Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 0.0e+00 1176.8 602 100.0
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 7.2e-299 1030.0 598 87.5
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 1.7e-292 1008.8 602 85.5
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 1.1e-291 1006.1 602 83.7
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 4.7e-290 1000.7 626 82.7
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 2.3e-289 998.4 602 83.1
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 2.2e-287 991.9 602 83.2
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 8.3e-287 989.9 602 83.7
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 2.4e-286 988.4 601 83.0
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 4.1e-286 987.6 591 84.9
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 9.1e-286 986.5 603 82.4
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 1.2e-285 986.1 600 82.3
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 1.3e-284 982.6 602 82.6
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 1.3e-284 982.6 601 82.0
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 3.8e-284 981.1 603 82.1
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 1.5e-283 979.2 600 82.3
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 2.5e-283 978.4 600 81.5
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 5.5e-283 977.2 593 82.6
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 8.0e-282 973.4 603 82.1
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 1.4e-281 972.6 594 82.5
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 5.2e-281 970.7 606 80.5
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 8.8e-281 969.9 601 81.4
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 1.2e-280 969.5 614 79.5
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 2.8e-279 964.9 603 80.3
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 8.3e-279 963.4 569 85.2
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 7.0e-278 960.3 602 80.1
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.6e-277 959.1 603 80.4
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 3.8e-276 954.5 600 80.2
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.1e-275 953.0 603 79.4
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.5e-275 952.6 602 79.7
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 2.8e-274 948.3 592 80.7
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 4.7e-274 947.6 602 80.9
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 6.1e-274 947.2 603 79.8
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 1.0e-273 946.4 593 79.8
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 2.0e-272 942.2 591 80.4
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 2.6e-272 941.8 591 80.2
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.6e-272 941.8 601 79.9
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.4e-272 941.4 607 78.9
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 3.4e-272 941.4 602 79.4
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 4.4e-272 941.0 601 79.7
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 7.5e-272 940.3 601 79.4
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 9.8e-272 939.9 593 79.9
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 1.7e-271 939.1 603 78.6
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 3.7e-271 937.9 601 79.2
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 4.9e-271 937.6 603 79.4
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 4.9e-271 937.6 650 74.5
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 1.1e-270 936.4 605 78.7
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.4e-270 935.3 618 77.8
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 4.1e-270 934.5 622 77.3
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 9.2e-270 933.3 601 78.9
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 1.6e-269 932.6 603 76.8
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 2.7e-269 931.8 591 79.4
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 7.8e-269 930.2 603 76.9
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 2.3e-268 928.7 589 79.6
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 2.9e-268 928.3 603 77.3
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 2.9e-268 928.3 659 73.3
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 2.9e-268 928.3 591 79.2
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 2.9e-268 928.3 603 76.5
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 3.9e-268 927.9 603 78.8
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 8.6e-268 926.8 602 77.6
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 2.5e-267 925.2 603 78.1
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 4.3e-267 924.5 603 76.9
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 3.6e-266 921.4 603 76.6
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 8.0e-266 920.2 603 76.9
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 1.8e-265 919.1 600 78.3
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 2.3e-265 918.7 570 82.5
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 3.1e-265 918.3 600 78.5
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 4.0e-265 917.9 592 79.1
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 6.8e-265 917.1 622 75.6
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 8.9e-265 916.8 603 75.5
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 5.8e-264 914.1 598 78.3
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 1.3e-263 912.9 598 76.3
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 3.7e-263 911.4 600 76.7
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 8.3e-263 910.2 596 76.3
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 1.1e-262 909.8 594 76.9
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.4e-262 909.4 600 76.5
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 3.2e-262 908.3 598 75.9
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 5.4e-262 907.5 600 75.3
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 4.6e-261 904.4 605 76.7
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 1.0e-260 903.3 598 75.1
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 6.6e-260 900.6 599 75.1
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 8.6e-260 900.2 598 75.3
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 8.6e-260 900.2 598 74.7
