Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0158 Trochodendron aralioides HOM05D000877 ORTHO05D006099 6.4e-151 537.3 265 100.0
TAR371G0342 Trochodendron aralioides HOM05D000877 ORTHO05D006099 1.9e-150 535.8 265 99.6
TAR629G3200 Trochodendron aralioides HOM05D000877 ORTHO05D006099 3.2e-134 481.9 265 89.8
Dinv33678 Davidia involucrata HOM05D000877 ORTHO05D006099 3.4e-128 461.8 265 82.6
Hma1.2p1_0697F.1_g205150 Hydrangea macrophylla HOM05D000877 ORTHO05D006099 8.5e-127 457.2 265 82.6
Hma1.2p1_0849F.1_g228094 Hydrangea macrophylla HOM05D000877 ORTHO05D006099 8.5e-127 457.2 265 82.6
Potri.001G350400 Populus trichocarpa HOM05D000877 ORTHO05D006099 7.2e-126 454.1 265 81.1
Cfa007480 Carpinus fangiana HOM05D000877 ORTHO05D006099 6.1e-125 451.1 265 80.8
MD09G1040900 Malus domestica HOM05D000877 ORTHO05D006099 7.9e-125 450.7 262 81.3
Sabra16G0229900 Salix brachista HOM05D000877 ORTHO05D006099 7.9e-125 450.7 265 80.0
Haze_14617 Corylus avellana HOM05D000877 ORTHO05D006099 1.8e-124 449.5 265 80.4
MD17G1042200 Malus domestica HOM05D000877 ORTHO05D006099 3.0e-124 448.7 265 80.0
Prupe.3G276800 Prunus persica HOM05D000877 ORTHO05D006099 3.0e-124 448.7 265 80.4
Nn4g22930 Nelumbo nucifera HOM05D000877 ORTHO05D006099 5.1e-124 448.0 264 81.4
Potri.017G073900 Populus trichocarpa HOM05D000877 ORTHO05D006099 4.8e-122 441.4 265 79.2
Manes.15G179800 Manihot esculenta HOM05D000877 ORTHO05D006099 8.2e-122 440.7 265 79.2
Lj7A407G44 Lonicera japonica HOM05D000877 ORTHO05D006099 1.1e-121 440.3 265 80.4
TWI56G0224 Tripterygium wilfordii HOM05D000877 ORTHO05D006099 1.1e-121 440.3 265 80.4
Actinidia06049 Actinidia chinensis HOM05D000877 ORTHO05D006099 1.8e-121 439.5 265 79.2
COL.COLO4_29856 Corchorus olitorius HOM05D000877 ORTHO05D006099 3.1e-121 438.7 265 80.0
RhsimUnG0168300 Rhododendron simsii HOM05D000877 ORTHO05D006099 3.1e-121 438.7 265 79.6
CSS0034720 Camellia sinensis var. sinensis HOM05D000877 ORTHO05D006099 1.5e-120 436.4 265 80.4
vmacro05784 Vaccinium macrocarpon HOM05D000877 ORTHO05D006099 3.5e-120 435.3 265 78.5
Oeu050233.1 Olea europaea HOM05D000877 ORTHO05D006099 7.7e-120 434.1 265 79.2
CiPaw.03G033300 Carya illinoinensis HOM05D000877 ORTHO05D006099 1.0e-119 433.7 262 79.4
Atru.chr6.2158 Acer truncatum HOM05D000877 ORTHO05D006099 1.7e-119 433.0 265 79.6
RcHm_v2.0_Chr2g0170081 Rosa chinensis HOM05D000877 ORTHO05D006099 5.0e-119 431.4 265 78.1
Ciclev10014083m.g Citrus clementina HOM05D000877 ORTHO05D006099 8.5e-119 430.6 265 78.1
FAN05G2327 Fragaria x ananassa HOM05D000877 ORTHO05D006099 8.5e-119 430.6 265 77.7
QL02p078595 Quercus lobata HOM05D000877 ORTHO05D006099 8.5e-119 430.6 264 78.0
