Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 3.0e-168 595.1 307 100.0
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 9.2e-109 397.5 333 67.0
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 3.8e-102 375.6 314 65.3
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 4.9e-102 375.2 308 66.2
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 2.4e-101 372.9 321 65.4
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 3.2e-101 372.5 309 67.3
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 9.3e-101 370.9 322 65.2
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 1.0e-99 367.5 275 71.6
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 3.9e-99 365.5 246 75.2
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 6.6e-99 364.8 317 63.1
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 3.3e-98 362.5 279 69.2
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 9.6e-98 360.9 274 69.3
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 9.6e-98 360.9 268 69.4
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 1.6e-97 360.1 277 68.6
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 2.1e-97 359.8 315 64.1
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 2.1e-97 359.8 231 77.9
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 1.4e-96 357.1 307 63.2
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 2.4e-96 356.3 304 62.2
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 5.3e-96 355.1 290 66.6
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 5.3e-96 355.1 298 63.8
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 6.9e-96 354.8 292 64.0
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.5e-95 353.6 304 63.5
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 3.4e-95 352.4 292 67.1
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 9.9e-95 350.9 304 62.8
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 1.3e-94 350.5 294 62.6
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 1.7e-94 350.1 281 66.2
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 2.9e-94 349.4 312 63.8
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 4.9e-94 348.6 322 63.0
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 8.4e-94 347.8 300 63.0
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 2.4e-93 346.3 313 59.7
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 2.4e-93 346.3 256 70.3
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 9.3e-93 344.4 269 65.8
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 9.3e-93 344.4 243 71.6
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 1.2e-92 344.0 304 63.5
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.6e-92 343.6 268 66.8
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 1.6e-92 343.6 317 62.1
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 3.5e-92 342.4 295 63.7
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 4.6e-92 342.0 267 66.7
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 6.0e-92 341.7 318 60.4
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 1.0e-91 340.9 258 67.1
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 1.0e-91 340.9 285 64.9
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 1.3e-91 340.5 294 64.3
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 1.3e-91 340.5 274 67.2
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 1.3e-91 340.5 270 64.8
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 1.7e-91 340.1 283 64.0
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 1.7e-91 340.1 305 61.6
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 2.3e-91 339.7 268 66.8
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 2.3e-91 339.7 280 65.0
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 3.0e-91 339.3 271 65.7
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 3.0e-91 339.3 273 66.3
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 3.9e-91 339.0 315 60.0
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 5.1e-91 338.6 281 64.4
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 5.1e-91 338.6 277 65.0
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 6.6e-91 338.2 260 66.9
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 8.7e-91 337.8 263 66.5
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 1.5e-90 337.0 308 60.1
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 1.9e-90 336.7 265 65.3
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 1.9e-90 336.7 271 64.6
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 2.5e-90 336.3 269 69.1
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 3.3e-90 335.9 266 66.5
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 9.6e-90 334.3 236 72.0
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 1.3e-89 334.0 280 65.7
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 1.3e-89 334.0 237 72.2
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 1.3e-89 334.0 316 59.5
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 1.6e-89 333.6 224 74.1
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 1.6e-89 333.6 265 65.3
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 2.1e-89 333.2 245 70.6
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 2.1e-89 333.2 223 74.4
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 2.1e-89 333.2 270 64.4
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 2.8e-89 332.8 238 70.6
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 2.8e-89 332.8 233 70.4
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 2.8e-89 332.8 313 61.7
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 4.8e-89 332.0 240 70.8
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 4.8e-89 332.0 285 64.9
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 6.2e-89 331.6 238 70.2
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 6.2e-89 331.6 251 67.3
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 6.2e-89 331.6 258 64.3
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 1.1e-88 330.9 264 67.4
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 2.4e-88 329.7 317 59.0
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 3.1e-88 329.3 317 58.7
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 4.0e-88 328.9 319 58.6
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 9.9e-87 324.3 261 65.9
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 1.3e-86 323.9 238 68.1
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 2.9e-86 322.8 292 60.3
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 4.9e-86 322.0 287 61.7
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 1.4e-85 320.5 315 59.0
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 1.9e-85 320.1 275 63.3
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 1.2e-84 317.4 314 58.3
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 5.1e-83 312.0 215 75.3
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 6.7e-83 311.6 265 60.8
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 1.1e-82 310.8 303 57.1
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 1.5e-82 310.5 280 61.8
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 4.3e-82 308.9 275 61.5
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 1.2e-79 300.8 268 60.4
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 1.4e-77 293.9 229 65.5
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 1.4e-77 293.9 291 58.8
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 1.9e-77 293.5 270 59.6
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 3.2e-77 292.7 238 64.7
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 4.2e-77 292.4 229 65.9
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 6.3e-73 278.5 215 66.0
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 3.6e-68 262.7 229 61.1
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 1.8e-67 260.4 213 69.0
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 6.7e-67 258.5 203 66.5
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 1.9e-66 256.9 226 61.1
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 3.3e-66 256.1 226 57.5
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 5.7e-66 255.4 198 66.2
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 5.7e-66 255.4 198 66.2
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 9.7e-66 254.6 236 57.2
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 2.6e-63 246.5 210 60.0
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 4.5e-63 245.7 212 60.4
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 7.7e-63 245.0 228 62.3
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.1e-61 241.1 210 60.5
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 1.9e-61 240.4 229 59.8
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 5.5e-61 238.8 245 55.1
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 1.4e-59 234.2 205 58.5
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 1.4e-59 234.2 209 57.4
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 3.7e-57 226.1 162 70.4
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 1.1e-56 224.6 205 59.5
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 2.4e-56 223.4 217 59.0
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 5.9e-55 218.8 160 68.8
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.1e-48 198.0 167 61.7
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 5.7e-34 149.1 202 43.6
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 7.0e-32 142.1 118 62.7
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 9.1e-32 141.7 221 38.5
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.0e-31 140.6 186 45.7
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 1.1e-29 134.8 110 63.6
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 1.3e-25 121.3 221 33.0
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 2.8e-20 103.6 65 75.4
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 2.3e-19 100.5 69 68.1
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 4.4e-18 96.3 82 57.3
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 3.9e-14 83.2 50 76.0
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 4.3e-13 79.7 81 58.0
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 1.4e-11 74.7 46 80.4
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 2.3e-11 73.9 78 55.1
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 2.6e-10 70.5 95 47.4
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 5.8e-10 69.3 102 46.1
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 6.4e-09 65.9 70 57.1
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 8.3e-09 65.5 44 75.0
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 9.2e-08 62.0 50 60.0


User provided reference genes

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