Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 0.0e+00 1560.4 783 100.0
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1120.5 660 84.1
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1117.1 662 84.1
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1113.2 662 83.8
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1110.5 662 83.4
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1106.7 645 84.5
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1102.8 664 82.2
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1100.1 688 79.8
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1098.6 663 82.1
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1091.3 662 81.6
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1088.9 664 81.9
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1086.2 642 83.3
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1085.5 663 81.6
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1085.1 642 83.3
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1084.3 691 79.2
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1082.0 663 81.0
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1079.7 642 83.0
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1079.3 663 81.7
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1076.2 687 78.7
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1076.2 662 81.1
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 2.4e-310 1068.5 662 80.5
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 4.5e-309 1064.3 662 80.2
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 6.5e-308 1060.4 656 80.5
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.4e-307 1059.3 671 79.6
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 7.2e-307 1057.0 671 79.4
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 3.5e-306 1054.7 671 79.7
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 1.3e-305 1052.7 649 79.8
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 1.5e-304 1049.3 650 79.5
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 3.3e-304 1048.1 656 79.6
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 4.3e-304 1047.7 671 78.2
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 7.4e-304 1047.0 668 78.7
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 1.3e-303 1046.2 663 79.3
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 1.6e-303 1045.8 662 78.1
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 1.6e-303 1045.8 640 79.2
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 6.9e-302 1040.4 662 77.6
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 4.5e-301 1037.7 662 77.6
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 3.8e-300 1034.6 633 79.5
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 5.0e-300 1034.2 706 75.8
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 3.2e-299 1031.6 641 79.3
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 4.2e-299 1031.2 636 78.9
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 2.7e-298 1028.5 657 77.3
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 1.4e-297 1026.2 658 76.4
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 1.4e-297 1026.2 654 77.8
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 5.1e-297 1024.2 723 73.0
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 1.5e-296 1022.7 662 76.1
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 1.7e-295 1019.2 663 76.2
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 1.4e-294 1016.1 672 75.6
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 1.5e-293 1012.7 654 75.8
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 2.2e-292 1008.8 690 73.2
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 3.2e-291 1005.0 663 75.7
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 3.2e-291 1005.0 662 75.5
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 2.3e-289 998.8 643 75.4
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 6.7e-289 997.3 657 74.6
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 6.7e-289 997.3 654 76.1
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 2.6e-288 995.3 604 80.0
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 9.7e-288 993.4 674 73.6
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 2.4e-286 988.8 665 75.3
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 4.5e-285 984.6 726 70.0
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 1.2e-282 976.5 689 72.9
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 4.4e-280 968.0 643 75.7
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 7.5e-280 967.2 631 75.6
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 1.7e-279 966.1 598 79.8
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 2.2e-279 965.7 648 74.5
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 1.4e-278 963.0 663 73.2
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 1.4e-278 963.0 649 74.6
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 1.4e-278 963.0 666 73.3
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 2.7e-277 958.7 583 81.3
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 4.5e-277 958.0 656 73.3
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 3.2e-275 951.8 751 66.0
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 1.2e-274 949.9 658 72.5
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 1.8e-273 946.0 669 72.3
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 1.8e-273 946.0 621 74.2
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 1.3e-271 939.9 580 79.3
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 2.8e-271 938.7 663 73.3
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 2.8e-271 938.7 666 72.1
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 7.2e-267 924.1 668 70.8
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 1.5e-264 916.4 666 70.1
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 4.9e-263 911.4 703 66.4
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 2.0e-261 906.0 611 73.2
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 1.3e-260 903.3 610 74.3
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 1.7e-255 886.3 552 79.7
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 3.7e-255 885.2 746 63.5
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 1.8e-254 882.9 536 80.2
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 2.3e-252 875.9 571 75.8
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 2.2e-247 859.4 670 64.9
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 1.4e-238 830.1 662 63.6
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 7.1e-238 827.8 660 63.9
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 1.6e-229 800.0 667 60.0
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 2.1e-229 799.7 684 63.6
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 1.4e-225 786.9 501 78.8
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 5.1e-212 741.9 662 56.9
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 3.8e-207 725.7 457 77.7
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 5.8e-200 701.8 641 57.9
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 6.9e-193 678.3 665 54.4
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 6.9e-177 625.2 620 55.6
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 6.5e-175 618.6 676 51.8
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 1.8e-169 600.5 334 88.0
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 4.1e-169 599.4 604 55.6
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 3.0e-148 530.0 366 71.9
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 3.5e-144 516.5 283 88.3
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.2e-138 497.3 664 47.6
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 2.9e-138 496.9 385 65.2
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 2.1e-125 454.1 277 82.7
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 2.0e-123 447.6 291 78.7
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.3e-118 430.3 294 71.8
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 7.1e-105 386.0 299 69.9
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 4.0e-100 370.2 255 73.3
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 5.1e-95 353.2 234 76.5
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 2.1e-80 304.7 175 84.6
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 1.3e-79 302.0 292 48.6
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 2.9e-74 284.3 217 65.4
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 1.2e-64 252.3 167 73.1
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 6.3e-53 213.4 132 82.6
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 7.0e-52 209.9 142 72.5
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 7.2e-49 199.9 112 84.8
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 1.2e-43 182.6 143 66.4
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 2.7e-43 181.4 140 65.7
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 5.0e-42 177.2 130 66.2
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 7.2e-41 173.3 114 76.3
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 8.3e-37 159.8 208 45.7
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 2.7e-35 154.8 105 72.4
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 1.7e-34 152.1 127 60.6
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 1.7e-34 152.1 148 55.4
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 1.3e-29 136.0 99 69.7
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 1.3e-29 136.0 112 58.9
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 6.3e-29 133.7 86 72.1
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.5e-25 122.5 92 69.6
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 2.3e-23 115.2 84 71.4
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 2.3e-23 115.2 91 70.3
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 2.3e-23 115.2 91 70.3
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 2.4e-20 105.1 132 44.7
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 9.2e-20 103.2 73 69.9
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 1.5e-14 85.9 52 80.8
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 2.2e-13 82.0 109 48.6
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 1.9e-12 79.0 54 70.4
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 1.6e-11 75.9 43 81.4
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 3.0e-10 71.6 55 58.2
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 5.1e-10 70.9 54 70.4
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 5.1e-10 70.9 54 70.4
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 5.1e-10 70.9 54 70.4
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 8.6e-10 70.1 54 70.4
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 4.3e-09 67.8 43 79.1
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 7.3e-09 67.0 54 66.7
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 1.6e-08 65.9 37 78.4
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 6.2e-08 63.9 45 66.7
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 6.8e-07 60.5 29 86.2
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 2.0e-06 58.9 45 62.2


User provided reference genes

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