Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0281 Trochodendron aralioides HOM05D005885 ORTHO05D008127 0.0e+00 1090.1 526 100.0
Nn4g26386 Nelumbo nucifera HOM05D005885 ORTHO05D008127 8.0e-262 906.7 526 81.6
CSS0003633 Camellia sinensis var. sinensis HOM05D005885 ORTHO05D008127 5.2e-245 850.9 498 79.7
Cfa012022 Carpinus fangiana HOM05D005885 ORTHO05D008127 3.3e-239 831.6 494 79.6
Atru.chr9.1440 Acer truncatum HOM05D005885 ORTHO05D008127 1.2e-238 829.7 498 77.7
PSO478G5024 Papaver somniferum HOM05D005885 ORTHO05D008127 2.8e-238 828.6 492 79.1
Thecc.03G262500 Theobroma cacao HOM05D005885 ORTHO05D008127 4.7e-238 827.8 496 77.4
Aqoxy7G00633 Aquilegia oxysepala HOM05D005885 ORTHO05D008127 1.4e-237 826.2 496 78.2
CAN.G630.67 Capsicum annuum HOM05D005885 ORTHO05D008127 2.4e-237 825.5 487 78.4
CANSAT21G1830 Cannabis sativa HOM05D005885 ORTHO05D008127 1.5e-236 822.8 508 77.0
Sed0024879 Sechium edule HOM05D005885 ORTHO05D008127 2.6e-236 822.0 487 79.1
QL12p015122 Quercus lobata HOM05D005885 ORTHO05D008127 4.4e-236 821.2 512 77.1
PGSC0003DMG400003932 Solanum tuberosum HOM05D005885 ORTHO05D008127 9.9e-236 820.1 489 77.1
MELO3C005584.2 Cucumis melo HOM05D005885 ORTHO05D008127 2.2e-235 818.9 494 78.1
Duzib205G0406 Durio zibethinus HOM05D005885 ORTHO05D008127 2.2e-235 818.9 496 78.0
Hma1.2p1_0138F.1_g063110 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 2.2e-235 818.9 490 79.0
TWI81G1092 Tripterygium wilfordii HOM05D005885 ORTHO05D008127 6.4e-235 817.4 490 77.8
Manes.01G072400 Manihot esculenta HOM05D005885 ORTHO05D008127 1.4e-234 816.2 482 79.3
Eucgr.D01985 Eucalyptus grandis HOM05D005885 ORTHO05D008127 1.9e-234 815.8 482 78.4
CsaV3_5G003710 Cucumis sativus L. HOM05D005885 ORTHO05D008127 5.4e-234 814.3 475 79.6
Solyc08g079530.3 Solanum lycopersicum HOM05D005885 ORTHO05D008127 1.6e-233 812.8 489 76.9
Cpa.g.sc29.82 Carica papaya HOM05D005885 ORTHO05D008127 4.6e-233 811.2 482 77.6
Gorai.003G166800 Gossypium raimondii HOM05D005885 ORTHO05D008127 6.0e-233 810.8 497 77.1
Sopen08g027900 Solanum pennellii HOM05D005885 ORTHO05D008127 7.8e-233 810.4 489 76.5
Gohir.D03G158300 Gossypium hirsutum HOM05D005885 ORTHO05D008127 1.3e-232 809.7 497 77.1
Lsat_1_v5_gn_6_9740 Lactuca sativa HOM05D005885 ORTHO05D008127 2.3e-232 808.9 500 75.6
MD04G1078900 Malus domestica HOM05D005885 ORTHO05D008127 2.3e-232 808.9 486 78.0
Nitab4.5_0010237g0040 Nicotiana tabacum HOM05D005885 ORTHO05D008127 2.3e-232 808.9 483 78.1
Potri.001G116800 Populus trichocarpa HOM05D005885 ORTHO05D008127 8.7e-232 807.0 488 78.9
ClCG01G003610 Citrullus lanatus HOM05D005885 ORTHO05D008127 1.9e-231 805.8 493 77.1
PGR031G0042 Punica granatum HOM05D005885 ORTHO05D008127 3.3e-231 805.1 487 77.0
Ciclev10019819m.g Citrus clementina HOM05D005885 ORTHO05D008127 5.6e-231 804.3 505 75.4