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 8.6e-260 900.2 683 69.5
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 1.9e-259 899.0 598 74.6
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 1.9e-259 899.0 600 75.7
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 3.3e-259 898.3 598 74.4
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 3.3e-259 898.3 598 74.4
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 3.3e-259 898.3 598 74.4
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.6e-258 896.0 625 73.9
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 2.8e-258 895.2 594 74.9
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 6.2e-258 894.0 596 75.0
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.1e-257 893.3 601 77.0
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 2.3e-257 892.1 603 74.6
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 4.4e-256 887.9 599 75.0
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 3.7e-255 884.8 598 74.2
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 4.9e-255 884.4 596 75.0
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.9e-252 874.8 570 78.4
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 2.1e-250 869.0 550 80.5
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 8.1e-250 867.1 563 77.4
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 4.4e-248 861.3 504 86.7
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 9.9e-248 860.1 595 75.0
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 1.4e-246 856.3 626 70.3
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 1.2e-245 853.2 548 78.1
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 3.5e-245 851.7 600 74.5
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.9e-243 845.9 583 75.5
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 3.6e-242 841.6 583 75.1
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 6.4e-239 830.9 615 71.1
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 5.6e-235 817.8 640 68.1
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 2.4e-230 802.4 591 68.4
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.1e-229 799.3 601 70.0
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 7.9e-229 797.3 657 63.0
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 5.6e-227 791.2 599 67.4
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 2.4e-225 785.8 494 80.0
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.5e-224 783.1 479 83.1
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.6e-213 746.5 477 78.0
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.1e-209 732.3 504 76.4
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 3.1e-201 705.7 541 69.9
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 7.7e-192 674.5 442 76.9
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 2.7e-189 666.0 427 78.0
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 4.8e-178 628.6 607 54.7
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 4.7e-173 612.1 597 53.6
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 1.4e-172 610.5 570 54.7
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 9.8e-171 604.4 436 69.7
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 4.3e-150 535.8 418 66.5
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 2.6e-147 526.6 336 81.5
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 7.5e-147 525.0 367 72.8
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 5.0e-143 512.3 605 47.1
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 2.7e-136 490.0 576 47.0
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.3e-135 487.6 314 78.3
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.0e-131 473.8 532 52.4
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 3.3e-126 456.4 318 77.4
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 6.2e-125 452.2 288 80.2
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 4.8e-117 426.0 248 85.9
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 2.2e-114 417.2 437 54.2
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 4.9e-114 416.0 281 75.1
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.0e-95 355.1 273 67.8
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 3.1e-76 290.4 681 32.2
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.4e-71 275.0 181 79.6
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 1.6e-67 261.5 556 32.6
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 2.0e-62 244.6 153 78.4
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 1.3e-58 231.9 145 81.4
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 6.5e-58 229.6 142 82.4
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 7.0e-44 183.0 149 65.8
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.6e-43 181.8 120 77.5
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 2.5e-41 174.5 612 27.3
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 7.3e-33 146.4 96 76.0
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 4.7e-32 143.7 120 56.7
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.5e-30 138.7 186 42.5
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 1.3e-29 135.6 98 66.3
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 2.0e-27 128.3 74 83.8
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 4.6e-27 127.1 99 59.6
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.6e-22 111.3 66 81.8
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 1.7e-21 108.6 67 71.6
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 1.9e-20 105.1 629 24.2
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 5.4e-20 103.6 82 58.5
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.6e-16 90.9 95 54.7
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 6.8e-15 86.7 49 81.6
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 1.2e-14 85.9 75 52.0
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 3.4e-14 84.3 48 81.2
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 1.7e-13 82.0 199 31.2
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 1.3e-10 72.4 61 63.9
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 2.3e-10 71.6 53 71.7
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 6.6e-10 70.1 53 69.8
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 9.0e-07 59.7 54 57.4
COL.COLO4_03746 Corchorus olitorius HOM05D004329 ORTHO05D155270 7.6e-06 56.6 29 86.2


User provided reference genes

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