-116 422.9 302 74.2
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 2.6e-116 422.5 304 74.7
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 2.6e-116 422.5 300 74.3
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 4.5e-116 421.8 302 74.2
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 1.0e-115 420.6 300 74.7
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.3e-115 420.2 303 73.9
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 1.3e-115 420.2 304 75.0
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 1.7e-115 419.9 304 74.3
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 2.2e-115 419.5 302 71.9
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 3.8e-115 418.7 303 72.9
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 1.5e-114 416.8 327 67.9
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 1.9e-114 416.4 303 73.3
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 2.5e-114 416.0 302 72.8
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 3.2e-114 415.6 337 69.1
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 9.4e-114 414.1 301 72.4
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 2.1e-113 412.9 321 69.2
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 6.1e-113 411.4 301 72.1
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 8.0e-113 411.0 321 68.8
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 1.0e-112 410.6 329 69.3
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 4.0e-112 408.7 303 71.0
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 6.7e-112 407.9 300 71.0
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 8.8e-112 407.5 280 76.1
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 1.2e-111 407.1 300 71.0
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 5.7e-111 404.8 304 71.7
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 1.7e-110 403.3 304 71.4
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 2.8e-110 402.5 298 72.1
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 3.7e-110 402.1 300 72.0
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 6.3e-110 401.4 280 76.8
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 8.2e-110 401.0 262 79.4
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 3.1e-109 399.1 303 71.3
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 1.6e-108 396.7 304 70.7
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 2.7e-108 396.0 302 70.5
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 7.7e-108 394.4 302 71.2
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 1.7e-107 393.3 294 71.8
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 2.2e-107 392.9 256 80.5
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 1.6e-105 386.7 296 70.3
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 1.6e-105 386.7 296 70.3
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 4.7e-105 385.2 296 68.9
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 6.1e-105 384.8 282 72.0
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 1.4e-104 383.6 300 69.0
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 1.4e-104 383.6 366 59.0
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 1.8e-104 383.3 299 69.2
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 2.3e-104 382.9 296 69.9
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 4.0e-104 382.1 256 78.9
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 2.0e-103 379.8 283 72.4
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 1.3e-102 377.1 368 57.9
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 1.7e-102 376.7 281 73.7
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 1.4e-101 373.6 322 64.9
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 1.6e-100 370.2 342 61.1
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 4.5e-100 368.6 328 64.0
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 1.9e-98 363.2 258 75.2
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 2.5e-98 362.8 303 66.7
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 9.5e-98 360.9 315 66.3
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 1.6e-97 360.1 258 74.4
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 2.1e-97 359.8 256 74.6
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 1.4e-96 357.1 258 74.0
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 2.6e-95 352.8 292 67.8
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 3.7e-94 349.0 301 66.4
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 5.4e-93 345.1 212 81.1
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 1.7e-91 340.1 304 61.8
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 6.6e-91 338.2 320 61.2
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 1.1e-90 337.4 306 65.7
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 1.9e-90 336.7 203 82.8
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 3.3e-90 335.9 371 54.2
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 1.2e-89 334.0 285 63.9
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 1.6e-89 333.6 251 74.1
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 6.1e-89 331.6 235 72.8
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 4.0e-88 328.9 260 67.3
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 5.2e-88 328.6 255 70.6
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 3.4e-87 325.9 332 57.2
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 7.5e-87 324.7 204 80.9
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 7.5e-87 324.7 255 68.2
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 1.3e-86 323.9 247 71.7
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 3.2e-85 319.3 299 62.2
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.7e-84 316.2 331 54.1
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 2.8e-81 306.2 296 57.4
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 2.8e-81 306.2 185 85.4
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 3.6e-81 305.8 257 65.4
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 4.7e-81 305.4 306 58.5
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 4.4e-79 298.9 272 63.2
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 7.5e-79 298.1 246 67.9
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 7.5e-71 271.6 247 59.5
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 7.5e-71 271.6 296 53.0
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 6.4e-70 268.5 351 47.0
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 1.1e-69 267.7 192 68.2
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 1.4e-69 267.3 226 65.9
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 1.6e-68 263.8 165 80.6
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.7e-67 260.4 295 52.2
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 5.2e-64 248.8 154 83.8
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 3.5e-60 236.1 202 64.4
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 6.2e-57 225.3 157 73.9
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 1.7e-51 207.2 129 82.2
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 6.5e-30 135.6 303 32.0
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 6.5e-30 135.6 144 55.6
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 5.7e-26 122.5 334 31.7
VMungo1148G0001 Vigna mungo HOM05D005817 ORTHO05D007140 3.3e-18 96.7 77 67.5
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 6.3e-17 92.4 100 51.0
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 9.1e-16 88.6 329 27.7
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 3.6e-12 76.6 57 66.7
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 3.9e-11 73.2 52 73.1
COL.COLO4_38165 Corchorus olitorius HOM05D011921 ORTHO05D160408 1.1e-08 65.1 181 35.9
Lalb_Chr12g0195851 Lupinus albus HOM05D005817 ORTHO05D007140 3.1e-08 63.5 52 59.6
CARHR145100 Cardamine hirsuta HOM05D005817 ORTHO05D007140 2.0e-07 60.8 74 56.8


User provided reference genes

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