Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0758 Trochodendron aralioides HOM05D006212 ORTHO05D030889 1.8e-96 355.9 178 100.0
TAR369G0250 Trochodendron aralioides HOM05D006212 ORTHO05D008245 3.2e-13 79.3 43 86.0
Nn6g35226 Nelumbo nucifera HOM05D006212 ORTHO05D008245 6.1e-12 75.1 47 76.6
Aqoxy1G01105 Aquilegia oxysepala HOM05D006212 ORTHO05D008245 8.0e-12 74.7 100 42.0
Sc06g0002110 Simmondsia chinensis HOM05D006212 ORTHO05D008245 2.3e-11 73.2 63 57.1
Ciclev10031035m.g Citrus clementina HOM05D006212 ORTHO05D008245 3.0e-11 72.8 45 73.3
PSO339G2669 Papaver somniferum HOM05D006212 ORTHO05D008245 5.2e-11 72.0 65 55.4
Atru.chr12.885 Acer truncatum HOM05D006212 ORTHO05D008245 6.7e-11 71.6 45 75.6
TWI38G1180 Tripterygium wilfordii HOM05D006212 ORTHO05D008245 8.8e-11 71.2 43 74.4
Sed0020526 Sechium edule HOM05D006212 ORTHO05D008245 1.1e-10 70.9 47 72.3
MD01G1100100 Malus domestica HOM05D006212 ORTHO05D008245 2.6e-10 69.7 43 74.4
Prupe.2G205800 Prunus persica HOM05D006212 ORTHO05D008245 4.4e-10 68.9 45 71.1
GSVIVG01016183001 Vitis vinifera HOM05D006212 ORTHO05D008245 5.7e-10 68.6 45 75.6
Cfa001784 Carpinus fangiana HOM05D006212 ORTHO05D008245 7.4e-10 68.2 43 72.1
THA.LOC104816441 Tarenaya hassleriana HOM05D006212 ORTHO05D008245 7.4e-10 68.2 58 62.1
Actinidia35775 Actinidia chinensis HOM05D006212 ORTHO05D008245 9.7e-10 67.8 45 71.1
Cpa.g.sc53.156 Carica papaya HOM05D006212 ORTHO05D008245 9.7e-10 67.8 43 74.4
Oeu016301.1 Olea europaea HOM05D006212 ORTHO05D008245 1.3e-09 67.4 58 60.3
Ca_10444_v3 Cicer arietinum L. HOM05D006212 ORTHO05D008245 1.7e-09 67.0 58 58.6
Cc02_g10690 Coffea canephora HOM05D006212 ORTHO05D008245 1.7e-09 67.0 43 74.4
Haze_16761 Corylus avellana HOM05D006212 ORTHO05D008245 1.7e-09 67.0 43 72.1
Potri.010G229300 Populus trichocarpa HOM05D006212 ORTHO05D008245 2.2e-09 66.6 43 72.1
CiPaw.01G266400 Carya illinoinensis HOM05D006212 ORTHO05D008245 2.8e-09 66.2 43 72.1
Manes.10G051700 Manihot esculenta HOM05D006212 ORTHO05D008245 2.8e-09 66.2 45 75.6
ATR0329G025 Amborella trichopoda HOM05D006212 ORTHO05D008245 3.7e-09 65.9 47 66.0
QL08p053276 Quercus lobata HOM05D006212 ORTHO05D008245 4.8e-09 65.5 43 72.1
C09p72430 Brassica napus HOM05D006212 ORTHO05D008245 6.3e-09 65.1 45 64.4
DCAR_019069 Daucus carota HOM05D006212 ORTHO05D008245 6.3e-09 65.1 47 63.8
Phvul.007G139400 Phaseolus vulgaris HOM05D006212 ORTHO05D008245 6.3e-09 65.1 58 55.2
Sabra10G0177800 Salix brachista HOM05D006212 ORTHO05D008245 6.3e-09 65.1 43 69.8
arahy.Tifrunner.gnm1.ann1.KY2C4A Arachis hypogaea HOM05D006212 ORTHO05D008245 8.2e-09 64.7 47 63.8