RcHm_v2.0_Chr7g0201341 Rosa chinensis HOM05D005885 ORTHO05D008127 5.6e-231 804.3 476 78.8
Oeu040058.2 Olea europaea HOM05D005885 ORTHO05D008127 1.3e-230 803.1 494 75.7
Migut.A00839 Erythranthe guttata HOM05D005885 ORTHO05D008127 1.6e-230 802.7 490 76.3
Sabra01G0089600 Salix brachista HOM05D005885 ORTHO05D008127 3.6e-230 801.6 551 71.7
FvH4_5g00790 Fragaria vesca HOM05D005885 ORTHO05D008127 1.1e-229 800.0 480 78.3
FAN08G2136 Fragaria x ananassa HOM05D005885 ORTHO05D000042 3.1e-229 798.5 480 77.7
arahy.Tifrunner.gnm1.ann1.FFRS2J Arachis hypogaea HOM05D005885 ORTHO05D008127 5.3e-229 797.7 493 75.3
Glyma.11G029500 Glycine max HOM05D005885 ORTHO05D008127 3.4e-228 795.0 494 76.5
MSTRG.25552 Avicennia marina HOM05D005885 ORTHO05D008127 7.6e-228 793.9 487 76.2
Nitab4.5_0003534g0090 Nicotiana tabacum HOM05D005885 ORTHO05D008127 9.9e-228 793.5 544 70.0
GSVIVG01004905001 Vitis vinifera HOM05D005885 ORTHO05D008127 1.4e-226 789.6 529 71.8
arahy.Tifrunner.gnm1.ann1.J86H7Q Arachis hypogaea HOM05D005885 ORTHO05D008127 1.9e-226 789.3 494 75.1
Lalb_Chr09g0324521 Lupinus albus HOM05D005885 ORTHO05D008127 1.6e-225 786.2 480 76.5
ECA233G5871 Erigeron canadensis HOM05D005885 ORTHO05D008127 2.7e-225 785.4 490 75.1
VMungo1215G0841 Vigna mungo HOM05D005885 ORTHO05D008127 4.6e-225 784.6 480 76.0
Medtr5g011780 Medicago truncatula HOM05D005885 ORTHO05D008127 1.3e-224 783.1 497 74.2
Psat2g179680 Pisum sativum HOM05D005885 ORTHO05D008127 8.7e-224 780.4 486 74.1
FAN04G1127 Fragaria x ananassa HOM05D005885 ORTHO05D008127 1.9e-223 779.2 508 73.4
CiPaw.11G147000 Carya illinoinensis HOM05D005885 ORTHO05D008127 3.3e-223 778.5 457 80.5
Lj2g0010887 Lotus japonicus HOM05D005885 ORTHO05D008127 3.3e-223 778.5 485 76.3
SalBow6G1575 Salvia bowleyana HOM05D005885 ORTHO05D008127 3.6e-222 775.0 496 74.0
TPR.G19593 Trifolium pratense HOM05D005885 ORTHO05D008127 3.6e-222 775.0 490 74.5
HanXRQChr07g0188641 Helianthus annuus HOM05D005885 ORTHO05D008127 8.1e-222 773.9 453 79.2
CDE12G0141 Ceratophyllum demersum HOM05D005885 ORTHO05D008127 4.0e-221 771.5 509 70.7
AUR62017386 Chenopodium quinoa HOM05D005885 ORTHO05D008127 1.2e-220 770.0 520 70.8
AT1G12370 Arabidopsis thaliana HOM05D005885 ORTHO05D008127 4.5e-220 768.1 491 72.1
THA.LOC104809442 Tarenaya hassleriana HOM05D005885 ORTHO05D008127 4.5e-220 768.1 486 73.7
Dinv37758 Davidia involucrata HOM05D005885 ORTHO05D008127 1.3e-219 766.5 440 82.0
Prupe.5G080300 Prunus persica HOM05D005885 ORTHO05D008127 8.4e-219 763.8 487 75.4
Thhalv10007458m.g Eutrema salsugineum HOM05D005885 ORTHO05D008127 3.5e-217 758.4 487 73.1
Haze_09046 Corylus avellana HOM05D005885 ORTHO05D008127 4.6e-217 758.1 518 71.6
Carub.0001s1203 Capsella rubella HOM05D005885 ORTHO05D008127 6.0e-217 757.7 491 71.7
AL1G23690 Arabidopsis lyrata HOM05D005885 ORTHO05D008127 1.8e-216 756.1 489 71.6