Cc07_g02730 Coffea canephora HOM05D000877 ORTHO05D006099 1.4e-118 429.9 265 78.5
Nitab4.5_0007185g0040 Nicotiana tabacum HOM05D000877 ORTHO05D006099 9.4e-118 427.2 265 78.9
Duzib264G0998 Durio zibethinus HOM05D000877 ORTHO05D006099 1.6e-117 426.4 265 78.5
FAN14G5633 Fragaria x ananassa HOM05D000877 ORTHO05D006099 2.1e-117 426.0 265 76.6
Aqoxy3G03133 Aquilegia oxysepala HOM05D000877 ORTHO05D006099 3.6e-117 425.2 263 78.3
FvH4_6g49910 Fragaria vesca HOM05D000877 ORTHO05D006099 3.6e-117 425.2 265 77.0
FAN09G1274 Fragaria x ananassa HOM05D000877 ORTHO05D006099 3.6e-117 425.2 265 77.0
Peaxi162Scf00129g00742 Petunia axillaris HOM05D000877 ORTHO05D006099 4.7e-117 424.9 265 77.7
PSO161G0067 Papaver somniferum HOM05D000877 ORTHO05D006099 2.3e-116 422.5 265 77.0
Thecc.04G066700 Theobroma cacao HOM05D000877 ORTHO05D006099 3.9e-116 421.8 265 78.1
DCAR_011189 Daucus carota HOM05D000877 ORTHO05D006099 6.7e-116 421.0 265 76.6
FAN02G4060 Fragaria x ananassa HOM05D000877 ORTHO05D006099 6.7e-116 421.0 265 76.6
Duzib147G0134 Durio zibethinus HOM05D000877 ORTHO05D006099 8.8e-116 420.6 265 77.4
PSO478G2265 Papaver somniferum HOM05D000877 ORTHO05D006099 1.5e-115 419.9 265 76.2
MSTRG.23976 Avicennia marina HOM05D000877 ORTHO05D006099 2.0e-115 419.5 264 75.8
Lj2g0013078 Lotus japonicus HOM05D000877 ORTHO05D006099 2.0e-115 419.5 262 76.7
PGSC0003DMG400001394 Solanum tuberosum HOM05D000877 ORTHO05D006099 2.0e-115 419.5 263 76.8
Sopen02g032050 Solanum pennellii HOM05D000877 ORTHO05D006099 1.7e-114 416.4 263 76.0
Medtr4g071680 Medicago truncatula HOM05D000877 ORTHO05D006099 3.7e-114 415.2 263 75.3
Medtr6g008850 Medicago truncatula HOM05D000877 ORTHO05D006099 3.7e-114 415.2 263 75.3
Solyc02g087290.3 Solanum lycopersicum HOM05D000877 ORTHO05D006099 4.8e-114 414.8 263 75.7
Gohir.A07G217200 Gossypium hirsutum HOM05D000877 ORTHO05D006099 6.3e-114 414.5 267 76.0
Eucgr.J02166 Eucalyptus grandis HOM05D000877 ORTHO05D006099 8.2e-114 414.1 265 76.2
Lalb_Chr06g0176531 Lupinus albus HOM05D000877 ORTHO05D006099 8.2e-114 414.1 265 74.3
Glyma.19G015900 Glycine max HOM05D000877 ORTHO05D006099 1.4e-113 413.3 262 74.4
VMungo0464G1235 Vigna mungo HOM05D000877 ORTHO05D006099 1.4e-113 413.3 261 74.7
Migut.H00173 Erythranthe guttata HOM05D000877 ORTHO05D006099 1.8e-113 412.9 266 74.4
Phvul.004G022500 Phaseolus vulgaris HOM05D000877 ORTHO05D006099 2.4e-113 412.5 262 74.0
Glyma.13G068100 Glycine max HOM05D000877 ORTHO05D006099 4.1e-113 411.8 262 73.7
TPR.G32573 Trifolium pratense HOM05D000877 ORTHO05D006099 7.0e-113 411.0 266 74.1
Ca_04234_v3 Cicer arietinum L. HOM05D000877 ORTHO05D006099 9.1e-113 410.6 268 75.0
