Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0510 Trochodendron aralioides HOM05D003321 ORTHO05D414592 2.0e-155 552.4 274 100.0
Duzib147G1608 Durio zibethinus HOM05D003321 ORTHO05D005161 9.9e-46 188.0 266 44.7
Hma1.2p1_0247F.1_g101800 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 1.2e-43 181.0 271 43.9
TAR622G1354 Trochodendron aralioides HOM05D003321 ORTHO05D005161 2.7e-43 179.9 318 39.0
Actinidia06077 Actinidia chinensis HOM05D003321 ORTHO05D005161 1.8e-42 177.2 319 39.2
Actinidia23569 Actinidia chinensis HOM05D003321 ORTHO05D005161 1.1e-41 174.5 189 55.0
RhsimUnG0055900 Rhododendron simsii HOM05D003321 ORTHO05D005161 1.1e-41 174.5 322 38.5
Nn4g23059 Nelumbo nucifera HOM05D003321 ORTHO05D005161 1.5e-41 174.1 190 55.8
CSS0001778 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 1.9e-41 173.7 319 37.6
Manes.15G172400 Manihot esculenta HOM05D003321 ORTHO05D005161 1.9e-41 173.7 317 37.9
CDE05G0865 Ceratophyllum demersum HOM05D003321 ORTHO05D005161 2.5e-41 173.3 296 38.9
Atru.chr8.1903 Acer truncatum HOM05D003321 ORTHO05D005161 4.3e-41 172.6 322 37.9
Dinv33721 Davidia involucrata HOM05D003321 ORTHO05D005161 4.3e-41 172.6 190 54.2
Gohir.A11G069100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 1.6e-40 170.6 189 53.4
Gohir.D11G073100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 1.6e-40 170.6 189 53.4
Gorai.007G078500 Gossypium raimondii HOM05D003321 ORTHO05D005161 1.6e-40 170.6 189 53.4
Manes.15G176600 Manihot esculenta HOM05D003321 ORTHO05D005161 4.8e-40 169.1 189 51.9
GSVIVG01011349001 Vitis vinifera HOM05D003321 ORTHO05D005161 6.2e-40 168.7 189 52.4
Gohir.D09G021100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 1.8e-39 167.2 189 51.9
Lju41A25T61 Lonicera japonica HOM05D003321 ORTHO05D005161 1.8e-39 167.2 189 52.9
Gohir.A09G021800 Gossypium hirsutum HOM05D003321 ORTHO05D005161 2.4e-39 166.8 189 51.3
Thecc.04G075500 Theobroma cacao HOM05D003321 ORTHO05D005161 3.1e-39 166.4 189 51.9
Haze_14579 Corylus avellana HOM05D003321 ORTHO05D005161 6.9e-39 165.2 189 51.3
Duzib264G0140 Durio zibethinus HOM05D003321 ORTHO05D005161 1.5e-38 164.1 189 51.3
Potri.004G124000 Populus trichocarpa HOM05D003321 ORTHO05D005161 2.6e-38 163.3 317 37.5
QL02p080714 Quercus lobata HOM05D003321 ORTHO05D005161 2.6e-38 163.3 189 51.9
Ciclev10011266m.g Citrus clementina HOM05D003321 ORTHO05D005161 3.4e-38 162.9 318 36.5
DCAR_011159 Daucus carota HOM05D003321 ORTHO05D005161 5.8e-38 162.2 189 51.9
Potri.017G078500 Populus trichocarpa HOM05D003321 ORTHO05D005161 7.6e-38 161.8 317 36.6
ClCG10G014840 Citrullus lanatus HOM05D003321 ORTHO05D005161 1.7e-37 160.6 189 50.3
COL.COLO4_25165 Corchorus olitorius HOM05D003321 ORTHO05D005161 1.7e-37 160.6 189 49.7
MELO3C009890.2 Cucumis melo HOM05D003321 ORTHO05D005161 1.7e-37 160.6 189 50.3
HanXRQChr16g0519581 Helianthus annuus HOM05D003321 ORTHO05D005161 2.2e-37 160.2 189 50.3