arahy.Tifrunner.gnm1.ann1.MYE0E1 Arachis hypogaea HOM05D006212 ORTHO05D008245 8.2e-09 64.7 47 63.8
Solyc11g008050.1 Solanum lycopersicum HOM05D006212 ORTHO05D008245 8.2e-09 64.7 45 66.7
Sopen11g003910 Solanum pennellii HOM05D006212 ORTHO05D008245 8.2e-09 64.7 45 66.7
TPR.G37858 Trifolium pratense HOM05D006212 ORTHO05D008245 8.2e-09 64.7 47 66.0
ClCG05G021340 Citrullus lanatus HOM05D006212 ORTHO05D008245 1.1e-08 64.3 45 66.7
Nitab4.5_0004987g0060 Nicotiana tabacum HOM05D006212 ORTHO05D008245 1.1e-08 64.3 45 66.7
Psat6g175360 Pisum sativum HOM05D006212 ORTHO05D008245 1.1e-08 64.3 47 66.0
CAN.G459.26 Capsicum annuum HOM05D006212 ORTHO05D008245 1.4e-08 63.9 45 66.7
Lj5g0009189 Lotus japonicus HOM05D006212 ORTHO05D008245 1.4e-08 63.9 47 63.8
Peaxi162Scf00982g00216 Petunia axillaris HOM05D006212 ORTHO05D008245 1.4e-08 63.9 45 64.4
Sp6g38370 Schrenkiella parvula HOM05D006212 ORTHO05D008245 1.4e-08 63.9 43 69.8
AL6G14000 Arabidopsis lyrata HOM05D006212 ORTHO05D008245 1.8e-08 63.5 43 69.8
COL.COLO4_09860 Corchorus olitorius HOM05D006212 ORTHO05D008245 1.8e-08 63.5 43 67.4
Dinv31247 Davidia involucrata HOM05D006212 ORTHO05D008245 1.8e-08 63.5 45 66.7
Lalb_Chr21g0312911 Lupinus albus HOM05D006212 ORTHO05D008245 1.8e-08 63.5 47 63.8
AT5G04360 Arabidopsis thaliana HOM05D006212 ORTHO05D008245 2.4e-08 63.2 43 69.8
CsaV3_5G035900 Cucumis sativus L. HOM05D006212 ORTHO05D008245 2.4e-08 63.2 45 66.7
Ah.08g209700 Amaranthus hybridus HOM05D006212 ORTHO05D008245 3.1e-08 62.8 65 50.8
BcaC06g32141 Brassica carinata HOM05D006212 ORTHO05D008245 3.1e-08 62.8 44 65.9
AUR62029688 Chenopodium quinoa HOM05D006212 ORTHO05D008245 3.1e-08 62.8 61 54.1
Thhalv10012585m.g Eutrema salsugineum HOM05D006212 ORTHO05D008245 3.1e-08 62.8 43 69.8
FAN10G1668 Fragaria x ananassa HOM05D006212 ORTHO05D008245 3.1e-08 62.8 44 61.4
Thecc.10G087900 Theobroma cacao HOM05D006212 ORTHO05D008245 3.1e-08 62.8 43 67.4
A10p31730 Brassica napus HOM05D006212 ORTHO05D008245 4.1e-08 62.4 44 65.9
Carub.0006s0331 Capsella rubella HOM05D006212 ORTHO05D008245 4.1e-08 62.4 43 67.4
AUR62006360 Chenopodium quinoa HOM05D006212 ORTHO05D008245 4.1e-08 62.4 61 54.1
Duzib114G0641 Durio zibethinus HOM05D006212 ORTHO05D008245 4.1e-08 62.4 43 67.4
Eucgr.G02746 Eucalyptus grandis HOM05D006212 ORTHO05D008245 4.1e-08 62.4 55 56.4
Gohir.D05G290200 Gossypium hirsutum HOM05D006212 ORTHO05D008245 4.1e-08 62.4 45 66.7
RcHm_v2.0_Chr1g0362181 Rosa chinensis HOM05D006212 ORTHO05D008245 4.1e-08 62.4 43 65.1
Aa31LG11G5260 Aethionema arabicum HOM05D006212 ORTHO05D008245 5.3e-08 62.0 43 67.4