PSO782G2305 Papaver somniferum HOM05D005885 ORTHO05D008127 3.0e-216 755.4 484 74.2
CARHR012660 Cardamine hirsuta HOM05D005885 ORTHO05D008127 1.1e-215 753.4 476 73.5
Sp1g10970 Schrenkiella parvula HOM05D005885 ORTHO05D008127 1.9e-215 752.7 487 72.7
ATR0810G103 Amborella trichopoda HOM05D005885 ORTHO05D008127 4.3e-215 751.5 470 74.3
Aa31LG1G2270 Aethionema arabicum HOM05D005885 ORTHO05D008127 1.6e-214 749.6 476 73.3
SGA_v2.0_scaffold120G32808 Striga asiatica HOM05D005885 ORTHO05D008127 6.2e-214 747.7 520 69.8
MBI04_g35270_MAGBIO Magnolia biondii HOM05D005885 ORTHO05D008127 9.0e-213 743.8 509 72.5
ECA233G1449 Erigeron canadensis HOM05D005885 ORTHO05D008127 8.4e-211 737.3 458 73.6
BolC8t49167H Brassica oleracea HOM05D005885 ORTHO05D008127 1.1e-210 736.9 497 70.2
A08p32870 Brassica napus HOM05D005885 ORTHO05D008127 1.9e-210 736.1 481 70.5
COL.COLO4_23868 Corchorus olitorius HOM05D005885 ORTHO05D008127 2.5e-210 735.7 473 74.0
unitig_744.g24322 Utricularia gibba HOM05D005885 ORTHO05D008127 2.1e-209 732.6 502 69.5
BraA08t35209Z Brassica rapa HOM05D005885 ORTHO05D008127 1.3e-208 729.9 485 70.3
EL10Ac5g12625 Beta vulgaris HOM05D005885 ORTHO05D008127 4.3e-207 724.9 562 64.1
Rhsim07G0193500 Rhododendron simsii HOM05D005885 ORTHO05D008127 2.6e-204 715.7 518 68.1
DCAR_008454 Daucus carota HOM05D005885 ORTHO05D008127 4.6e-201 704.9 501 69.1
Ca_06688_v3 Cicer arietinum L. HOM05D005885 ORTHO05D008127 6.1e-201 704.5 486 68.7
AagrBONN_evm.TU.Sc2ySwM_117.35 Anthoceros agrestis HOM05D005885 ORTHO05D008127 1.5e-199 699.9 478 67.8
Hund11561 Selenicereus undatus HOM05D005885 ORTHO05D008127 3.3e-199 698.7 481 69.0
vmacro00223 Vaccinium macrocarpon HOM05D005885 ORTHO05D008127 4.8e-198 694.9 501 67.9
FAN18G2769 Fragaria x ananassa HOM05D005885 ORTHO05D000042 1.2e-196 690.3 499 69.1
Mapoly0149s0026 Marchantia polymorpha HOM05D005885 ORTHO05D008127 3.7e-190 668.7 475 65.5
Hma1.2p1_0138F.1_g063120 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 7.7e-188 661.0 483 67.9
Pp3c5_3400 Physcomitrium patens HOM05D005885 ORTHO05D008127 1.0e-187 660.6 486 63.8
CBR_g17934 Chara braunii HOM05D005885 ORTHO05D008127 2.7e-185 652.5 463 65.0
SMO137G0163 Selaginella moellendorffii HOM05D005885 ORTHO05D008127 2.6e-183 646.0 477 63.5
Lj8C254T7 Lonicera japonica HOM05D005885 ORTHO05D008127 5.7e-183 644.8 390 79.0
Peaxi162Scf00271g00133 Petunia axillaris HOM05D005885 ORTHO05D008127 2.0e-180 636.3 481 65.7
Cc08_g13300 Coffea canephora HOM05D005885 ORTHO05D008127 8.2e-174 614.4 386 76.9
Gohir.A03G011600 Gossypium hirsutum HOM05D005885 ORTHO05D008127 5.3e-173 611.7 392 74.7
Sc07g0009420 Simmondsia chinensis HOM05D005885 ORTHO05D008127 4.2e-170 602.1 383 73.9
Phvul.002G059800 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 4.7e-169 598.6 386 73.6
C08p15390 Brassica napus HOM05D005885 ORTHO05D008127 8.3e-158 561.2 384 68.8