PGR142G0788 Punica granatum HOM05D003321 ORTHO05D005161 2.2e-37 160.2 189 50.3
CiPaw.04G019600 Carya illinoinensis HOM05D003321 ORTHO05D005161 2.9e-37 159.8 189 49.7
Sabra17G0069700 Salix brachista HOM05D003321 ORTHO05D005161 3.8e-37 159.5 189 50.8
CsaV3_3G041690 Cucumis sativus L. HOM05D003321 ORTHO05D005161 4.9e-37 159.1 189 49.7
Phvul.011G212400 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 1.1e-36 157.9 316 35.8
Gorai.006G024900 Gossypium raimondii HOM05D003321 ORTHO05D005161 1.4e-36 157.5 212 46.2
Lj7A400T32 Lonicera japonica HOM05D003321 ORTHO05D005161 1.9e-36 157.1 190 51.1
CiPaw.03G029600 Carya illinoinensis HOM05D003321 ORTHO05D005161 4.2e-36 156.0 189 49.2
ATR1120G139 Amborella trichopoda HOM05D003321 ORTHO05D005161 5.5e-36 155.6 192 49.0
arahy.Tifrunner.gnm1.ann1.T0AAPV Arachis hypogaea HOM05D003321 ORTHO05D005161 5.5e-36 155.6 307 35.5
CANSAT64G1196 Cannabis sativa HOM05D003321 ORTHO05D005161 5.5e-36 155.6 189 48.1
Glyma.03G031900 Glycine max HOM05D003321 ORTHO05D005161 5.5e-36 155.6 316 35.4
Glyma.13G064800 Glycine max HOM05D003321 ORTHO05D005161 5.5e-36 155.6 316 35.4
Lsat_1_v5_gn_2_88641 Lactuca sativa HOM05D003321 ORTHO05D005161 5.5e-36 155.6 190 50.5
VMungo1127G1679 Vigna mungo HOM05D003321 ORTHO05D005161 5.5e-36 155.6 316 34.8
Oeu037176.3 Olea europaea HOM05D003321 ORTHO05D005161 9.3e-36 154.8 189 49.2
Prupe.3G271500 Prunus persica HOM05D003321 ORTHO05D005161 2.1e-35 153.7 320 35.0
VMungo0464G0737 Vigna mungo HOM05D003321 ORTHO05D005161 2.1e-35 153.7 316 35.1
Glyma.01G136100 Glycine max HOM05D003321 ORTHO05D005161 2.7e-35 153.3 316 34.8
Sed0022026 Sechium edule HOM05D003321 ORTHO05D005161 2.7e-35 153.3 189 48.7
Ca_13366_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 4.6e-35 152.5 317 35.0
Phvul.004G026200 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 6.0e-35 152.1 316 34.5
Lsat_1_v5_gn_4_46121 Lactuca sativa HOM05D003321 ORTHO05D005161 7.9e-35 151.8 190 48.9
TWI60G1051 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 7.9e-35 151.8 188 49.5
Ca_05956_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 1.0e-34 151.4 319 34.8
ECA234G3709 Erigeron canadensis HOM05D003321 ORTHO05D005161 1.3e-34 151.0 189 47.6
Medtr1g022345 Medicago truncatula HOM05D003321 ORTHO05D005161 1.8e-34 150.6 189 47.6
TWI34G1126 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 1.8e-34 150.6 189 48.1
Psat2g033240 Pisum sativum HOM05D003321 ORTHO05D005161 5.1e-34 149.1 189 47.1
TPR.G20170 Trifolium pratense HOM05D003321 ORTHO05D005161 5.1e-34 149.1 190 47.9
Lalb_Chr06g0175461 Lupinus albus HOM05D003321 ORTHO05D005161 8.7e-34 148.3 189 47.1
Eucgr.I01920 Eucalyptus grandis HOM05D003321 ORTHO05D005161 1.9e-33 147.1 188 48.9
Lj2g0002473 Lotus japonicus HOM05D003321 ORTHO05D005161 1.9e-33 147.1 317 34.1
Lalb_Chr02g0159551 Lupinus albus HOM05D003321 ORTHO05D005161 1.9e-33 147.1 189 47.1
