Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0897 Trochodendron aralioides HOM05D003897 ORTHO05D414159 2.7e-61 238.4 117 100.0
Aqoxy6G02891 Aquilegia oxysepala HOM05D003897 ORTHO05D005095 1.4e-12 76.6 82 57.3
PSO675G0875 Papaver somniferum HOM05D003897 ORTHO05D005095 1.4e-12 76.6 82 56.1
Nn3g20693 Nelumbo nucifera HOM05D003897 ORTHO05D005095 3.1e-12 75.5 82 57.3
Potri.009G097600 Populus trichocarpa HOM05D003897 ORTHO05D005095 3.1e-12 75.5 82 56.1
PSO541G0439 Papaver somniferum HOM05D003897 ORTHO05D005095 4.0e-12 75.1 82 54.9
TWI79G1683 Tripterygium wilfordii HOM05D003897 ORTHO05D005095 5.2e-12 74.7 82 54.9
CANSAT25G1851 Cannabis sativa HOM05D003897 ORTHO05D005095 6.8e-12 74.3 82 53.7
ATR0782G093 Amborella trichopoda HOM05D003897 ORTHO05D005095 8.9e-12 73.9 93 53.8
Sabra09G0074900 Salix brachista HOM05D003897 ORTHO05D005095 8.9e-12 73.9 82 54.9
HanXRQChr03g0070231 Helianthus annuus HOM05D003897 ORTHO05D005095 1.2e-11 73.6 82 53.7
TWI31G0147 Tripterygium wilfordii HOM05D003897 ORTHO05D005095 1.5e-11 73.2 82 53.7
TAR628G0435 Trochodendron aralioides HOM05D003897 ORTHO05D005095 1.5e-11 73.2 82 54.9
AL3G47150 Arabidopsis lyrata HOM05D003897 ORTHO05D005095 2.0e-11 72.8 82 52.4
AT2G15430 Arabidopsis thaliana HOM05D003897 ORTHO05D005095 2.0e-11 72.8 82 52.4
Carub.0003s2927 Capsella rubella HOM05D003897 ORTHO05D005095 2.0e-11 72.8 82 52.4
COL.COLO4_32614 Corchorus olitorius HOM05D003897 ORTHO05D005095 2.0e-11 72.8 82 53.7
HanXRQChr16g0530591 Helianthus annuus HOM05D003897 ORTHO05D005095 2.0e-11 72.8 82 53.7
PGR042G2465 Punica granatum HOM05D003897 ORTHO05D005095 2.6e-11 72.4 82 53.7
THA.LOC104804386 Tarenaya hassleriana HOM05D003897 ORTHO05D005095 2.6e-11 72.4 93 51.6
CDE04G0824 Ceratophyllum demersum HOM05D003897 ORTHO05D005095 3.4e-11 72.0 82 53.7
Cc02_g19130 Coffea canephora HOM05D003897 ORTHO05D005095 3.4e-11 72.0 82 52.4
Hma1.2p1_0796F.1_g219060 Hydrangea macrophylla HOM05D003897 ORTHO05D005095 3.4e-11 72.0 82 53.7
Actinidia27966 Actinidia chinensis HOM05D003897 ORTHO05D005095 4.4e-11 71.6 82 52.4
Aa31LG8G13200 Aethionema arabicum HOM05D003897 ORTHO05D005095 4.4e-11 71.6 93 50.5
BcaB03g16292 Brassica carinata HOM05D003897 ORTHO05D005095 4.4e-11 71.6 82 51.2
BcaC04g23047 Brassica carinata HOM05D003897 ORTHO05D005095 4.4e-11 71.6 82 51.2
BcaC06g36057 Brassica carinata HOM05D003897 ORTHO05D005095 4.4e-11 71.6 82 51.2
A07p05280 Brassica napus HOM05D003897 ORTHO05D005095 4.4e-11 71.6 82 51.2
A09p10760 Brassica napus HOM05D003897 ORTHO05D005095 4.4e-11 71.6 82 51.2
C07p08400 Brassica napus HOM05D003897 ORTHO05D005095 4.4e-11 71.6 82 51.2
C09p12730 Brassica napus HOM05D003897 ORTHO05D005095 4.4e-11 71.6 82 51.2
BolC7t41254H Brassica oleracea HOM05D003897 ORTHO05D005095 4.4e-11 71.6 82 51.2
BraA07t28320Z Brassica rapa HOM05D003897 ORTHO05D005095 4.4e-11 71.6 82 51.2
BraA09t36718Z Brassica rapa HOM05D003897 ORTHO05D005095 4.4e-11 71.6 82 51.2
CSS0022988 Camellia sinensis var. sinensis HOM05D003897 ORTHO05D005095 4.4e-11 71.6 82 52.4