Cpa.g.sc3592.1 Carica papaya HOM05D000877 ORTHO05D006099 1.2e-112 410.2 265 73.6
Gohir.D07G224200 Gossypium hirsutum HOM05D000877 ORTHO05D006099 2.6e-112 409.1 267 75.3
Gorai.001G258600 Gossypium raimondii HOM05D000877 ORTHO05D006099 2.6e-112 409.1 267 75.7
Psat1g078760 Pisum sativum HOM05D000877 ORTHO05D006099 2.6e-112 409.1 267 74.2
AUR62014574 Chenopodium quinoa HOM05D000877 ORTHO05D006099 5.9e-112 407.9 268 74.3
MBI15_g13304_MAGBIO Magnolia biondii HOM05D000877 ORTHO05D006099 5.9e-112 407.9 267 75.7
CAN.G206.66 Capsicum annuum HOM05D000877 ORTHO05D006099 1.0e-111 407.1 261 75.1
AUR62039387 Chenopodium quinoa HOM05D000877 ORTHO05D006099 1.7e-111 406.4 268 73.9
Gorai.006G027500 Gossypium raimondii HOM05D000877 ORTHO05D006099 2.5e-110 402.5 265 73.2
ClCG10G014620 Citrullus lanatus HOM05D000877 ORTHO05D006099 3.2e-110 402.1 262 72.5
Lalb_Chr02g0159851 Lupinus albus HOM05D000877 ORTHO05D006099 4.2e-110 401.7 262 74.0
EL10Ac2g04636 Beta vulgaris HOM05D000877 ORTHO05D006099 1.6e-109 399.8 268 72.4
Gohir.A09G024200 Gossypium hirsutum HOM05D000877 ORTHO05D006099 4.7e-109 398.3 265 73.2
Ah.16g102250 Amaranthus hybridus HOM05D000877 ORTHO05D006099 8.0e-109 397.5 267 73.0
arahy.Tifrunner.gnm1.ann1.L4IVZW Arachis hypogaea HOM05D000877 ORTHO05D006099 1.8e-108 396.4 262 70.6
arahy.Tifrunner.gnm1.ann1.69HWTH Arachis hypogaea HOM05D000877 ORTHO05D006099 2.3e-108 396.0 262 70.6
MELO3C009914.2 Cucumis melo HOM05D000877 ORTHO05D006099 2.3e-108 396.0 262 71.0
Gohir.D09G023400 Gossypium hirsutum HOM05D000877 ORTHO05D006099 2.3e-108 396.0 265 72.1
Hund13754 Selenicereus undatus HOM05D000877 ORTHO05D006099 4.0e-108 395.2 268 72.8
CsaV3_3G041960 Cucumis sativus L. HOM05D000877 ORTHO05D006099 8.8e-108 394.0 262 71.0
MSTRG.3199 Avicennia marina HOM05D000877 ORTHO05D006099 1.2e-107 393.7 310 63.5
Sed0005677 Sechium edule HOM05D000877 ORTHO05D006099 1.3e-106 390.2 263 73.0
Sc11g0007990 Simmondsia chinensis HOM05D000877 ORTHO05D006099 1.3e-106 390.2 266 70.7
HanXRQChr14g0448861 Helianthus annuus HOM05D000877 ORTHO05D006099 1.7e-106 389.8 262 72.5
CDE07G0682 Ceratophyllum demersum HOM05D000877 ORTHO05D006099 3.1e-105 385.6 265 71.7
CDE04G3424 Ceratophyllum demersum HOM05D000877 ORTHO05D006099 7.0e-105 384.4 265 71.7
Os06g0245700 Oryza sativa ssp. japonica HOM05D000877 ORTHO05D006099 2.0e-104 382.9 262 69.5
ECA238G2186 Erigeron canadensis HOM05D000877 ORTHO05D006099 7.7e-104 380.9 262 71.0
Zm00001eb371770 Zea mays HOM05D000877 ORTHO05D006099 7.7e-104 380.9 261 68.6
PGR083G2584 Punica granatum HOM05D000877 ORTHO05D006099 1.0e-103 380.6 265 69.8
Zm00001eb280070 Zea mays HOM05D000877 ORTHO05D006099 6.5e-103 377.9 262 67.6
