Gene: Sopen11g003910

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g003910
  • Transcript Identifier Sopen11g003910.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 2402507-2416260 : negative

Gene Family Information

  • ID HOM05D006212
  • #Genes/#Species 128/91
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g003910.1

Descriptions

  • Description Encodes an enzyme thought to be involved in the hydrolysis of the, #945, -1,6 linkages during starch degradation in seed endosperm. However, a knockout mutant of Arabidopsis lacking limit dextrinase has normal rates of starch degradation in the leaf at night, indicating that more than one isoamylases might be involved in this process. | limit dextrinase (LDA) | FUNCTIONS IN: limit dextrinase activity, pullulanase activity, alpha-amylase activity | INVOLVED IN: starch biosynthetic process, carbohydrate metabolic process, starch catabolic process | LOCATED IN: chloroplast | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Alpha-1,6-glucosidases, pullulanase-type , Immunoglobulin E-set , Glycoside hydrolase, family 13, N-terminal , Glycoside hydrolase, catalytic core , Glycoside hydrolase, subgroup, catalytic core , Glycosyl hydrolase, family 13, catalytic domain | BEST Arabidopsis thaliana protein match is: isoamylase 3
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0019252
ISO
PLAZA Integrative Orthologystarch biosynthetic process AT5G04360
GO:0005983
ISO
PLAZA Integrative Orthologystarch catabolic process AT5G04360

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004553
IEA
InterProhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0051060
IEA
InterPropullulanase activity
GO:0010303
ISO
PLAZA Integrative Orthologylimit dextrinase activity AT5G04360

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT5G04360
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT5G04360

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004193 Glycoside hydrolase, family 13, N-terminal
IPR024561 Alpha-1,6-glucosidases, pullulanase-type, C-terminal
IPR017853 Glycoside hydrolase superfamily
IPR014756 Immunoglobulin E-set
IPR013780 Glycosyl hydrolase, all-beta
IPR040671 Pullulanase, N2 domain
IPR013783 Immunoglobulin-like fold
IPR011839 Alpha-1,6-glucosidases, pullulanase-type
IPR045041 Pullulanase PULA-like
Mapman id Description
3.2.3.3.2.2 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.pullulanase (PU1)