Ciclev10028849m.g Citrus clementina HOM05D003897 ORTHO05D005095 4.4e-11 71.6 82 52.4
Duzib248G1300 Durio zibethinus HOM05D003897 ORTHO05D005095 4.4e-11 71.6 82 52.4
Thhalv10011661m.g Eutrema salsugineum HOM05D003897 ORTHO05D005095 4.4e-11 71.6 82 51.2
Sp3g28700 Schrenkiella parvula HOM05D003897 ORTHO05D005095 4.4e-11 71.6 82 51.2
Thecc.02G106100 Theobroma cacao HOM05D003897 ORTHO05D005095 4.4e-11 71.6 82 52.4
Ah.01g018040 Amaranthus hybridus HOM05D003897 ORTHO05D005095 5.8e-11 71.2 81 53.1
FvH4_2g05450 Fragaria vesca HOM05D003897 ORTHO05D005095 5.8e-11 71.2 82 50.0
FAN15G0415 Fragaria x ananassa HOM05D003897 ORTHO05D005095 5.8e-11 71.2 82 50.0
FAN20G3196 Fragaria x ananassa HOM05D003897 ORTHO05D005095 5.8e-11 71.2 82 50.0
FAN27G3036 Fragaria x ananassa HOM05D003897 ORTHO05D005095 5.8e-11 71.2 82 50.0
Lsat_1_v5_gn_9_111421 Lactuca sativa HOM05D003897 ORTHO05D005095 5.8e-11 71.2 82 52.4
MD10G1096200 Malus domestica HOM05D003897 ORTHO05D005095 5.8e-11 71.2 82 50.0
Nn4g26537 Nelumbo nucifera HOM05D003897 ORTHO05D005095 5.8e-11 71.2 93 50.5
RcHm_v2.0_Chr6g0255731 Rosa chinensis HOM05D003897 ORTHO05D005095 5.8e-11 71.2 82 50.0
Sc18g0005670 Simmondsia chinensis HOM05D003897 ORTHO05D005095 5.8e-11 71.2 82 52.4
CDE06G1902 Ceratophyllum demersum HOM05D003897 ORTHO05D005095 7.5e-11 70.9 82 52.4
Dinv15751 Davidia involucrata HOM05D003897 ORTHO05D005095 7.5e-11 70.9 82 51.2
Dinv42183 Davidia involucrata HOM05D003897 ORTHO05D005095 7.5e-11 70.9 82 51.2
Gohir.D04G161200 Gossypium hirsutum HOM05D003897 ORTHO05D005095 7.5e-11 70.9 82 52.4
Nitab4.5_0000027g0450 Nicotiana tabacum HOM05D003897 ORTHO05D005095 7.5e-11 70.9 82 51.2
Nitab4.5_0010998g0010 Nicotiana tabacum HOM05D003897 ORTHO05D005095 7.5e-11 70.9 82 51.2
EL10Ac9g22306 Beta vulgaris HOM05D003897 ORTHO05D005095 9.9e-11 70.5 82 50.0
CiPaw.06G170300 Carya illinoinensis HOM05D003897 ORTHO05D005095 9.9e-11 70.5 82 51.2
ClCG11G007460 Citrullus lanatus HOM05D003897 ORTHO05D005095 9.9e-11 70.5 82 51.2
MELO3C008589.2 Cucumis melo HOM05D003897 ORTHO05D005095 9.9e-11 70.5 82 51.2
CsaV3_2G010370 Cucumis sativus L. HOM05D003897 ORTHO05D005095 9.9e-11 70.5 82 51.2
Gohir.A12G022600 Gossypium hirsutum HOM05D003897 ORTHO05D005095 9.9e-11 70.5 82 51.2
Gohir.D12G023000 Gossypium hirsutum HOM05D003897 ORTHO05D005095 9.9e-11 70.5 82 51.2
Gorai.008G023500 Gossypium raimondii HOM05D003897 ORTHO05D005095 9.9e-11 70.5 82 51.2
Oeu010392.2 Olea europaea HOM05D003897 ORTHO05D005095 9.9e-11 70.5 82 51.2
PSO063G1051 Papaver somniferum HOM05D003897 ORTHO05D005095 9.9e-11 70.5 82 50.0
PSO782G0863 Papaver somniferum HOM05D003897 ORTHO05D005095 9.9e-11 70.5 82 50.0
Prupe.8G132000 Prunus persica HOM05D003897 ORTHO05D005095 9.9e-11 70.5 82 48.8
SalBow3G0479 Salvia bowleyana HOM05D003897 ORTHO05D005095 9.9e-11 70.5 82 51.2
Zm00001eb095630 Zea mays HOM05D003897 ORTHO05D005095 9.9e-11 70.5 93 50.5
BolC9t54161H Brassica oleracea HOM05D003897 ORTHO05D005095 1.3e-10 70.1 82 50.0