Cre12.g533000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D008127 5.4e-157 558.5 473 57.3
FAN13G1573 Fragaria x ananassa HOM05D005885 ORTHO05D008127 9.1e-157 557.8 400 67.2
TAR375G0948 Trochodendron aralioides HOM05D005885 ORTHO05D008127 3.6e-153 545.8 256 100.0
Ah.02g116190 Amaranthus hybridus HOM05D005885 ORTHO05D008127 1.8e-152 543.5 360 71.1
MCO01G340 Micromonas commoda HOM05D005885 ORTHO05D008127 1.0e-147 527.7 474 54.6
BcaB03g13192 Brassica carinata HOM05D005885 ORTHO05D008127 2.2e-142 510.0 321 72.3
Actinidia14469 Actinidia chinensis HOM05D005885 ORTHO05D008127 4.1e-141 505.8 352 69.6
MCO16G424 Micromonas commoda HOM05D005885 ORTHO05D008127 1.2e-140 504.2 481 54.9
Actinidia02084 Actinidia chinensis HOM05D005885 ORTHO05D008127 7.8e-132 474.9 366 65.3
Haze_26274 Corylus avellana HOM05D005885 ORTHO05D008127 6.4e-126 455.3 441 49.4
PRCOL_00005710 Prasinoderma coloniale HOM05D005885 ORTHO05D008127 9.6e-122 441.4 475 48.6
HPP92_020977 Vanilla planifolia HOM05D005885 ORTHO05D008127 1.6e-121 440.7 288 69.8
Zm00001eb026960 Zea mays HOM05D005885 ORTHO05D008127 1.4e-120 437.6 383 55.4
SEGI_07453 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 2.9e-118 429.9 281 70.5
Os10g0167600 Oryza sativa ssp. japonica HOM05D005885 ORTHO05D008127 1.7e-107 394.0 366 54.4
Glyma.01G212300 Glycine max HOM05D005885 ORTHO05D008127 5.8e-95 352.4 186 82.8
AUR62010516 Chenopodium quinoa HOM05D005885 ORTHO05D008127 9.7e-74 282.0 163 79.8
TAR375G0547 Trochodendron aralioides HOM05D005885 ORTHO05D008127 1.0e-70 271.9 138 97.8
MCO05G034 Micromonas commoda HOM05D005885 ORTHO05D268017 7.9e-68 262.3 478 36.4
Lj8A254T79 Lonicera japonica HOM05D005885 ORTHO05D008127 1.8e-51 208.0 106 84.9
SEGI_03642 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 2.9e-46 190.7 94 86.2
Cc08_g13290 Coffea canephora HOM05D005885 ORTHO05D008127 1.2e-34 152.1 69 92.8
Phvul.002G151001 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 5.7e-34 149.8 93 72.0
Ah.02g116200 Amaranthus hybridus HOM05D005885 ORTHO05D008127 9.8e-34 149.1 73 86.3
Cre02.g118000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D044175 3.5e-31 140.6 212 38.7
QL09p013714 Quercus lobata HOM05D005885 ORTHO05D008127 1.5e-26 125.2 135 49.6
SEGI_07050 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 8.3e-25 119.4 97 59.8
HanXRQChr10g0306201 Helianthus annuus HOM05D005885 ORTHO05D008127 1.0e-22 112.5 70 75.7
PRCOL_00007238 Prasinoderma coloniale HOM05D005885 ORTHO05D044175 1.3e-22 112.1 199 35.2
COL.COLO4_29220 Corchorus olitorius HOM05D005885 ORTHO05D008127 3.2e-16 90.9 55 80.0
RcHm_v2.0_Chr7g0201231 Rosa chinensis HOM05D005885 ORTHO05D342624 2.2e-09 68.2 48 66.7
BolC1t01666H Brassica oleracea HOM05D005885 ORTHO05D023940 2.3e-06 58.2 50 52.0


User provided reference genes

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