Medtr5g082570 Medicago truncatula HOM05D003321 ORTHO05D005161 3.3e-33 146.4 189 46.0
THA.LOC104805449 Tarenaya hassleriana HOM05D003321 ORTHO05D005161 3.3e-33 146.4 189 47.1
HanXRQChr02g0056421 Helianthus annuus HOM05D003321 ORTHO05D005161 9.6e-33 144.8 191 47.6
Thhalv10003803m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 2.8e-32 143.3 190 45.8
arahy.Tifrunner.gnm1.ann1.QM6JB0 Arachis hypogaea HOM05D003321 ORTHO05D005161 3.7e-32 142.9 190 45.8
CAN.G206.123 Capsicum annuum HOM05D003321 ORTHO05D005161 3.7e-32 142.9 189 46.6
TPR.G38431 Trifolium pratense HOM05D003321 ORTHO05D005161 3.7e-32 142.9 320 34.1
AUR62032308 Chenopodium quinoa HOM05D003321 ORTHO05D005161 4.8e-32 142.5 264 37.9
Sp2g17380 Schrenkiella parvula HOM05D003321 ORTHO05D005161 4.8e-32 142.5 190 45.8
BcaC03g17525 Brassica carinata HOM05D003321 ORTHO05D005161 1.4e-31 141.0 190 45.3
A02p36020 Brassica napus HOM05D003321 ORTHO05D005161 1.4e-31 141.0 190 45.3
C02p54860 Brassica napus HOM05D003321 ORTHO05D005161 1.4e-31 141.0 190 45.3
BraA02t08601Z Brassica rapa HOM05D003321 ORTHO05D005161 1.4e-31 141.0 190 45.3
SEGI_27754 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 1.4e-31 141.0 192 44.3
BcaC06g30900 Brassica carinata HOM05D003321 ORTHO05D005161 1.8e-31 140.6 189 45.5
BcaC06g33636 Brassica carinata HOM05D003321 ORTHO05D005161 2.4e-31 140.2 189 45.5
BolC7t44284H Brassica oleracea HOM05D003321 ORTHO05D005161 2.4e-31 140.2 189 45.5
Carub.0005s0728 Capsella rubella HOM05D003321 ORTHO05D005161 2.4e-31 140.2 190 45.3
ECA238G2291 Erigeron canadensis HOM05D003321 ORTHO05D005161 2.4e-31 140.2 188 47.3
PGSC0003DMG400018099 Solanum tuberosum HOM05D003321 ORTHO05D005161 2.4e-31 140.2 189 45.5
BcaB07g30122 Brassica carinata HOM05D003321 ORTHO05D005161 3.1e-31 139.8 190 44.7
AUR62011989 Chenopodium quinoa HOM05D003321 ORTHO05D005161 3.1e-31 139.8 265 37.0
Solyc02g087710.3 Solanum lycopersicum HOM05D003321 ORTHO05D005161 3.1e-31 139.8 189 45.5
Sopen02g032440 Solanum pennellii HOM05D003321 ORTHO05D005161 3.1e-31 139.8 189 45.5
PGSC0003DMG400001414 Solanum tuberosum HOM05D003321 ORTHO05D005161 3.1e-31 139.8 189 45.5
BolC2t11547H Brassica oleracea HOM05D003321 ORTHO05D005161 4.0e-31 139.4 190 44.7
Sc17g0001240 Simmondsia chinensis HOM05D003321 ORTHO05D005161 4.0e-31 139.4 191 46.6
C07p37670 Brassica napus HOM05D003321 ORTHO05D005161 5.3e-31 139.0 189 45.0
SEGI_13423 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 5.3e-31 139.0 194 43.8
Hund02846 Selenicereus undatus HOM05D003321 ORTHO05D005161 1.2e-30 137.9 193 44.6
A06p40380 Brassica napus HOM05D003321 ORTHO05D005161 1.5e-30 137.5 189 45.0
BraA06t26956Z Brassica rapa HOM05D003321 ORTHO05D005161 1.5e-30 137.5 189 45.0
MD09G1047500 Malus domestica HOM05D003321 ORTHO05D005161 2.0e-30 137.1 190 45.3
MD17G1047600 Malus domestica HOM05D003321 ORTHO05D005161 2.0e-30 137.1 190 45.3