Hund16097 Selenicereus undatus HOM05D000877 ORTHO05D006099 8.5e-103 377.5 270 68.5
THA.LOC104821170 Tarenaya hassleriana HOM05D000877 ORTHO05D006099 2.1e-101 372.9 265 71.3
AL6G25740 Arabidopsis lyrata HOM05D000877 ORTHO05D006099 6.1e-101 371.3 272 71.0
Thhalv10012487m.g Eutrema salsugineum HOM05D000877 ORTHO05D006099 1.0e-100 370.5 272 70.2
ATR0712G127 Amborella trichopoda HOM05D000877 ORTHO05D006099 3.0e-100 369.0 269 68.8
AT5G14950 Arabidopsis thaliana HOM05D000877 ORTHO05D006099 6.8e-100 367.9 272 69.9
Sp6g29100 Schrenkiella parvula HOM05D000877 ORTHO05D006099 6.8e-100 367.9 272 69.9
HPP92_010829 Vanilla planifolia HOM05D000877 ORTHO05D006099 8.8e-100 367.5 261 67.4
C02p07410 Brassica napus HOM05D000877 ORTHO05D006099 1.5e-99 366.7 268 69.8
BolC2t06672H Brassica oleracea HOM05D000877 ORTHO05D006099 1.5e-99 366.7 268 69.8
BraA02t05252Z Brassica rapa HOM05D000877 ORTHO05D006099 1.5e-99 366.7 269 70.3
Carub.0006s1311 Capsella rubella HOM05D000877 ORTHO05D006099 2.6e-99 365.9 273 70.3
SGA_v2.0_scaffold135G34823 Striga asiatica HOM05D000877 ORTHO05D006099 2.6e-99 365.9 258 69.4
Lsat_1_v5_gn_2_90780 Lactuca sativa HOM05D000877 ORTHO05D006099 2.8e-98 362.5 268 68.3
A03p06880 Brassica napus HOM05D000877 ORTHO05D006099 1.8e-97 359.8 271 70.1
CARHR198360 Cardamine hirsuta HOM05D000877 ORTHO05D006099 5.4e-97 358.2 272 68.0
unitig_699.g19885 Utricularia gibba HOM05D000877 ORTHO05D006099 9.1e-97 357.5 245 68.6
C03p07880 Brassica napus HOM05D000877 ORTHO05D006099 1.6e-96 356.7 271 69.4
BolC3t13286H Brassica oleracea HOM05D000877 ORTHO05D006099 3.5e-96 355.5 271 69.0
Dinv35009 Davidia involucrata HOM05D000877 ORTHO05D006099 2.5e-94 349.4 201 81.1
Aa31LG11G14550 Aethionema arabicum HOM05D000877 ORTHO05D006099 1.6e-93 346.7 267 65.9
BraA03t10011Z Brassica rapa HOM05D000877 ORTHO05D006099 8.0e-93 344.4 271 67.9
SEGI_10281 Sequoiadendron giganteum HOM05D000877 ORTHO05D006099 2.9e-87 325.9 268 59.7
SEGI_27946 Sequoiadendron giganteum HOM05D000877 ORTHO05D006099 2.9e-87 325.9 268 59.7
GSVIVG01032586001 Vitis vinifera HOM05D000877 ORTHO05D006099 2.8e-85 319.3 262 64.1
QL11p048256 Quercus lobata HOM05D000877 ORTHO05D006099 1.0e-84 317.4 214 73.8
A02p02790 Brassica napus HOM05D000877 ORTHO05D006099 3.4e-83 312.4 231 70.1
BcaB01g05088 Brassica carinata HOM05D000877 ORTHO05D006099 2.9e-74 282.7 258 60.1
SMO196G0126 Selaginella moellendorffii HOM05D000877 ORTHO05D006099 4.7e-69 265.4 262 56.5
AagrBONN_evm.TU.Sc2ySwM_228.1569 Anthoceros agrestis HOM05D000877 ORTHO05D006099 2.0e-59 233.4 276 45.3
Mapoly0060s0008 Marchantia polymorpha HOM05D000877 ORTHO05D006099 2.0e-59 233.4 278 46.4