FvH4_7g18370 Fragaria vesca HOM05D006212 ORTHO05D008245 5.3e-08 62.0 43 62.8
FAN06G0602 Fragaria x ananassa HOM05D006212 ORTHO05D008245 5.3e-08 62.0 43 62.8
FAN06G2367 Fragaria x ananassa HOM05D006212 ORTHO05D008245 5.3e-08 62.0 43 62.8
FAN10G3474 Fragaria x ananassa HOM05D006212 ORTHO05D008245 5.3e-08 62.0 43 62.8
vmacro10255 Vaccinium macrocarpon HOM05D006212 ORTHO05D008245 5.3e-08 62.0 45 66.7
Mapoly0043s0011 Marchantia polymorpha HOM05D006212 ORTHO05D008245 7.0e-08 61.6 45 57.8
Nitab4.5_0007723g0030 Nicotiana tabacum HOM05D006212 ORTHO05D008245 7.0e-08 61.6 45 64.4
Rhsim09G0146100 Rhododendron simsii HOM05D006212 ORTHO05D008245 7.0e-08 61.6 45 66.7
Hund19796 Selenicereus undatus HOM05D006212 ORTHO05D008245 7.0e-08 61.6 43 67.4
FAN03G1155 Fragaria x ananassa HOM05D006212 ORTHO05D008245 9.1e-08 61.2 43 60.5
CARHR208930 Cardamine hirsuta HOM05D006212 ORTHO05D008245 1.2e-07 60.8 43 69.8
MELO3C034031.2 Cucumis melo HOM05D006212 ORTHO05D008245 1.2e-07 60.8 45 62.2
ECA238G3613 Erigeron canadensis HOM05D006212 ORTHO05D008245 1.2e-07 60.8 47 57.4
VMungo0720G1989 Vigna mungo HOM05D006212 ORTHO05D008245 1.2e-07 60.8 47 59.6
FAN01G0990 Fragaria x ananassa HOM05D006212 ORTHO05D008245 1.6e-07 60.5 43 62.8
Gorai.009G305300 Gossypium raimondii HOM05D006212 ORTHO05D008245 1.6e-07 60.5 45 64.4
Zm00001eb088740 Zea mays HOM05D006212 ORTHO05D008245 1.6e-07 60.5 43 67.4
BolC9t59986H Brassica oleracea HOM05D006212 ORTHO05D008245 2.0e-07 60.1 44 61.4
EL10Ac7g17062 Beta vulgaris HOM05D006212 ORTHO05D008245 2.6e-07 59.7 43 65.1
Lj2C23T6 Lonicera japonica HOM05D006212 ORTHO05D008245 2.6e-07 59.7 38 73.7
SalBow4G3289 Salvia bowleyana HOM05D006212 ORTHO05D008245 2.6e-07 59.7 45 60.0
Actinidia15140 Actinidia chinensis HOM05D006212 ORTHO05D030889 4.5e-07 58.9 47 59.6
MSTRG.27497 Avicennia marina HOM05D006212 ORTHO05D008245 4.5e-07 58.9 58 48.3
Glyma.10G197000 Glycine max HOM05D006212 ORTHO05D008245 4.5e-07 58.9 47 59.6
SEGI_29889 Sequoiadendron giganteum HOM05D006212 ORTHO05D008245 4.5e-07 58.9 58 48.3
HanXRQChr14g0455751 Helianthus annuus HOM05D006212 ORTHO05D008245 5.9e-07 58.5 45 60.0
Lsat_1_v5_gn_2_103740 Lactuca sativa HOM05D006212 ORTHO05D008245 5.9e-07 58.5 45 60.0
Medtr1g090693 Medicago truncatula HOM05D006212 ORTHO05D008245 1.0e-06 57.8 47 59.6
Gohir.A05G289000 Gossypium hirsutum HOM05D006212 ORTHO05D008245 1.3e-06 57.4 45 62.2
Actinidia13523 Actinidia chinensis HOM05D006212 ORTHO05D030889 2.9e-06 56.2 47 59.6


User provided reference genes

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