PSO832G3448 Papaver somniferum HOM05D003321 ORTHO05D005161 2.0e-30 137.1 320 34.7
Aa31LG2G4470 Aethionema arabicum HOM05D003321 ORTHO05D005161 2.6e-30 136.7 190 43.7
FAN14G0823 Fragaria x ananassa HOM05D003321 ORTHO05D005161 2.6e-30 136.7 319 32.3
Peaxi162Scf00129g00539 Petunia axillaris HOM05D003321 ORTHO05D005161 2.6e-30 136.7 307 33.9
AT3G28730 Arabidopsis thaliana HOM05D003321 ORTHO05D005161 3.4e-30 136.3 190 44.2
Lj2g0024928 Lotus japonicus HOM05D003321 ORTHO05D005161 3.4e-30 136.3 313 32.6
HPP92_017969 Vanilla planifolia HOM05D003321 ORTHO05D005161 3.4e-30 136.3 193 44.6
Aqoxy3G03281 Aquilegia oxysepala HOM05D003321 ORTHO05D005161 4.5e-30 136.0 317 33.4
unitig_899.g15507 Utricularia gibba HOM05D003321 ORTHO05D005161 4.5e-30 136.0 194 44.8
FvH4_6g49210 Fragaria vesca HOM05D003321 ORTHO05D005161 5.8e-30 135.6 319 32.3
PSO591G0346 Papaver somniferum HOM05D003321 ORTHO05D005161 5.8e-30 135.6 192 46.9
Psat6g008440 Pisum sativum HOM05D003321 ORTHO05D005161 5.8e-30 135.6 209 42.1
RcHm_v2.0_Chr2g0169081 Rosa chinensis HOM05D003321 ORTHO05D005161 5.8e-30 135.6 190 44.2
Nitab4.5_0003314g0110 Nicotiana tabacum HOM05D003321 ORTHO05D005161 1.0e-29 134.8 189 44.4
Mapoly0030s0009 Marchantia polymorpha HOM05D003321 ORTHO05D005161 1.7e-29 134.0 193 43.0
Os01g0184900 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 1.7e-29 134.0 192 44.3
SalBow1G0468 Salvia bowleyana HOM05D003321 ORTHO05D005161 1.7e-29 134.0 197 42.6
Hund09520 Selenicereus undatus HOM05D003321 ORTHO05D005161 1.7e-29 134.0 319 32.9
Nitab4.5_0009739g0020 Nicotiana tabacum HOM05D003321 ORTHO05D005161 3.8e-29 132.9 189 43.9
MBI17_g17503_MAGBIO Magnolia biondii HOM05D003321 ORTHO05D005161 4.9e-29 132.5 192 45.3
SGA_v2.0_scaffold205G41764 Striga asiatica HOM05D003321 ORTHO05D005161 4.9e-29 132.5 194 43.3
Migut.H00892 Erythranthe guttata HOM05D003321 ORTHO05D005161 2.5e-28 130.2 193 42.5
Os05g0182600 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 2.5e-28 130.2 192 42.7
CARHR151710 Cardamine hirsuta HOM05D003321 ORTHO05D005161 3.2e-28 129.8 190 44.7
FAN05G4145 Fragaria x ananassa HOM05D003321 ORTHO05D005161 3.2e-28 129.8 319 31.7
FAN09G2305 Fragaria x ananassa HOM05D003321 ORTHO05D005161 3.2e-28 129.8 319 32.0
Rhsim05G0106500 Rhododendron simsii HOM05D003321 ORTHO05D005161 5.5e-28 129.0 101 68.3
Migut.K01331 Erythranthe guttata HOM05D003321 ORTHO05D005161 9.3e-28 128.3 192 41.7
Zm00001eb337810 Zea mays HOM05D003321 ORTHO05D005161 9.3e-28 128.3 193 43.5
Ah.11g050340 Amaranthus hybridus HOM05D003321 ORTHO05D005161 1.2e-27 127.9 191 44.5
FAN09G2289 Fragaria x ananassa HOM05D003321 ORTHO05D005161 1.2e-27 127.9 319 31.3
Pp3c9_4400 Physcomitrium patens HOM05D003321 ORTHO05D005161 2.1e-27 127.1 193 40.4
AL5G18450 Arabidopsis lyrata HOM05D003321 ORTHO05D005161 3.5e-27 126.3 190 42.6
FAN02G3930 Fragaria x ananassa HOM05D003321 ORTHO05D005161 3.5e-27 126.3 188 41.5