Pp3c23_10010 Physcomitrium patens HOM05D000877 ORTHO05D006099 1.6e-56 223.8 276 47.5
CSS0011412 Camellia sinensis var. sinensis HOM05D000877 ORTHO05D006099 2.8e-45 186.4 104 84.6
Nn1g00845 Nelumbo nucifera HOM05D000877 ORTHO05D006099 3.4e-43 179.5 240 45.8
CBR_g55161 Chara braunii HOM05D000877 ORTHO05D006099 2.8e-29 133.3 185 39.5
BcaC03g13442 Brassica carinata HOM05D000877 ORTHO05D006099 6.1e-24 115.5 59 91.5
CBR_g22451 Chara braunii HOM05D000877 ORTHO05D006099 1.3e-23 114.4 170 38.8
Lalb_Chr24g0403161 Lupinus albus HOM05D000877 ORTHO05D001509 3.0e-07 60.1 139 30.9
Cc07_g10950 Coffea canephora HOM05D000877 ORTHO05D001509 5.1e-07 59.3 75 45.3
Peaxi162Scf00207g00148 Petunia axillaris HOM05D000877 ORTHO05D001509 1.5e-06 57.8 61 49.2
CBR_g23357 Chara braunii HOM05D000877 ORTHO05D001509 2.6e-06 57.0 59 47.5
Ciclev10024800m.g Citrus clementina HOM05D000877 ORTHO05D001509 2.6e-06 57.0 61 45.9
Medtr8g075330 Medicago truncatula HOM05D000877 ORTHO05D001509 2.6e-06 57.0 59 49.2
AUR62003352 Chenopodium quinoa HOM05D000877 ORTHO05D001509 3.3e-06 56.6 59 47.5
AUR62029484 Chenopodium quinoa HOM05D000877 ORTHO05D001509 3.3e-06 56.6 59 47.5
Nitab4.5_0001841g0100 Nicotiana tabacum HOM05D000877 ORTHO05D001509 3.3e-06 56.6 61 47.5
Solyc06g068860.3 Solanum lycopersicum HOM05D000877 ORTHO05D001509 4.4e-06 56.2 61 45.9
Sopen06g026150 Solanum pennellii HOM05D000877 ORTHO05D001509 4.4e-06 56.2 61 45.9
CAN.G423.45 Capsicum annuum HOM05D000877 ORTHO05D001509 5.7e-06 55.8 61 47.5
CBR_g23169 Chara braunii HOM05D000877 ORTHO05D001509 5.7e-06 55.8 59 49.2
Duzib205G0018 Durio zibethinus HOM05D000877 ORTHO05D001509 5.7e-06 55.8 61 45.9
Phvul.001G084501 Phaseolus vulgaris HOM05D000877 ORTHO05D001509 5.7e-06 55.8 59 49.2
Psat4g101360 Pisum sativum HOM05D000877 ORTHO05D001509 5.7e-06 55.8 64 42.2
Sc07g0003770 Simmondsia chinensis HOM05D000877 ORTHO05D001509 5.7e-06 55.8 57 49.1
Nitab4.5_0009949g0010 Nicotiana tabacum HOM05D000877 ORTHO05D001509 7.4e-06 55.5 61 45.9
VMungo1383G0452 Vigna mungo HOM05D000877 ORTHO05D001509 7.4e-06 55.5 59 47.5
MD02G1128700 Malus domestica HOM05D000877 ORTHO05D001509 9.7e-06 55.1 61 41.0
Mapoly0060s0055 Marchantia polymorpha HOM05D000877 ORTHO05D001509 9.7e-06 55.1 61 45.9
PGR102G1738 Punica granatum HOM05D000877 ORTHO05D001509 9.7e-06 55.1 61 44.3
Solyc02g083700.4 Solanum lycopersicum HOM05D000877 ORTHO05D001509 9.7e-06 55.1 61 45.9
Sopen02g028470 Solanum pennellii HOM05D000877 ORTHO05D001509 9.7e-06 55.1 61 45.9
VMungo0251G1714 Vigna mungo HOM05D000877 ORTHO05D001509 9.7e-06 55.1 61 44.3


User provided reference genes

Program Settings