Eucgr.G01370 Eucalyptus grandis HOM05D003897 ORTHO05D005095 1.3e-10 70.1 81 53.1
MD05G1087400 Malus domestica HOM05D003897 ORTHO05D005095 1.3e-10 70.1 82 48.8
Manes.10G077334 Manihot esculenta HOM05D003897 ORTHO05D005095 1.3e-10 70.1 82 51.2
Phvul.002G097400 Phaseolus vulgaris HOM05D003897 ORTHO05D005095 1.3e-10 70.1 82 51.2
VMungo0251G0352 Vigna mungo HOM05D003897 ORTHO05D005095 1.3e-10 70.1 82 51.2
Atru.chr5.2594 Acer truncatum HOM05D003897 ORTHO05D005095 1.7e-10 69.7 82 50.0
Atru.chr9.455 Acer truncatum HOM05D003897 ORTHO05D005095 1.7e-10 69.7 82 50.0
AL3G47140 Arabidopsis lyrata HOM05D003897 ORTHO05D005095 1.7e-10 69.7 82 51.2
CAN.G184.18 Capsicum annuum HOM05D003897 ORTHO05D005095 1.7e-10 69.7 82 50.0
Cfa004562 Carpinus fangiana HOM05D003897 ORTHO05D005095 1.7e-10 69.7 82 51.2
ECA240G4340 Erigeron canadensis HOM05D003897 ORTHO05D005095 1.7e-10 69.7 82 51.2
Glyma.07G220900 Glycine max HOM05D003897 ORTHO05D005095 1.7e-10 69.7 82 50.0
Glyma.20G019200 Glycine max HOM05D003897 ORTHO05D005095 1.7e-10 69.7 82 50.0
Gohir.A04G119600 Gossypium hirsutum HOM05D003897 ORTHO05D005095 1.7e-10 69.7 82 51.2
Gorai.012G149200 Gossypium raimondii HOM05D003897 ORTHO05D005095 1.7e-10 69.7 82 51.2
Manes.07G075381 Manihot esculenta HOM05D003897 ORTHO05D005095 1.7e-10 69.7 82 50.0
QL11p034241 Quercus lobata HOM05D003897 ORTHO05D005095 1.7e-10 69.7 82 51.2
vmacro19519 Vaccinium macrocarpon HOM05D003897 ORTHO05D005095 1.7e-10 69.7 82 51.2
Thhalv10022739m.g Eutrema salsugineum HOM05D003897 ORTHO05D005095 2.2e-10 69.3 82 50.0
Os09g0110400 Oryza sativa ssp. japonica HOM05D003897 ORTHO05D005095 2.2e-10 69.3 81 51.9
TPR.G13205 Trifolium pratense HOM05D003897 ORTHO05D005095 2.2e-10 69.3 82 48.8
Lj5C213T4 Lonicera japonica HOM05D003897 ORTHO05D005095 2.9e-10 68.9 82 50.0
Solyc05g010300.4 Solanum lycopersicum HOM05D003897 ORTHO05D005095 2.9e-10 68.9 82 48.8
Sopen05g006070 Solanum pennellii HOM05D003897 ORTHO05D005095 2.9e-10 68.9 82 48.8
MSTRG.27740 Avicennia marina HOM05D003897 ORTHO05D005095 3.7e-10 68.6 82 48.8
Lalb_Chr09g0328701 Lupinus albus HOM05D003897 ORTHO05D005095 3.7e-10 68.6 82 50.0
Lalb_Chr16g0386191 Lupinus albus HOM05D003897 ORTHO05D005095 3.7e-10 68.6 82 50.0
Peaxi162Scf00188g00619 Petunia axillaris HOM05D003897 ORTHO05D005095 3.7e-10 68.6 82 50.0
Oeu028249.2 Olea europaea HOM05D003897 ORTHO05D005095 4.9e-10 68.2 82 50.0
Sed0005062 Sechium edule HOM05D003897 ORTHO05D005095 4.9e-10 68.2 82 50.0
Hund06327 Selenicereus undatus HOM05D003897 ORTHO05D005095 4.9e-10 68.2 49 71.4
SEGI_28988 Sequoiadendron giganteum HOM05D003897 ORTHO05D005095 4.9e-10 68.2 85 49.4
arahy.Tifrunner.gnm1.ann1.7FBU4T Arachis hypogaea HOM05D003897 ORTHO05D005095 6.4e-10 67.8 82 48.8
arahy.Tifrunner.gnm1.ann1.9R7E2G Arachis hypogaea HOM05D003897 ORTHO05D005095 6.4e-10 67.8 82 48.8
DCAR_021998 Daucus carota HOM05D003897 ORTHO05D005095 6.4e-10 67.8 82 47.6
FAN24G2661 Fragaria x ananassa HOM05D003897 ORTHO05D005095 6.4e-10 67.8 79 49.4