MSTRG.3218 Avicennia marina HOM05D003321 ORTHO05D005161 4.6e-27 125.9 192 42.7
FAN14G5472 Fragaria x ananassa HOM05D003321 ORTHO05D005161 4.6e-27 125.9 188 41.5
EL10Ac5g10521 Beta vulgaris HOM05D003321 ORTHO05D005161 1.0e-26 124.8 190 42.1
Zm00001eb282920 Zea mays HOM05D003321 ORTHO05D005161 1.8e-26 124.0 192 42.7
HanXRQChr06g0173771 Helianthus annuus HOM05D003321 ORTHO05D019677 6.7e-26 122.1 98 64.3
HanXRQChr04g0102631 Helianthus annuus HOM05D003321 ORTHO05D019677 1.1e-25 121.3 110 58.2
HanXRQChr01g0022931 Helianthus annuus HOM05D003321 ORTHO05D019677 2.5e-25 120.2 94 66.0
CDE05G3094 Ceratophyllum demersum HOM05D003321 ORTHO05D005161 3.3e-25 119.8 167 47.3
vmacro05729 Vaccinium macrocarpon HOM05D003321 ORTHO05D005161 7.4e-25 118.6 155 47.7
AagrBONN_evm.TU.Sc2ySwM_362.1417 Anthoceros agrestis HOM05D003321 ORTHO05D005161 1.8e-23 114.0 193 36.8
Aqoxy3G00239 Aquilegia oxysepala HOM05D003321 ORTHO05D019677 9.0e-23 111.7 154 46.8
Lj1g0009615 Lotus japonicus HOM05D003321 ORTHO05D005161 1.5e-22 110.9 189 39.2
AagrBONN_evm.TU.Sc2ySwM_362.1279 Anthoceros agrestis HOM05D003321 ORTHO05D005161 2.0e-22 110.5 193 36.8
Oeu033336.1 Olea europaea HOM05D003321 ORTHO05D005161 3.4e-22 109.8 233 34.8
PSO384G3545 Papaver somniferum HOM05D003321 ORTHO05D005161 5.0e-21 105.9 100 58.0
HanXRQChr11g0334501 Helianthus annuus HOM05D003321 ORTHO05D019677 4.2e-20 102.8 82 63.4
HanXRQChr15g0486151 Helianthus annuus HOM05D003321 ORTHO05D019677 5.5e-20 102.4 82 63.4
Nitab4.5_0000564g0350 Nicotiana tabacum HOM05D003321 ORTHO05D005161 5.5e-20 102.4 163 41.7
Hma1.2p1_0105F.1_g050590 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 4.6e-19 99.4 89 61.8
SGA_v2.0_scaffold205G41773 Striga asiatica HOM05D003321 ORTHO05D005161 6.1e-19 99.0 104 50.0
Aqoxy3G03302 Aquilegia oxysepala HOM05D003321 ORTHO05D019677 2.3e-18 97.1 89 55.1
Cc07_g03050 Coffea canephora HOM05D003321 ORTHO05D005161 1.5e-17 94.4 146 42.5
SMO356G0125 Selaginella moellendorffii HOM05D003321 ORTHO05D005161 2.5e-17 93.6 194 34.5
PGSC0003DMG400001413 Solanum tuberosum HOM05D003321 ORTHO05D394828 1.3e-16 91.3 137 43.1
Thhalv10008631m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 9.1e-15 85.1 98 42.9
Sopen02g032430 Solanum pennellii HOM05D003321 ORTHO05D051122 1.3e-13 81.3 202 32.7
Lsat_1_v5_gn_5_101681 Lactuca sativa HOM05D003321 ORTHO05D000541 6.1e-11 72.4 53 67.9
PRCOL_00006095 Prasinoderma coloniale HOM05D003321 ORTHO05D005161 4.4e-09 66.2 97 36.1
HanXRQChr17g0550931 Helianthus annuus HOM05D003321 ORTHO05D224906 2.2e-08 63.9 37 81.1
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 1.5e-06 57.8 34 76.5
Cfa007905 Carpinus fangiana HOM05D003321 ORTHO05D005161 3.4e-06 56.6 34 73.5
Cc07_g03060 Coffea canephora HOM05D003321 ORTHO05D005161 5.9e-06 55.8 37 70.3


User provided reference genes

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