Rhsim05G0087400 Rhododendron simsii HOM05D003897 ORTHO05D005095 8.3e-10 67.4 82 48.8
RhsimUnG0060800 Rhododendron simsii HOM05D003897 ORTHO05D005095 8.3e-10 67.4 82 48.8
CAN.G1774.1 Capsicum annuum HOM05D003897 ORTHO05D005095 1.1e-09 67.0 83 49.4
DCAR_012421 Daucus carota HOM05D003897 ORTHO05D005095 1.1e-09 67.0 82 48.8
Lalb_Chr05g0219651 Lupinus albus HOM05D003897 ORTHO05D005095 1.1e-09 67.0 140 35.7
CAN.G362.22 Capsicum annuum HOM05D003897 ORTHO05D005095 1.4e-09 66.6 82 47.6
unitig_26.g10235 Utricularia gibba HOM05D003897 ORTHO05D005095 1.4e-09 66.6 82 48.8
SMO367G1036 Selaginella moellendorffii HOM05D003897 ORTHO05D005095 1.9e-09 66.2 93 46.2
AUR62010272 Chenopodium quinoa HOM05D003897 ORTHO05D005095 3.2e-09 65.5 82 46.3
AUR62013252 Chenopodium quinoa HOM05D003897 ORTHO05D005095 3.2e-09 65.5 82 46.3
AUR62026162 Chenopodium quinoa HOM05D003897 ORTHO05D005095 3.2e-09 65.5 82 46.3
Prupe.8G132400 Prunus persica HOM05D003897 ORTHO05D005095 3.2e-09 65.5 71 50.7
Ca_18755_v3 Cicer arietinum L. HOM05D003897 ORTHO05D005095 4.1e-09 65.1 49 67.3
Psat7g129720 Pisum sativum HOM05D003897 ORTHO05D005095 4.1e-09 65.1 49 67.3
Medtr4g084150 Medicago truncatula HOM05D003897 ORTHO05D005095 5.4e-09 64.7 49 65.3
AagrBONN_evm.TU.Sc2ySwM_117.2300 Anthoceros agrestis HOM05D003897 ORTHO05D005095 9.2e-09 63.9 49 63.3
Lalb_Chr16g0386231 Lupinus albus HOM05D003897 ORTHO05D005095 1.2e-08 63.5 49 67.3
SGA_v2.0_scaffold393G50705 Striga asiatica HOM05D003897 ORTHO05D005095 1.2e-08 63.5 49 67.3
vmacro02010 Vaccinium macrocarpon HOM05D003897 ORTHO05D005095 1.2e-08 63.5 82 47.6
CAN.G1372.13 Capsicum annuum HOM05D000052 ORTHO05D000046 1.6e-08 63.2 82 45.1
Mapoly0027s0025 Marchantia polymorpha HOM05D003897 ORTHO05D005095 1.6e-08 63.2 93 44.1
SGA_v2.0_scaffold13G06605 Striga asiatica HOM05D003897 ORTHO05D005095 1.6e-08 63.2 49 65.3
AT2G15400 Arabidopsis thaliana HOM05D003897 ORTHO05D005095 2.1e-08 62.8 49 67.3
MD01G1180900 Malus domestica HOM05D000069 ORTHO05D005129 2.7e-08 62.4 49 63.3
RcHm_v2.0_Chr5g0063881 Rosa chinensis HOM05D003897 ORTHO05D005095 2.7e-08 62.4 82 45.1
Pp3c14_9440 Physcomitrium patens HOM05D003897 ORTHO05D005095 3.5e-08 62.0 93 46.2
CAN.G107.20 Capsicum annuum HOM05D003897 ORTHO05D005095 7.8e-08 60.8 77 48.1
CAN.G982.2 Capsicum annuum HOM05D003897 ORTHO05D005095 1.0e-07 60.5 82 45.1
Lj4g0008450 Lotus japonicus HOM05D003897 ORTHO05D005095 1.7e-07 59.7 49 63.3
AagrBONN_evm.TU.Sc2ySwM_362.1866 Anthoceros agrestis HOM05D003897 ORTHO05D005095 8.6e-07 57.4 50 56.0
BcaB07g31789 Brassica carinata HOM05D003897 ORTHO05D005095 8.6e-07 57.4 82 45.1
AUR62024543 Chenopodium quinoa HOM05D007817 ORTHO05D010493 1.1e-06 57.0 44 65.9
Mapoly0084s0037 Marchantia polymorpha HOM05D003897 ORTHO05D005095 2.5e-06 55.8 49 61.2
Lj9C321G13 Lonicera japonica HOM05D003897 ORTHO05D005095 4.3e-06 55.1 82 45.1
CBR_g49328 Chara braunii HOM05D003897 ORTHO05D005095 5.6e-06 54.7 47 63.8


User provided reference genes

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